2024-03-29 16:32:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001139571 1087 bp mRNA linear VRT 10-JAN-2022 DEFINITION Salmo salar homeobox A10b (hoxa10b), mRNA. ACCESSION NM_001139571 VERSION NM_001139571.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1087) AUTHORS Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D. TITLE Differential evolution of the 13 Atlantic salmon Hox clusters JOURNAL Mol Biol Evol 25 (7), 1333-1343 (2008) PUBMED 18424774 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU025701.1. ##Evidence-Data-START## Transcript exon combination :: EF695321.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02597923, SAMN02597924 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1087 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa02" /map="ssa02" gene 1..1087 /gene="hoxa10b" /note="homeobox A10b" /db_xref="GeneID:100194481" CDS 1..1020 /gene="hoxa10b" /note="homeobox protein HoxA10b; homeo box A10b" /codon_start=1 /product="homeobox protein Hox-A10b" /protein_id="NP_001133043.1" /db_xref="GeneID:100194481" /translation="
MSCSDNHSGNSFLVDSLIHGRTESGASYYQSNGVYMPPGSEYSYGLPNRAFFSGFSKRNESNSQTMVPSSGPYSHIQGTETWLETSRSCRVDQPNNHQQIAHCSFSPSIKEENAYCLYESEKCLKGSTTREDISYSRLTPGSCPVTNSTVPVPGYFRLSQTYSSSKVYQDVQRNPQHNHFALQRPARFDPSPPSPTPGVDTGRRESEALPEPPPCAPDEDTRTSTVDGLSSPEPTESCAESPDKPVKGDGTSETKANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMSRENRSYRELANNFSFS"
misc_feature order(793..807,811..813,862..864,880..882,919..921, 925..930,937..942,946..954,958..963) /gene="hoxa10b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 799..960 /gene="hoxa10b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(799..801,808..810,928..930,937..942,949..951) /gene="hoxa10b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..742 /gene="hoxa10b" /inference="alignment:Splign:2.1.0" exon 743..1087 /gene="hoxa10b" /inference="alignment:Splign:2.1.0" ORIGIN
atgtcatgctctgacaaccacagtggaaactcgttcttagtggactccttaatccacggacgaaccgagagcggtgcctcatactaccaaagtaacggcgtgtatatgccaccaggctcggagtactcctatggactacccaaccgcgcttttttctcggggttcagtaaacgcaacgagagcaattctcaaactatggtaccctcatctggcccgtattcacatattcaagggacggaaacgtggctagagacgtcgagatcttgtcgagtagatcaaccgaacaaccaccagcaaattgctcattgttcattctctccgagcatcaaagaggagaatgcgtattgcctgtatgaatcagagaagtgtcttaaagggtcaacaacgagggaagacatttcctattcccggttaacaccgggatcatgcccggttacaaacagcaccgtgcctgttcccggttacttccgcctgtctcagacatatagctcttcaaaggtttatcaagacgttcagcggaacccacagcataatcacttcgctctacaacgtccggcccgtttcgacccctcaccgccatctcctactccgggggtggatacaggcaggagggagagtgaagcactgcctgaaccaccgccatgtgctccggatgaggacacccggacatcgaccgtagatggtttgtcctcccccgaacccaccgagagctgtgcagaaagtccagacaaacccgttaaaggagatggaacatctgaaaccaaagctaactggctgacagcgaagagtggccggaaaaagcgttgcccctacaccaagcaccagactcttgagctagagaaagaatttctcttcaatatgtacttgactcgtgagcgtcgcctggagatcagccgcagcgtccacctgacagacaggcaagtcaaaatctggttccaaaaccgaagaatgaaactgaaaaaaatgagtcgggaaaacaggagctatcgggagctagcgaacaacttcagtttttcgtgagacattcgtgcagtatttgactccgtcctccatcaatggccagagcgccttccttcgagaacctctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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