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2024-03-29 16:32:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001139571            1087 bp    mRNA    linear   VRT 10-JAN-2022
DEFINITION  Salmo salar homeobox A10b (hoxa10b), mRNA.
ACCESSION   NM_001139571
VERSION     NM_001139571.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D.
  TITLE     Differential evolution of the 13 Atlantic salmon Hox clusters
  JOURNAL   Mol Biol Evol 25 (7), 1333-1343 (2008)
   PUBMED   18424774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU025701.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF695321.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02597923, SAMN02597924
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa02"
                     /map="ssa02"
     gene            1..1087
                     /gene="hoxa10b"
                     /note="homeobox A10b"
                     /db_xref="GeneID:100194481"
     CDS             1..1020
                     /gene="hoxa10b"
                     /note="homeobox protein HoxA10b; homeo box A10b"
                     /codon_start=1
                     /product="homeobox protein Hox-A10b"
                     /protein_id="NP_001133043.1"
                     /db_xref="GeneID:100194481"
                     /translation="
MSCSDNHSGNSFLVDSLIHGRTESGASYYQSNGVYMPPGSEYSYGLPNRAFFSGFSKRNESNSQTMVPSSGPYSHIQGTETWLETSRSCRVDQPNNHQQIAHCSFSPSIKEENAYCLYESEKCLKGSTTREDISYSRLTPGSCPVTNSTVPVPGYFRLSQTYSSSKVYQDVQRNPQHNHFALQRPARFDPSPPSPTPGVDTGRRESEALPEPPPCAPDEDTRTSTVDGLSSPEPTESCAESPDKPVKGDGTSETKANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMSRENRSYRELANNFSFS"
     misc_feature    order(793..807,811..813,862..864,880..882,919..921,
                     925..930,937..942,946..954,958..963)
                     /gene="hoxa10b"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    799..960
                     /gene="hoxa10b"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(799..801,808..810,928..930,937..942,949..951)
                     /gene="hoxa10b"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..742
                     /gene="hoxa10b"
                     /inference="alignment:Splign:2.1.0"
     exon            743..1087
                     /gene="hoxa10b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgtcatgctctgacaaccacagtggaaactcgttcttagtggactccttaatccacggacgaaccgagagcggtgcctcatactaccaaagtaacggcgtgtatatgccaccaggctcggagtactcctatggactacccaaccgcgcttttttctcggggttcagtaaacgcaacgagagcaattctcaaactatggtaccctcatctggcccgtattcacatattcaagggacggaaacgtggctagagacgtcgagatcttgtcgagtagatcaaccgaacaaccaccagcaaattgctcattgttcattctctccgagcatcaaagaggagaatgcgtattgcctgtatgaatcagagaagtgtcttaaagggtcaacaacgagggaagacatttcctattcccggttaacaccgggatcatgcccggttacaaacagcaccgtgcctgttcccggttacttccgcctgtctcagacatatagctcttcaaaggtttatcaagacgttcagcggaacccacagcataatcacttcgctctacaacgtccggcccgtttcgacccctcaccgccatctcctactccgggggtggatacaggcaggagggagagtgaagcactgcctgaaccaccgccatgtgctccggatgaggacacccggacatcgaccgtagatggtttgtcctcccccgaacccaccgagagctgtgcagaaagtccagacaaacccgttaaaggagatggaacatctgaaaccaaagctaactggctgacagcgaagagtggccggaaaaagcgttgcccctacaccaagcaccagactcttgagctagagaaagaatttctcttcaatatgtacttgactcgtgagcgtcgcctggagatcagccgcagcgtccacctgacagacaggcaagtcaaaatctggttccaaaaccgaagaatgaaactgaaaaaaatgagtcgggaaaacaggagctatcgggagctagcgaacaacttcagtttttcgtgagacattcgtgcagtatttgactccgtcctccatcaatggccagagcgccttccttcgagaacctctt
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]