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2024-03-29 20:20:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001122932            1305 bp    mRNA    linear   VRT 05-SEP-2020
DEFINITION  Oryzias latipes diencephalon/mesencephalon homeobox 1 (dmbx1),
            mRNA.
ACCESSION   NM_001122932
VERSION     NM_001122932.1
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU048549.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU048549.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00029877, SAMD00029878
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="4"
                     /map="4"
     gene            1..1305
                     /gene="dmbx1"
                     /note="diencephalon/mesencephalon homeobox 1"
                     /db_xref="GeneID:100144387"
     CDS             1..1305
                     /gene="dmbx1"
                     /codon_start=1
                     /product="diencephalon/mesencephalon homeobox protein 1"
                     /protein_id="NP_001116404.1"
                     /db_xref="GeneID:100144387"
                     /translation="
MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLAGNNQFLIWLMFSTLNVTFHLMSLTFKLNCWCFLFLNGCTFQDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEASAAAEGSTEDAKAETASATTLAPESRTPPPPSSSSSCHSESERLAAPRPQAGEMSVEVNVTSPEPSDGESAVEDNADREEDEIRGEVRPKLREEVQEETAAQQRSSSPNCRRLSPTSESPLSSPALPASSSLTGGLAQSNSYASSPLSLFRLQEQFRQHMAATNNLVHYPSFDMSASSSLPYLGMNMPSPLGSLPCQSYYQSLSQAQQVWNNPLLQAAPGSLPGSLNSKTTSIENLRLRAKQHAASLGLDTLPN"
     misc_feature    order(322..336,340..342,391..393,409..411,448..450,
                     454..459,466..471,475..483,487..492)
                     /gene="dmbx1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    328..489
                     /gene="dmbx1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(328..330,337..339,457..459,466..471,478..480)
                     /gene="dmbx1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..456
                     /gene="dmbx1"
                     /inference="alignment:Splign:2.1.0"
     exon            457..892
                     /gene="dmbx1"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1305
                     /gene="dmbx1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgcagcactacggcgtgaacggctactctctgcacgccatgaactccctgagcgccatgtataatctccaccagcaggcggcgcagcaggcacagcacgcgcctgactacaggccctccgtgcacgcgctcacccttgcagagagactagctggtaacaatcagtttctcatttggctgatgttctcaaccttaaatgtgacctttcacctgatgtcgttgacctttaagttaaactgttggtgtttcttgtttctcaacggctgcacatttcaagacattatccttgaggcccggtatggctcccagcaccgaaagcagcggcgcagtcgcacggccttcacggctcagcagctggaggctctggagaagaccttccagaagacgcactatcctgacgtggtgatgcgggagcgtctggccatgtgcacgaacctcccagaggcccgcgtgcaggtctggttcaagaaccggcgagcaaagttccgtaagaagcagcgcagcctccaaaaggaacagctccagaagcagaaagaagcgtctgccgctgccgagggatccacagaggacgccaaagccgagaccgcctccgccaccacgctggctcccgagtctcgcactcctcctcctccatcatcctcctcgtcctgtcactccgagtccgagcgcctggcagcgccacggcctcaagcgggtgagatgagcgtggaagtcaacgtcacctccccggagccgtcagacggcgagtcagcggtggaggataacgctgacagggaggaggatgaaataagaggggaggtgaggccaaagcttagggaggaggtgcaagaggagacggcagctcagcagaggagcagctctccaaactgcaggcgactcagccccacatcagaatcgccgctgagctcccccgccctgccggcctccagcagcctgaccggcggcttggcgcagagcaactcctacgcttcgtcccccctcagcctcttccggctgcaggagcagtttcggcaacacatggcagccaccaacaacctggtgcactacccatcctttgacatgagcgcgtcatcctccctgccctacctgggcatgaacatgccctccccgctgggctcgctgccctgccagtcctactaccagtctttgtcgcaggcccagcaggtgtggaacaaccccctgctgcaggcggcacccggcagcctgccggggagcctcaacagcaagaccaccagcatcgaaaacctccgtctgcgggccaagcagcacgcagcctcgctgggattggacacgctccccaactga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]