2024-04-23 15:27:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001009335 1196 bp mRNA linear MAM 17-FEB-2022 DEFINITION Ovis aries homeobox C6 (HOXC6), mRNA. ACCESSION NM_001009335 VERSION NM_001009335.1 KEYWORDS RefSeq. SOURCE Ovis aries (sheep) ORGANISM Ovis aries Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U33049.1. ##Evidence-Data-START## Transcript exon combination :: U33049.1, ERR3458994.340903.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA104494974, SAMEA104494977 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1196 /organism="Ovis aries" /mol_type="mRNA" /db_xref="taxon:9940" /chromosome="3" /map="3" gene 1..1196 /gene="HOXC6" /note="homeobox C6" /db_xref="GeneID:443349" CDS 13..474 /gene="HOXC6" /function="unknown" /note="homeo box C6; Antennapedia-type homeotic factor" /codon_start=1 /product="homeobox protein Hox-C6" /protein_id="NP_001009335.1" /db_xref="GeneID:443349" /translation="
MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGAAADSLGGKEEKREETEEEKQKE"
misc_feature 13..114 /gene="HOXC6" /note="propagated from UniProtKB/Swiss-Prot (P49925.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 130..147 /gene="HOXC6" /note="propagated from UniProtKB/Swiss-Prot (P49925.1); Region: Antp-type hexapeptide" misc_feature order(190..204,208..210,259..261,277..279,316..318, 322..327,334..339,343..351,355..360) /gene="HOXC6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(196..198,205..207,325..327,334..339,346..348) /gene="HOXC6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 199..357 /gene="HOXC6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 364..471 /gene="HOXC6" /note="propagated from UniProtKB/Swiss-Prot (P49925.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" ORIGIN
ggggagaaagacatgctctcaaactgcagacaaaacaccttaggacataacacacagacctcaatcgctcaggattttagttctgagcagggcaggactgcgccccaggaccagaaagccagtatccagatttacccctggatgcagcgaatgaattcgcacagtggggtcggctatggagcggaccggaggcgcggtcgccaaatctactcgaggtaccagacgctggaactggagaaggaatttcacttcaaccgctacctaacgcggcgccggcgcatcgagatcgccaacgcgctctgcctgaccgagcgacagatcaagatctggttccagaaccgccggatgaagtggaaaaaagagtctaacctcacgtccacgctctcagggggcggcggaggggccgcggctgacagcctgggcggaaaagaggaaaagcgggaagagacagaggaggagaagcagaaagagtgaccaggactgtccctgccacccctctttctcctgctccctcgctgcccccataccctcctaatcacacactcgatatttatcactggcacaattgatgtgtttggactccctgagacaaaattagggagtcaaatatggacctgaagagtcaactctggacgcccccctccctcaccgcacaaactcttttcaccaggcgcctcctcctcctcgctccctcgctagctcgttctcggctcgtctgcaggccccttcgcccgcccaggccttggggctcgtcctgaacctcgctttagactccacagatctccctccaaacgaggacttggcctcccaccccctcggcgccccccatctccgcccccgcgcagagagccggctcccgggccccggggctctgctcccggcctcggggcctcgcagccgggagggcgggaggcaggagggcgtcggggccccacagcagcccccagggcctccccgcagcccctgcccggcccctctgccccagcaaatgcccagcccaggcgaattgtatttaaagaatcctgggggtcattatggcatattacaaactgtgaccgtttctgtgtgaatatttttagctgtatttgtggtctctgtatttatatttatgtttagcaccgtccgtgttccaatcccatcttaaaaaggaaaaaaaaaaaaaaagagggaaaattacaaaaaaaaaaaaaaaaaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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