ver.2
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Previous release (v1)
2024-03-29 07:19:20, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
tggtgctgcgctccagagaggcagaaaacgagtgggagctgaggtgtcttaaagccgttcctcagcctgggagaagatctctggcttcaggatggaggtcagggggtcgttcctggcggcctgcaggagacgcatggctacctggaggaagaatcgtgacaaggatggcttctcaaatcccgggtaccgagtccggcagaaggatctgggcatgatccacaaagctgccatcgcaggtgatgtgaacaaggtgatggagagcatcttgctcaggctgaatgacttgaacgacagggacaagaagaacaggactgctctacttttggcgtgtgcccatggccgtccaggagtggtagctgacctggtggccagaaaatgccagcttaacctcactgacagtgaaaacaggacagctctgatcaaggctgtacaatgtcaagaagaagtttgtgcatccatcctgctggaacatggcgccaacccaaatgttagagatatgtatggcaacactgctctgcactatgccattgataatgagaatatatcaatggcaagaaaactgcttgcatatggtgcagatattgaagcaagaagccagga...
position 382
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 caaggcctatctatctagattcttcttggcctctctgagcatgcattcctgagactccaagaagaatctagacagataggccttg
position 58
GR, Caulfield M and Munroe PB. CONSRTM Wellcome Trust Case Control Consortium TITLE Genome-wide association study identifies eight loci associated with blood pressure JOURNAL Nat Genet 41 (6), 666-676 (2009) PUBMED 19430483 gtgatcaaagctggaccttttcagagaaggtctcgaatcctgaagacagacttcgaggggatgatgcagcaagaagacccacaccagatgagggcgccttgatattggatttcccagcctccagaactaagcctgggacttgcctctgtgatctggtgctttggagggccttgggcctcagggctagcaaggtccctttctggagattccagttcctctgcccgccctcctttacctctttctcctcacacatctgtctgagggatggggatgagggctgccaaccaatgttaccacttgacagaccacaagagggctggttccagtgcctcccttgttcagctgctgacactgcagcttggcagtcattgaaggc...
position 70
REFERENCE 1 (bases 1 to 134) AUTHORS Jorjani H, Kehr S, Jedlinski DJ, Gumienny R, Hertel J, Stadler PF, Zavolan M and Gruber AR. TITLE An updated human snoRNAome JOURNAL Nucleic Acids Res. 44 (11), 5068-5082 (2016) PUBMED 27174936 atgcatctatttgacagacctggagcagttgctatctgctgctatggtttccaccacagatgcaagaagaacatgtccttgcgctttccgtctgtctaattgtggcagctgagattgaatagaggaatacagga
position 63
TITLE Genome-wide association study identifies eight loci associated with blood pressure JOURNAL Nat Genet 41 (6), 666-676 (2009) PUBMED 19430483 atgcgcagccctcgggccggcccgggcgcaccttttctgtctcctgccacattgtgagcgctccgccgcccagataaccgccggctccccgcgccgcccccgccttctcccactccgcccactgccgggagcccaggggatgatgcagcaagaagacccacaccagatgagggcgccttgatattggatttcccagcctccagaactaagcctgggacttgcctctgtgatctggtgctttggagggccttgggcctcagggctagcaaggtccctttctggagattccagttcctctgcccgccctcctttacctctttctcctcacacatctgtctgagggatggggatgagggctgccaaccaatgttaccacttgacagaccacaagagggctggttccagtgcctcccttgttcagctgctgacactgcagcttggcagtcattgaagg...
