LOCUS       NM_001141626            1216 bp    mRNA    linear   VRT 27-JUN-2020
DEFINITION  Salmo salar homeobox protein HoxB9ab (hoxb9ab), mRNA.
ACCESSION   NM_001141626
VERSION     NM_001141626.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D.
  TITLE     Differential evolution of the 13 Atlantic salmon Hox clusters
  JOURNAL   Mol. Biol. Evol. 25 (7), 1333-1343 (2008)
   PUBMED   18424774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF695334.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF695334.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa06"
                     /map="ssa06"
     gene            1..1216
                     /gene="hoxb9ab"
                     /note="homeobox protein HoxB9ab"
                     /db_xref="GeneID:100196597"
     misc_feature    81..83
                     /gene="hoxb9ab"
                     /note="upstream in-frame stop codon"
     CDS             93..842
                     /gene="hoxb9ab"
                     /codon_start=1
                     /product="homeobox protein HoxB9ab"
                     /protein_id="NP_001135098.1"
                     /db_xref="GeneID:100196597"
                     /translation="

MSISGTLSNYYVDSIISHESEDPTSVRFSNVQYSNSRQPGGHGEHPEFPSCSFQPKPPVFSSSWSPFSPHASNGLPAVYHPYIPTQPVPSTDTRYIRTWLDCAPRSESLPGQGQVKMEPLLGHLGEPPKIGGHEYILESSSAREMNSSQGSGFEDNKDICEGTEDKEGPDQNDPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARSLNLTERQVKIWFQNRRMKMKKMNKDQPKD"

     misc_feature    93..605
                     /gene="hoxb9ab"
                     /note="Hox9 activation region; Region: Hox9_act;
                     pfam04617"
                     /db_xref="CDD:428038"
     misc_feature    order(645..659,663..665,714..716,732..734,771..773,
                     777..782,789..794,798..806,810..815)
                     /gene="hoxb9ab"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    651..812
                     /gene="hoxb9ab"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(651..653,660..662,780..782,789..794,801..803)
                     /gene="hoxb9ab"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

ctttgttcgtaggctagtagaaggctagtaaaaaagacttctgtcctacatgttttcaattcaatgaaccgtgaattgtataatgtccgagaatgtccatttctggaactctgagcaactattatgtggactctataataagtcacgagagcgaagatccgacttcagtcaggttttccaatgtacagtattcgaactccaggcaaccggggggacatggcgagcatcccgaattcccctcttgtagcttccagcctaaacctccagtttttagctcgtcctggagcccgttcagcccccatgcctccaatggcttaccagcggtttaccatccatacatcccgactcagcccgtgccttccacggacacccgatacatacgcacttggctcgactgcgctccgcgctcggagtccctccccgggcaggggcaggtcaagatggagccgctactgggacacctcggggaaccccccaaaatcggtggacacgagtacattttggaatcctcttcggcaagagagatgaattccagccagggctccggattcgaggacaataaggatatctgtgaaggtaccgaagacaaagaagggccagatcaaaatgacccctctgccaactggttgcatgcccggtcttcccggaagaagcggtgcccttacacgaaataccaaaccctcgagctcgagaaagagttcctcttcaacatgtacctcacccgggacagaaggcacgaggtagcgcgctccctgaacttgaccgagagacaagtcaaaatatggttccaaaaccgacggatgaaaatgaagaaaatgaataaggatcaacccaaggattaagaaaaaaggggagtgctattaaaaacaccaccattacaaagagtctgctttctcgttacttttcccttaaataggcatacatggactgtaatgggtaaagtgggggtgcaggaagcttgtttttattattttccatatcgatgtgaaataccctctgacattatagaagcgcagaccaatagagaaaccccttatggtacattgtagctcagttggtatagcatggcgcttgtgacgccagggtagttggtttgtttcccgggatcacccgtacgtaaaatgtatgcacgcatgactgtaagtcgctatggataaaagcgtctgctaaatgccatatattatactatacagtagaaaggagggtggattcacgc

//