2024-03-29 20:20:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001122932 1305 bp mRNA linear VRT 05-SEP-2020 DEFINITION Oryzias latipes diencephalon/mesencephalon homeobox 1 (dmbx1), mRNA. ACCESSION NM_001122932 VERSION NM_001122932.1 KEYWORDS RefSeq. SOURCE Oryzias latipes (Japanese medaka) ORGANISM Oryzias latipes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias. REFERENCE 1 (bases 1 to 1305) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU048549.1. ##Evidence-Data-START## Transcript exon combination :: EU048549.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00029877, SAMD00029878 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1305 /organism="Oryzias latipes" /mol_type="mRNA" /db_xref="taxon:8090" /chromosome="4" /map="4" gene 1..1305 /gene="dmbx1" /note="diencephalon/mesencephalon homeobox 1" /db_xref="GeneID:100144387" CDS 1..1305 /gene="dmbx1" /codon_start=1 /product="diencephalon/mesencephalon homeobox protein 1" /protein_id="NP_001116404.1" /db_xref="GeneID:100144387" /translation="
MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLAGNNQFLIWLMFSTLNVTFHLMSLTFKLNCWCFLFLNGCTFQDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEASAAAEGSTEDAKAETASATTLAPESRTPPPPSSSSSCHSESERLAAPRPQAGEMSVEVNVTSPEPSDGESAVEDNADREEDEIRGEVRPKLREEVQEETAAQQRSSSPNCRRLSPTSESPLSSPALPASSSLTGGLAQSNSYASSPLSLFRLQEQFRQHMAATNNLVHYPSFDMSASSSLPYLGMNMPSPLGSLPCQSYYQSLSQAQQVWNNPLLQAAPGSLPGSLNSKTTSIENLRLRAKQHAASLGLDTLPN"
misc_feature order(322..336,340..342,391..393,409..411,448..450, 454..459,466..471,475..483,487..492) /gene="dmbx1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 328..489 /gene="dmbx1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(328..330,337..339,457..459,466..471,478..480) /gene="dmbx1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..456 /gene="dmbx1" /inference="alignment:Splign:2.1.0" exon 457..892 /gene="dmbx1" /inference="alignment:Splign:2.1.0" exon 893..1305 /gene="dmbx1" /inference="alignment:Splign:2.1.0" ORIGIN
atgcagcactacggcgtgaacggctactctctgcacgccatgaactccctgagcgccatgtataatctccaccagcaggcggcgcagcaggcacagcacgcgcctgactacaggccctccgtgcacgcgctcacccttgcagagagactagctggtaacaatcagtttctcatttggctgatgttctcaaccttaaatgtgacctttcacctgatgtcgttgacctttaagttaaactgttggtgtttcttgtttctcaacggctgcacatttcaagacattatccttgaggcccggtatggctcccagcaccgaaagcagcggcgcagtcgcacggccttcacggctcagcagctggaggctctggagaagaccttccagaagacgcactatcctgacgtggtgatgcgggagcgtctggccatgtgcacgaacctcccagaggcccgcgtgcaggtctggttcaagaaccggcgagcaaagttccgtaagaagcagcgcagcctccaaaaggaacagctccagaagcagaaagaagcgtctgccgctgccgagggatccacagaggacgccaaagccgagaccgcctccgccaccacgctggctcccgagtctcgcactcctcctcctccatcatcctcctcgtcctgtcactccgagtccgagcgcctggcagcgccacggcctcaagcgggtgagatgagcgtggaagtcaacgtcacctccccggagccgtcagacggcgagtcagcggtggaggataacgctgacagggaggaggatgaaataagaggggaggtgaggccaaagcttagggaggaggtgcaagaggagacggcagctcagcagaggagcagctctccaaactgcaggcgactcagccccacatcagaatcgccgctgagctcccccgccctgccggcctccagcagcctgaccggcggcttggcgcagagcaactcctacgcttcgtcccccctcagcctcttccggctgcaggagcagtttcggcaacacatggcagccaccaacaacctggtgcactacccatcctttgacatgagcgcgtcatcctccctgccctacctgggcatgaacatgccctccccgctgggctcgctgccctgccagtcctactaccagtctttgtcgcaggcccagcaggtgtggaacaaccccctgctgcaggcggcacccggcagcctgccggggagcctcaacagcaagaccaccagcatcgaaaacctccgtctgcgggccaagcagcacgcagcctcgctgggattggacacgctccccaactga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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