2024-03-29 19:29:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001140828 1221 bp mRNA linear VRT 27-JUN-2020 DEFINITION Salmo salar distal-less homeobox gene 3b (dlx3b), mRNA. ACCESSION NM_001140828 VERSION NM_001140828.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1221) AUTHORS Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF. TITLE Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome JOURNAL BMC Genomics 11, 279 (2010) PUBMED 20433749 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT047168.1. ##Evidence-Data-START## Transcript exon combination :: BT047168.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1221 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa19" /map="ssa19" gene 1..1221 /gene="dlx3b" /note="distal-less homeobox gene 3b" /db_xref="GeneID:100195799" exon 1..502 /gene="dlx3b" /inference="alignment:Splign:2.0.8" CDS 160..777 /gene="dlx3b" /codon_start=1 /product="homeobox protein Dlx3b" /protein_id="NP_001134300.1" /db_xref="GeneID:100195799" /translation="
MMSGQIYEKKIASILTDLPGSMSCHPSSKDSPTLPESSVTDMGYYSGQTAHSHHEYYQSQTYGQQMNAYHHQFNLNGMGGAGVYPTKSEYPYTNAYRQYGHYNRDHLQASPQSSVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNSKALGLFINKD"
misc_feature 244..492 /gene="dlx3b" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(559..573,577..579,628..630,646..648,685..687, 691..696,703..708,712..720,724..729) /gene="dlx3b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 565..726 /gene="dlx3b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(565..567,574..576,694..696,703..708,715..717) /gene="dlx3b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 503..687 /gene="dlx3b" /inference="alignment:Splign:2.0.8" exon 688..739 /gene="dlx3b" /inference="alignment:Splign:2.0.8" exon 740..1221 /gene="dlx3b" /inference="alignment:Splign:2.0.8" ORIGIN
acaacggagttactacagctaggagagtttgaggacttgctctccaaggacttgcgtttagggcgcactactgactatatctcttcactgcgatttattttaacactactgcacaaacgttctgtatttacgaattatcgtggactttcttgtctacccatgatgagtggacagatttatgaaaagaagatagcgagcattttgaccgatctccccggatctatgagttgccatccgagctccaaggactctccgactcttccggagtcctcagtcacggacatgggttactacagtggacaaacggctcacagccatcacgaatattatcagagtcaaacatacgggcaacaaatgaatgcctaccatcaccaattcaatctgaatggaatgggtggtgcgggagtttatcccaccaagtctgaatacccttacacaaatgcctacagacaatatggacattacaacagagatcatctgcaggcttcacctcaaagctcagtgaaagaagaacccgagcctgaagttcgtatggtgaatggaaaaccaaagaaaatccgcaagccgagaacaatttactccagctaccaactagcagcgttgcagagacgttttcagaaagcgcagtacctcgccctcccggagagagccgaacttgcggctcaactcggtctgacacagacacaggtcaagatttggttccaaaaccggaggtccaaattcaagaagctttacaagaacagcaaagcgttggggctgtttattaacaaagactaaacatagagttttaatacgaggcccttccacatcaaatgaactttacagagctctaaaaagtagaagctggcgatggcttgtttttggacgtagacctgacagaagtgaaagtaggtatttccctgaaaagctgggtaaaccatttttactgtaggctagcttacctaacacgggaagaataatgacaaaactgttcagttgatccatattaaatcgtggatatgggtttgcagagcatgcgtcagaaactcaggtcataatttatatcgatttgtacaaaatgtcgaaggctgtacataggtgttaatagaaagcagaaccactaagttcatatttgtttagattggaaataccgcactgtggtgctgcgaacctttttatattaatgttgtaattagtatgttattattgcctttctgtcaaaacaaataaagatatcaattg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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