2024-04-18 14:19:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001081486 774 bp mRNA linear PRI 03-APR-2023 DEFINITION Pan troglodytes goosecoid homeobox (GSC), mRNA. ACCESSION NM_001081486 XM_522943 VERSION NM_001081486.1 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ977363.1. On Feb 10, 2007 this sequence version replaced XM_522943.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..774 /organism="Pan troglodytes" /mol_type="mRNA" /db_xref="taxon:9598" /chromosome="14" /map="14" gene 1..774 /gene="GSC" /note="goosecoid homeobox" /db_xref="GeneID:467546" /db_xref="VGNC:VGNC:3412" CDS 1..774 /gene="GSC" /codon_start=1 /product="homeobox protein goosecoid" /protein_id="NP_001074955.1" /db_xref="GeneID:467546" /db_xref="VGNC:VGNC:3412" /translation="
MPASMFSIDNILAARPRCKDSVLPVAPSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRPVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKASPEKREEEGKSDLDSDS"
misc_feature order(481..495,499..501,550..552,568..570,607..609, 613..618,625..630,634..642,646..651) /gene="GSC" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 487..648 /gene="GSC" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(487..489,496..498,616..618,625..630,637..639) /gene="GSC" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 637..771 /gene="GSC" /note="propagated from UniProtKB/Swiss-Prot (A2T733.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 1..355 /gene="GSC" /inference="alignment:Splign:2.1.0" exon 356..615 /gene="GSC" /inference="alignment:Splign:2.1.0" exon 616..774 /gene="GSC" /inference="alignment:Splign:2.1.0" ORIGIN
atgcccgccagcatgttcagcatcgacaacatcctagccgcccggccgcgctgcaaggactcggtgctgccggtggcgcccagcgcggcggctcccgtcgtcttcccggccctgcacggggactcgctctacggcgccagcggcggcgcctcctcggactatggcgccttctacccgcgccccgtggcccccggcggcgcgggcctcccggccgcggtcagcggctcccgcctcggctacaacaactacttctacgggcagctgcacgtgcaggcggcgcccgtgggcccggcctgctgcggggccgtgccgccgctgggcgcccagcagtgctcctgcgtcccgacgcccccaggctacgagggccccggctcggtgctggtgtccccggtaccgcaccagatgctgccctacatgaacgtgggcacgctgtcgcgcaccgagctgcagcttctcaaccagctgcactgtcggcggaagcggcggcaccgcaccatcttcactgacgagcagctcgaagctctcgagaacctcttccaggagaccaagtacccggacgtgggcacgcgcgagcagctggcccggaaagtgcacctccgcgaggagaaagtggaggtctggtttaagaaccgccgcgccaaatggaggcggcagaagcggtcctcatcagaggagtcggagaacgcggagaagtggaacaagacgtcgtcgtcgaaggcgtcaccggagaagagggaagaggaaggtaaaagcgatttggactcggacagctga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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