position 149
gene="LOC105374820" /replace="a" /replace="g" /db_xref="dbSNP:1420392235" variation 356 /gene="LOC105374820" /replace="c" /replace="t" /db_xref="dbSNP:1671599486" ORIGIN // aaagtgggcagattgacatttctggcagaaccctaggagcagaaaaaaaatctgaaaaacaaataagcacctgtgatgccctgtgactacagagttccagtagaactataatctgtggaagttcaagaagacttaaagcaggtacaaaagcagccagagtcactcctatctccattgcttacatgagtgagagatgtgagtattgcccagtggaacagatgagaagtaatcacagatattattgcaaaaatcagaaagtcaaagaacaacagaactcatttgactgtatggggcctaagaacttaccagtgagagagaaatgcacagcacagtatcatatttaaatacaatgagctagcaaaaaa
position 124
variation 397 /gene="LINC01905" /replace="a" /replace="t" /db_xref="dbSNP:922356882" variation 398 /gene="LINC01905" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:933630941" variation 406 /gene="LINC01905" /replace="a" /replace="g" /db_xref="dbSNP:141259871" ORIGIN // tgatgcagcaagaaggcccttgccagatgccagcaacttgatattgaacttctcatcctccagaatggtttgcctctctgtcatacctcaagaggaacacaaagagtgatggcctgtcactctgatgcctctctctactcaaatggcagaaaccaaccaggtgatggccacagtggcagaacctaggaagccaagaagaaaccagagaatggagacacatggcagcaatggcaagtcatcagacccaggatttcccaaagaacactggtccaggaagatgctctgtgaaaaagtgttccctggtcggagaaatttgtgaaac...
position 197
t" /db_xref="dbSNP:1717272721" variation 403 /gene="NAALADL2-AS3" /replace="a" /replace="g" /db_xref="dbSNP:1717272190" variation 405 /gene="NAALADL2-AS3" /replace="a" /replace="t" /db_xref="dbSNP:1717271665" ORIGIN // cctatgacagacaaggcaagctctactctcagaagcaaaaattatatatctaggagtcagagtatgaatcaagaagaatggacttctgcttcttatctacctaatgccagataatgatgacagcaatgcattttctacattcatatcctcaatcatatggaatgcttactggaaaaccggtttaaaagaaaggtgactagttattggtcttgctctgacagccgtggaaaccatttgctgatgaaagcacaagcaacaacaacaaaaaagatgaataaactggatttcaacaaaaacacatttgtgcttcagagaacataatcaagaaagtgaaaaggcaacccaccaatgggagaacacagtttcaaaacatatatctaa...
position 70
replace="c" /replace="t" /db_xref="dbSNP:1447795758" variation 470 /gene="LOC101929427" /replace="c" /replace="t" /db_xref="dbSNP:1946482037" ORIGIN // caggcaattcaccaggacagaggcctttcaactttcctccctgagatcttcctccgtgaaccaacaacaaaaggaccagccacctcactggtcctctgttgccagtagaaaaagccctacaaggattaatgcaagaagaagttctgctttggggttctatgaggctgaaaatattggatcagtattcctgaggaatctgcgtttcagaatcccaggtccggaaggacaagaagtactttgcaaacaaatcaaatgtacgtttaggaagatgaaatcatgcaacagaaagacagaacagcaacagattttacacacaattcagaaggaagaaagaacagatgagtttgggaatcaggagaccagatgtcaagactggactacatctttatattcatttccagatttaaagttctatgttgtattttatttgatgcaaagcaataaaata...
position 132
gaggttgcagacataaacacaggattcatcagcatatgtgtggtttctgaacctatgggacaggatggcatcactcagggaaagagcacagagtcagaagaaaatatgacccaagaccaggccttgaagaactccgatatttaatgtttgggtagaagaaaaggcaaacgaaagtatctgaaaagatgggccagagaagagagaatcaaccaaggggagatggtcccagaagtcaaacagaagggagtgattcgctgtgatgaatgctgcagaggccaaataaggaaaagaagacagcaagaagaagccactttgagcccctatgatttcatctttgatccactcatccagcactccatactccttgatccctacccaccaaattctccttaaaagccctggtctccaaatgttcaaggcgaccgatttgagtaataaaactctagtctcccattta
position 364
PUBMED 15740594 REMARK GeneRIF: Expression of gene HSPCO16 resulted in the apoptosis of these cells, which suggested that the apoptosis of dermal papilla cells might be associated with the expression of gene HSPC016 in vitro. gtttccggtggcagggtctggggaagcggcggcaggcgccatgtccggccgcgaaggtggcaagaagaagccactgaaacagcccaagaagcaggccaaggagatggacgagataaggctttcaagcagaaacaaaaagaggagcagaagaaactcgaggagctaaaagcgaaggccgcggggaaggggcccttggccacaggtggaattaagaaatctggcaaaaagtaagctgttccttgtgcctgaggagatggtgaccctttatttcatctgtatttaaacctctctattccctgccataacatcttttgccacgtatagctggaattaagtgttgtcttggagctgttgtacatttaagaataaacttt...
