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2024-03-29 19:29:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001140828            1221 bp    mRNA    linear   VRT 27-JUN-2020
DEFINITION  Salmo salar distal-less homeobox gene 3b (dlx3b), mRNA.
ACCESSION   NM_001140828
VERSION     NM_001140828.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao
            NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF.
  TITLE     Salmo salar and Esox lucius full-length cDNA sequences reveal
            changes in evolutionary pressures on a post-tetraploidization
            genome
  JOURNAL   BMC Genomics 11, 279 (2010)
   PUBMED   20433749
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT047168.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT047168.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa19"
                     /map="ssa19"
     gene            1..1221
                     /gene="dlx3b"
                     /note="distal-less homeobox gene 3b"
                     /db_xref="GeneID:100195799"
     exon            1..502
                     /gene="dlx3b"
                     /inference="alignment:Splign:2.0.8"
     CDS             160..777
                     /gene="dlx3b"
                     /codon_start=1
                     /product="homeobox protein Dlx3b"
                     /protein_id="NP_001134300.1"
                     /db_xref="GeneID:100195799"
                     /translation="
MMSGQIYEKKIASILTDLPGSMSCHPSSKDSPTLPESSVTDMGYYSGQTAHSHHEYYQSQTYGQQMNAYHHQFNLNGMGGAGVYPTKSEYPYTNAYRQYGHYNRDHLQASPQSSVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNSKALGLFINKD"
     misc_feature    244..492
                     /gene="dlx3b"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    order(559..573,577..579,628..630,646..648,685..687,
                     691..696,703..708,712..720,724..729)
                     /gene="dlx3b"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    565..726
                     /gene="dlx3b"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(565..567,574..576,694..696,703..708,715..717)
                     /gene="dlx3b"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            503..687
                     /gene="dlx3b"
                     /inference="alignment:Splign:2.0.8"
     exon            688..739
                     /gene="dlx3b"
                     /inference="alignment:Splign:2.0.8"
     exon            740..1221
                     /gene="dlx3b"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
acaacggagttactacagctaggagagtttgaggacttgctctccaaggacttgcgtttagggcgcactactgactatatctcttcactgcgatttattttaacactactgcacaaacgttctgtatttacgaattatcgtggactttcttgtctacccatgatgagtggacagatttatgaaaagaagatagcgagcattttgaccgatctccccggatctatgagttgccatccgagctccaaggactctccgactcttccggagtcctcagtcacggacatgggttactacagtggacaaacggctcacagccatcacgaatattatcagagtcaaacatacgggcaacaaatgaatgcctaccatcaccaattcaatctgaatggaatgggtggtgcgggagtttatcccaccaagtctgaatacccttacacaaatgcctacagacaatatggacattacaacagagatcatctgcaggcttcacctcaaagctcagtgaaagaagaacccgagcctgaagttcgtatggtgaatggaaaaccaaagaaaatccgcaagccgagaacaatttactccagctaccaactagcagcgttgcagagacgttttcagaaagcgcagtacctcgccctcccggagagagccgaacttgcggctcaactcggtctgacacagacacaggtcaagatttggttccaaaaccggaggtccaaattcaagaagctttacaagaacagcaaagcgttggggctgtttattaacaaagactaaacatagagttttaatacgaggcccttccacatcaaatgaactttacagagctctaaaaagtagaagctggcgatggcttgtttttggacgtagacctgacagaagtgaaagtaggtatttccctgaaaagctgggtaaaccatttttactgtaggctagcttacctaacacgggaagaataatgacaaaactgttcagttgatccatattaaatcgtggatatgggtttgcagagcatgcgtcagaaactcaggtcataatttatatcgatttgtacaaaatgtcgaaggctgtacataggtgttaatagaaagcagaaccactaagttcatatttgtttagattggaaataccgcactgtggtgctgcgaacctttttatattaatgttgtaattagtatgttattattgcctttctgtcaaaacaaataaagatatcaattg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]