LOCUS       NM_001104820            1648 bp    mRNA    linear   VRT 24-JUN-2020
DEFINITION  Oryzias latipes distal-less homeobox 2a (dlx2a), mRNA.
ACCESSION   NM_001104820
VERSION     NM_001104820.1
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Stock DW, Jackman WR and Trapani J.
  TITLE     Developmental genetic mechanisms of evolutionary tooth loss in
            cypriniform fishes
  JOURNAL   Development 133 (16), 3127-3137 (2006)
   PUBMED   16831836
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ822515.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ822515.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00029877, SAMD00029883
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="21"
                     /map="21"
     gene            1..1648
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="distal-less homeobox 2a"
                     /db_xref="GeneID:100049449"
     CDS             158..991
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="distal-less homeobox 2"
                     /codon_start=1
                     /product="homeobox protein Dlx2a"
                     /protein_id="NP_001098290.1"
                     /db_xref="GeneID:100049449"
                     /translation="

MTGVFENLNTDMHSNQITSNSYHSLHKSQESPTLPVSTATDSSYYNGPQPGHCTGTPFGQLGSYQYHSNATGSVPYNAKTYELGFNSSYGAYSSYGSTNSPTPPADNEKEESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKQWKSGEIPPEQHVAASESPPCTSPPTTAWDFPQTQRMNSISSSLPQSISPPNTTAPSSFLTNYSWYSTTNSTTHLQSPLVQHHHGSAISAGTIF"

     misc_feature    242..472
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    order(536..550,554..556,605..607,623..625,662..664,
                     668..673,680..685,689..697,701..706)
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    542..703
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(542..544,551..553,671..673,680..685,692..694)
                     /gene="dlx2a"
                     /gene_synonym="dlx2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

ggtatcatcaaaggccgctgcgagaggagcacgcrctccgcttcttttttgtcacagtttgagcagggatgcgctttggttcaaacagctgagtcgtgtgtggtgggttttattattttttagtcgacttgatgcgcaaattttgatcaacttcaagatgactggggtttttgagaacctaaacaccgatatgcattccaaccagattacctcaaacagttaccacagcttgcacaaatcgcaggaatctccgaccctgccggtgtccacggccacggacagcagctactacaatggcccgcagcctggacactgcaccgggactccctttggccagctgggctcctatcagtaccacagcaacgccacgggttcggtgccatacaacgcaaagacctacgagcttggttttaattcgtcttatggtgcatacagctcttatggatccacgaattctcccactccccctgcagataatgagaaagaagaaagcgagccagaaatccggatggttaatggaaaaccaaagaaggtcaggaaacctcgaaccatttattccagcttccaactggctgcacttcagcggaggtttcaaaagactcagtatctggctctgccagaacgggccgagctggcagcctcactgggccttacgcaaacacaggtcaaaatctggttccaaaaccgccgctccaagttcaagaagcagtggaaaagtggagaaattcccccagagcaacatgttgctgccagcgagtctcctccgtgcacgtctccgccaacgactgcctgggactttccacagactcagagaatgaacagcatcagctcgagtttacctcagagcatcagccctcccaacacgacggcgccttcatcgtttttgacaaactactcatggtactccacgacgaactctaccacgcatctgcagtcccctctggtccagcaccatcatggctctgcaataagcgccgggacgatattttaggactggaaaaaaaaacactggggtgaaatcgggcaacaccggtgaaaaattaaaacaccaacaccttacacatttgcgcctttgtgcgcaaaacgcagcaaatggctggagtaaggttcctagaccttgccgggtttctccccgttagtagacacagattttgactgttatttttgtatttatttatttctatttgtgtgagggatgaatgaaccactactacccaaagcaatcacagactacatgggcgcaagctcacctttacgcggacgtcactttttttgggtcctttcttgtgcaaacagcagcaggacagcctttcacagatgtagcacaaattactgtattgtgccttttttcagtatgacctcatcttctcgtggggggtggggggtaaaattgtgtacattctacagttgatttaaaaacgttgagggggaggctaaacagacccacgctgtaaatattttaccacagctttatgatgtctttttttattaggctttctggaacaaattcaataatcaagtaagctactgattccccaacactctgactggcttgtatttagttcaaatttgtatttytgtctyatttattttttagcagtgttccatatggccaaaccttatttaaataaaatgtttcctgtgaatt

//