position 61
loci and evolution of casein gene family JOURNAL J Mammary Gland Biol Neoplasia 7 (3), 327-345 (2002) PUBMED 12751895 REMARK Review article attttccactgtgtagtccactggtcttctatttgggaaacaaggaccaaacaaccatgaagttcttcatctttacctgccttttggctgttgctctggcacatcatgagataaagcactcctcctcttccagtgagtaatctgccagcatctaccaagaagaaactgcaaataaaatagatacgatgcaatcttctagcagtttatccagtggggaatctgctcaagtatccactgaaaacaatgaactgactaaggaaggaaggatctacttaaagcacatggaatctaccagcatctcccaagaagaatctgctgaagtattccctgagacgaaaaccaaccagtttctccagaagttcactgtcccccagtatgtccaggctgttccccttgtagtctatgagcctgtggaatcacattcaggaaaacacctacccatatattcccatttagaaga...
position 156
cctagtgtgtctgaggaaatccaatctctcccactccagcccgcctactcattgaacatggctgctatctctgtcttctggaaacacggctccaatcctgcaacaactctatacaagagctcccagtggttcttaaccttggctgagcaacagacccatttgggaagaaaaaatctagcttatgagatacctcagatcaatcaatccctggcagtgggtctgctaaacatcagatacagacaaacaactgcatagatctccaactagattgaagaacaggaccctccagagagcttccaagaagacaccaacctaggcatgggtttatgttcctgacaaagaataaggattgttatgaagaatgttctattttgaattgtgaaaataattatttaaagctgtacaaaaaaaaaaaaaaa
position 443
tcaaaagggaaatagtactcatcgaagatgtgcctttgctaggaactaggacaagggtggcctttataaattcatgaagagaaggagccagcatatgaacttgctgcctatctttagcaaggagatgcaaatgacatccacaaacctcttctgctgtatacctggatgaaagcaaggctagctgtgtgtcctatggcaccaaggactgaaagattgtaagaagtaagagtccatcatagaggccaagccaaatacaactatgttttcaagcataagatggatagatgtggtaaaccacaagaag
position 559
ggatggcggtgacgggcgcagggagcggggcccggctctccttgcctcgaggctcctctgattccactcgcgtggctgcgcggccctggcagcggccttcgtcccgggggtgggagctacacagggttccgccccgtcctggcgaggacgcctgagggggctctgtggtaaggctctgtcgggcaggccgggcttccgggaggacctggtctggatcggtcaccgctgggtgcctgagctccgcatggagcctgcagcctttgtttaacttataaagaaatgggggctccgagcagtcaagaagaacatgccccaagttattcgtcagtgaggcggaaattgtggtgtacttgttccagaccaactatgaagataggatgcccatccagaagaacgggaagcattttcttcctcacctttggaaagtaaaacaaaaaaaaaaagaaaaa
position 418
ggcagatggcatcggggacacagggaaacctgaccttagaggaaatggaaaagttggagagacactgagcactgatacgaaataattctcttgctgaaatacacgaaaggagtcccagcagccatattagtatttccacgtcctgtgtcagccccaagtagagagaacttggaatgggaggggaaatggcagccatcaggaaatgaaatgctggcccagagaattctaagcaagtcaatcaccagtccaaaggaaaggccatgtgaggacataaggaggagacagccatctataagccaagaagaaagccctcactagaaaccaactctaatggcaccctgatcttggatttctagcccctggacaatgagaaaataaatgtctgttgtttaaaaaaa
position 471
MA. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 ataattgctgccaaaatcatcacaagctgtacgtcatcaaggctccctttgcactcccaagaagaactgttcattttaaacaaaagtgatgagaattcctccagaggtgggaacagagaaaacttcatgcttggtaaagcacctgaggcacccattacaatctgggacaagatgaggacatcaacactcatgctgtattccacatgggaggccaagtcaacgcaagatgaaagagatataagagccaggcgcggtagctgacacctgtaatcccagcactttgggaagctgaggtgggaggctcacttgaggccaggagatcaagaccagcctaaccaacaaagcaagaccaagaccccttctcta...
