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2024-04-24 12:55:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001097625            2538 bp    mRNA    linear   VRT 26-JUN-2020
DEFINITION  Takifugu rubripes taste 1 receptor member 2 (tas1r2), mRNA.
ACCESSION   NM_001097625
VERSION     NM_001097625.1
KEYWORDS    RefSeq.
SOURCE      Takifugu rubripes (Fugu rubripes)
  ORGANISM  Takifugu rubripes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea;
            Tetraodontidae; Takifugu.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and
            Abe K.
  TITLE     Two families of candidate taste receptors in fishes
  JOURNAL   Mech. Dev. 122 (12), 1310-1321 (2005)
   PUBMED   16274966
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB200910.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB200910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN07340849 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Takifugu rubripes"
                     /mol_type="mRNA"
                     /db_xref="taxon:31033"
                     /chromosome="3"
                     /map="3"
     gene            1..2538
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="taste 1 receptor member 2"
                     /db_xref="GeneID:100037833"
     CDS             1..2538
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="taste receptor, type 1, member 1"
                     /codon_start=1
                     /product="taste receptor type 1 member 2 precursor"
                     /protein_id="NP_001091094.1"
                     /db_xref="GeneID:100037833"
                     /translation="
MQLQMKMLVAVLSATPLMLQLVTGELDYSTHGQGMQLHGNFSIAGFFPLHYGEKLDGSLPALELCKDGEINKHGFHLLQAMKLAVDEINKDAGTQALLPGVVLGYQLYDTCTVSAGILASLDVLEYWSPSASGKVPNFDISQRPLAVIGPDSSSNSFTPATLLGAHLIPQISYEASNEMLSNKVLYPSFFRTIPSDKNQVAAMIQLLVRFNWTWIALLGSDNSYGLEGMQSLSQQAPEFNICIAYQGVIPGYTQDTVQVMRNIVDSILKTKVTTIVVFSSKSKLSKFMPFVIEQKVTGKVWIGTEDWSPSSLISGIPGIHTIGTVIGVAVKYTIIPGFEKRLVEASLHQSNDGNASNVTANLSNTCLQSRDLYSLAEMNFPLDNYDITSAINVYKAVYAVAHALHQVLDCDSGECQRKRVYPWELLSRLKQVRFLMANSSVYFDSNGDPPTGYDIICWVWHGTEWSVRRVGSFSPNPISLTIDADKIEWHISGDSRSVPQSICSPPCEPGHRRLLTGQHSCCFDCQACSEATFLNTSDPTSCQDCLPEEWAPKSSERCLKRTPLLLEWDHHLSIALLFFLACCLLMTSSSAVILLLNINTPVAKSAGGRTCLLMLAALTAAAMSSLCHFGQPSPLACILKQPLFTFSFTVCLACITVRSLQVVCIFKFASRLPPAYDKWSKKQGPEVTIFIVSVTILCISVLRVAVGPPEPSQDLDFYMDSIVLECSNTLSPGSFIELCYVCVLSVLCFFFSYMGKDLPANYNEAKCVTFSLMVYMISWISFFTVYLISRGPFTVAAYVCATLVSVLAFFGGYFLPKIYIIVLKPQMNTTAHFQNCIQMYTMSKQ"
     sig_peptide     1..72
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    109..1470
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     Region: Periplasmic_Binding_Protein_type1; cl10011"
                     /db_xref="CDD:447875"
     misc_feature    1495..1653
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="Nine Cysteines Domain of family 3 GPCR; Region:
                     NCD3G; pfam07562"
                     /db_xref="CDD:429539"
     misc_feature    1756..2469
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:452889"
     misc_feature    1822..1887
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    1912..1980
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    2059..2109
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    2188..2259
