LOCUS       NM_001104912             963 bp    mRNA    linear   VRT 25-JUN-2020
DEFINITION  Oryzias latipes NK2 homeobox 5 (nkx2.5), mRNA.
ACCESSION   NM_001104912
VERSION     NM_001104912.1
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF206723.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF206723.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00029880, SAMD00066541
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="10"
                     /map="10"
     gene            1..963
                     /gene="nkx2.5"
                     /gene_synonym="nkx2-5"
                     /note="NK2 homeobox 5"
                     /db_xref="GeneID:100125478"
     CDS             1..963
                     /gene="nkx2.5"
                     /gene_synonym="nkx2-5"
                     /codon_start=1
                     /product="homeobox protein Nkx-2.5"
                     /protein_id="NP_001098382.1"
                     /db_xref="GeneID:100125478"
                     /translation="

MFPSPSTSTPFSVKDILNLEQNQGVMVSSHEVSSRMDCCAVPTSSSSSSSSCMLARLKQEPLREMSSSTVTSMFGEEIHDSKASRAHALSFTSAFYGKVVMDMEMDKKSNEFEDERGKDDFGVRVELLEDSKPEDPDRPKPRRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDHLASVLKLTPTQVKIWFQNRRYKCKRQRQDQSLEMVSLPPPRRVSVPVLVRDGKPCLAADSTAYNPSYGMAPISHFTYNNYPAFSNYSSPTCNTNYACSYPAAAAAAQTMQPSSSSGNYMNFGDLNTVQNPFPSSNGSLHGIRTW"

     misc_feature    451..600
                     /gene="nkx2.5"
                     /gene_synonym="nkx2-5"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            1..355
                     /gene="nkx2.5"
                     /gene_synonym="nkx2-5"
                     /inference="alignment:Splign:2.1.0"
     exon            356..963
                     /gene="nkx2.5"
                     /gene_synonym="nkx2-5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgtttcccagccccagcacgtccactcctttctctgtcaaggatatattaaacctggagcagaaccaaggcgttatggtgtcttctcacgaggtttcttctcgcatggactgctgcgcggtgccgacatcctcctcctcctcctcctcctcctgcatgctggcccgtctgaagcaggagcctctccgggaaatgtcctcctccaccgtcacatctatgtttggggaggaaatccacgactccaaagccagcagagcccatgcgctcagctttacctctgcgttttacgggaaagtcgtcatggatatggagatggacaagaaatcaaacgagtttgaggatgaacgaggaaaagatgatttcggtgtccgtgtcgaacttttggaggactccaagcctgaggatccggacagacccaagccccggaggcgcaggaagccgcgggtcctcttctcccaggcgcaggtgtatgagctggagcgccgcttcaagcagcagcggtacctttccgcgccggagagggaccacctggccagcgtgctgaaactcaccccgacccaggtgaagatctggttccagaaccggcgctacaagtgcaagcggcagaggcaggaccagagcctggagatggtgtctctgccgccgccgaggagggtgtcggtgccggtgctggtgcgggatggaaagccctgcctggccgcggactcgaccgcctacaacccctcctatggcatggctcccatcagccacttcacctacaacaactaccccgctttcagcaactacagcagcccaacctgcaacacgaactatgcgtgcagttaccccgcagccgcagccgctgcgcagacgatgcagccctccagcagcagcgggaactacatgaactttggggacttgaacaccgtccagaacccgtttccctccagtaacggctctcttcacggcattaggacgtggtga

//