position 58
human genes JOURNAL Genome Res. 16 (1), 55-65 (2006) PUBMED 16344560 gttggcctctgacccctcctcccgctgatgccaatgacaggaaaccagagactctctgcctcagagactacagggagagagggaggatgggcccaaggtgtattcctcttacgatgcccacccttaactcaccgtgcattgcctgagggccctgggctctcagtctgcattgattggagctgggaccgaagcccccattccagaaaccggaccaggagataggcaaacaagaagaagccacccaatgtgagaaagaaataagcaacgggggtgatgtccgtctttatgcccagcaaagccagccccagtaggaaggaggcgcagcacaggaggagaagcggcttctccagtctccccagttcttcaatctcaaataaatcatctgtagagtcccctccagttccgaaattctctctatgtcttggagtgtgtggaatagccaggaaaccagcccaggagctttgactcccagccattctgcaccttaagcaaaaaggaagttagccacacatggtggctcatgactgtagt...
position 228
atacagtgtttctgcctatttgattaacgatgactatgaaagcacaaatttgggggcctgcaatgtatacagccatattggaaaaaattggactcgattcttactgaaataaccagtgttgggctgtgaaggtactgtgggaaatgctttggaaggtgcctttaaaagaatctcaaaatattgctttcctttccttgagcgagaccgaaaaactttagaaaaagaaaagctcatacctagaacaaaggaccacgctgaatgcatattctagagcacatttcacatccctcgcgtcaacaagaagaagaagaggagctttgatgcatttcagtctacaagttgacatcacaaaagtgctggaagcagccgtggtttcggaagggagctagaggcagaacgagtgtggatgctgagagatccctgactgtgactgctacatatttcagctgcgtagtcacatatatacaagattccctgcacttacaaccaaaatgataacaaatgctctcatttgggattttgtttgatagtcattaggatattttataagtctttccaagcacaaggcaaagagaaatgtgacaaataaggcaacatatt...
position 612
gatggacgtgaagatccactgttgtgggaggagtggaacactaacactgaatgatggaggctgtggtcagaaacagggattagcaacccactctccaccaaatttcaagtcactaggggcattatgctatgtcccaggagtggccaaggcttcaaggaccaatgatagacctgctgctctaacctaggcctgctgaggagtacaattcaacctgtgtttctgtgtggttcagcaatcttgctgagctcctctaagtcagtccatcctgccacagctgggaagaatcaagaaactctccaagaagacgtttattggttgataaaaatctgtttatctgcctgttgccaatgagaagacaggtctgctgaccatggcaggcatggcagcacgtgacaccgtgtttgctgctcactgcatgttccacctgaactttcccgtccggtcaatgagtcttgacagtggggtgaaggggactcactctcaaagaccaaggctgacccgctttgagtacaatgccttgacctagttactgtcactgtggttttgtcttcaggaactaaaaggtacaataaaaacttgttcattt
position 356
tctgaaatgagagaaattgcagaaattctccctgctcaggaaaaggtagaggcaaggattgacttaaagatgggtaagaagcgtgttactgatcataagctaaatgtggacaaagtaattaaaaatattaacacaatttcttcggagttgaagaagataaaagatttgcatcacatgctgatgcttacagcagccacagctaaggggactgggactgccaagaccagtttggaccactcagaacttactacaggagctggggaaaggaacacctcaaacaaaatcaagctgtgactccaagaagaagagggcatggccgttcgttaggcaccaaataagctctcccagttattgctttgtgaccttatcctacattttaatcatcccatcaagactgagaacttagcagaagcagaaagaaacaaccccctctttgaagagtctaaaatatcagatgtatcccttgtttctaacagctatctgatttcttatttgttatgagtttctgttttattgttgaactaacaaatatttgggagagttgagtttactaatttgtatatatataatttaaaacaaaataaaaataatgtaaacaag...