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    2293..2361
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    2374..2451
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
     exon            1..200
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
     exon            201..510
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
     exon            511..1272
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1491
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1612
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..2538
                     /gene="tas1r2"
                     /gene_synonym="tas1r1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgcaactgcaaatgaaaatgcttgttgccgttctgtctgcgacccctctgatgctgcagcttgttaccggggaactggattattccacccacggacaggggatgcagttgcatggcaacttttccatcgctggcttctttcctctccactatggggagaaacttgatggcagtttgcctgcgctggaactctgcaaagatggtgaaatcaacaaacatggatttcacctgttgcaagccatgaaactggctgtagatgaaatcaacaaggacgctgggacccaggctcttttaccaggggtggtgttgggttaccagctgtatgacacgtgcacagtgtcagctggtattctggcctcgctggatgttcttgaatactggagcccctctgcatctgggaaagtcccaaacttcgacatcagtcaaaggcctctggctgtgattggtccagacagcagcagcaattctttcacgcctgctactcttctaggagctcatcttataccccaaatctcttacgaagcctcaaacgaaatgttgagcaacaaagtgctctatccctcctttttccgcacaattcccagcgacaagaaccaggtggcagcaatgatccagctgctggttcgtttcaactggacctggatcgctctcctcggcagtgacaatagttatgggctggagggaatgcagagcctttcccagcaagcacctgagttcaacatctgcatcgcctaccagggagtcattcctggatacacacaggacacagtgcaggttatgaggaacattgtggacagcatcctgaagaccaaagtcacgaccattgttgtcttctccagcaagtccaaactttccaagttcatgccttttgtaatagaacagaaggtgacagggaaggtgtggattggcaccgaggactggtcgccatcttccctgatatcagggatacctgggattcacactatcggtacagtgatcggtgtggctgtaaaatacaccatcataccaggtttcgagaaaaggttagtcgaagcatcgttgcaccaaagcaacgatgggaacgcctccaacgtcaccgcgaatctcagcaacacttgtctgcagagcagagacctgtacagcctggcagagatgaacttccctctggataattatgacatcacctccgccattaacgtgtataaagcggtttatgcggtggctcatgctctgcatcaagtcctcgattgtgattctggagagtgccaaaggaagagggtctatccatgggagcttctctccagactgaaacaggtccgattcttaatggccaactcatctgtttactttgattcaaatggcgacccgccgacaggatatgacatcatttgctgggtttggcatggaacagagtggtccgtcaggcgcgtgggctccttcagccccaatcccatttccctcacaattgatgctgacaagattgaatggcacatctctggagactccagatccgtgccacagtccatctgctctccaccatgtgagcctggccacaggaggctgttgacagggcaacactcctgttgctttgactgccaggcctgttcggaagcgacgttcctaaacacaagcgatccaactagttgccaggactgtctgccagaggagtgggcgcccaagagcagcgagcgttgtctgaagaggactcccctgcttctggaatgggaccatcatctgtcaattgccctgcttttcttcctggcctgctgtcttctcatgacctccagctctgcagtgatcctcctgctcaacataaacacgcctgtggccaagtctgctggaggccgcacctgcctcctgatgctggcagctctgaccgctgcggccatgagctctttgtgccactttggccagccgtctcccctggcttgcattctcaagcagcctctattcacgttcagcttcactgtgtgtctggcctgcatcactgtgcgctcgctacaggtcgtctgcatttttaaatttgcctcgcggctgccgccagcctacgacaagtggtccaaaaagcaagggccagaggtgaccattttcatcgtgtctgtcaccatcctgtgcatctccgtgctccgtgtggctgtgggtccccccgagccatcccaggacctcgatttctacatggacagcattgtgctggagtgcagcaacaccctctcacctggttccttcattgagctttgttatgtgtgtgtgctgagcgtcctctgcttctttttcagctacatgggcaaagacctgccggccaactacaatgaggctaagtgtgtcaccttcagcctcatggtgtacatgatctcctggattagctttttcacggtctacctcatcagcaggggccccttcaccgtggctgcttatgtttgtgccacactggtcagtgtcctggccttctttgggggctacttcctgcccaaaatttacattattgtgctgaagccccaaatgaacaccactgcccatttccagaattgtattcaaatgtataccatgagcaaacaataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]