position 336
gene="LINC02462" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1727308483" variation 639 /gene="LINC02462" /replace="c" /replace="t" /db_xref="dbSNP:1288517234" variation 640 /gene="LINC02462" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:116434665" ORIGIN // gggaaacaagaagaatcctagatgtctcaatgagatgaagaattgcctactgtttatcaccctgacccagtctttctccccaagacaagttctggaaactaaaagtccatgatcaaggcatcagcagatcaacgtctggtaagagtcagcttcctgatgagcagatgcctccctgacttaatctcacttgttggagagcaagaaaagaggatgttttcctgtcacttcctataagggtgctaatcacagtcatgtgagctccactcttatgacctaattatctcccaaaggctccatctcctaatatcatcatattgaagaa...
position 7
type 1 patients JOURNAL Genes Chromosomes Cancer 35 (2), 113-120 (2002) PUBMED 12203774 ttccatccggctatgacttccgcaagacaatccacttctttgcatttctgtctatctccctgaaagaagacattggtgattccccaggtctcctacaactctgaaattttgattccaggcaatccatggggcagacatccttatttgacagatagagaagatgtcatggccctgtaagtcaagagaacaggatggccaaaggcaagaagaaaaagacactggaaggggcccctttctccttcagagagcctcgttcttacacaagggccaagaaacaggacatctaaggacttggaagccccaggcacgtgacccccggcctctctgttctccagctaaggaacgctttatggccttcgcatttattcatgtatttcctggacctactttgtactaggccaagggaagtgagctgaataagacccagcggggttgagagacataaaaatggcttattgaaattcaatactccaagggctggaagagatggatgagtagcgagccggaggagc...
position 208
variation 652 /gene="BTBD9-AS1" /replace="a" /replace="t" /db_xref="dbSNP:923393222" ORIGIN // cctgcctccacactaccccctctcccctaatgaggctggcagcaccatttgctagcacctggcagatgagagagaaagaaaacctggtgtggagacccccatccattaaaggcaagagagtgaaaagtgggagagaaagctcccaagttcaacagcagtgacctagggtcatgcagtgaggacttacaaagtccaagaagaaagcatttggagaagtgctacacatgctcaactgaacttcctgtcaaattgttctcactcgtttgggcacaagtctgcttaagccatctctcattaacatttactcttgcccgaagccctctacgcccccaacccctgctaatcttccacaagcaagctgatcacactgggatctccttttcccagacacgtttgattctcactttctcctgaacctagaaatgtgcttcccaccaaagcatgccaggcactaactcgtccctactgaaaggggctgttaaaagctcatcttctttccagatgg...
position 194
aatggagtgagagagatcaatgctggacccaagatgattaacgtgccaacctggggcactggcgctagggagatggtcagatcgatggattccaagcaaatgaagagcctggcgcattcggcagccaagctgtgaagttaaacacagcgacggggccaggcgtttggtgagcgatgagggtgatgaaacaggacacatatatcttgggaaacaacactgagaggccagatctggttctgaaaaatgtctttgctccttgtcacctttcaaaggcaaaatcacagctctgacaaataccaagaagaattcccaggtgtgtctgcagccgtgaaaatgtgacatgagtcacagtgtcttcggaggaaatgaaagaccacaggacggggacatggcatcatgaaaaaagatgctttgtgattttcaacatatggtgacacttttcctaatttagagggggaagctgggttttgagttttcttttatcctccctctttgttaaaagcaagagaaagaagatttaaagaacatctgtgtattcaaatgatagaaatagaattatacactttcaaaaacaa
position 401
cctcccacctcacagtggtcatcatccactatggctgtgcctccatcatctacctgaagcctaagtcccagagttccctgggacaggacagactcatctcagtgacctacactcatcactcccctactgaaccctgttgtgtacagcctgaagaacaaggaggtcaaagatgctctgcacagagccgtggggcaaaaaactctgtctccttaatgaagagaggttgtgaaggcttttcctttgcgtttataaatatgtactaaaatgctctttcaataatgcccttatgtatgggatcaagaagactagactaaattgaactgagtgctaaaactggaggtttctgtttgaggttgtt
position 1130
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 tttctcctcgctgcccgcacatcctgctccacagggcagagggaggccaagaagacctctgcactgtgagttggctggctggaggaa
position 48
agcagcaggcagacatctgaaccgtggtacatctagttcttctatttgtctacctataggtgcactcataacattttaatttatttcatgtgttgtcatcgttatcctctgtattactctgagaaagaagatgttacctgtttgtgaaaaagagggtcacagagtatgtgtgaaccaatacttcatttgagacagcctcacatggagaatgcaatgagccattctcttctcacatacagttgaatatgacatttactgcagtttgatcactaagcataagagccaagaactctggaacaagaagaagaagacgaaggaggaggaggagggggagggggaggaggagaaggagaaggaggagaaggagaaggagaaggagacggagaaggaggaagaggaggaggagggccgggcgcagtggctcacgcctgtaatcccagcattttgggaggccgaggcgggcggatcacgaggtcaagagaccgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcgggcgtctgtagtcccagctactcgggaggctgaggcaggagaa...
position 509
gatgtgattaaggttaagaactttgagaagggaagattatcctggattatacaggtcgacgtttatttctttctgaactttcctggaggatcatcggccatactccagcagaagggtggatttgaaaaaataacgtttccacggcaacagtggcagcaattcaaaggaagacgttggagaattcacatgctattttagctggctctgtgattgcaatcacacaaatcattacattccagcgagatcccatcaacagaaggccatttcagtctgtcaagcaggcatgaatactgtaagcaagaagagaaaagttacaataaattgacatttatagttgaa
position 711
atttgcccgaggcagccacaaatgaagaagctgggtctgctccacacctgtgaaccaggctatttccaccataacctgaactcagatgagcaccagcccatggagaatagtccagaaggctgcccatagccttaaaggacagtcagcctcacaaaatgagtgttatattctggattatcagaagagaaatgtgagatgcaggcaggttgagaaaattgctccaagtcacttcgggaatgtgtgcatggacaaggaagcaggaagatcccaaggaaaaagaagcagcatgaaaaatgacaagaagactacaacagaagtttctacgaactttgcacacacagaagagggttcttttagttttagtcaggataggaaaaggacaaaataaaagtgaacatttattgagcc
position 660
ttggaaaaacagaagcaacgcagaggagatgggagtgaaccaagaacatagtaaccaccctgaacctcctcaacaaaccccagagggacatgtccccagaggagatgcagaagcacggggaggagggtccactctgtgctccgcagtcagtcaagaacaacactgaagtgctcaccaactactgacaacaacaagctgctgggctgcgaaggccttgagtagacactgcaacatggtgctggagaatgtgaaggagatgtgtactgaggtccccaaggggggcaacggtggcaagggcaagaagaagtccaagccagccaacaaagaccacttcatctccaagctcttcctgtgcagggactcagtcatcaccaacaagtgggggccacctccccattgacagaactcactccctcatcctatgaagacctaccctttgttatggggataataaagccctgtgcctagtagtaaaaacaaaacataacaacaacaataaaactttagtcatttggtcatattagggaagtcatttattattctgtttcttcagaaataaaaaacagataacaaaaaaaaaaaaaaaaa
position 476
the phosphorylation of a subunit of NF-kappaB (P65) gggctccaagcagctgcgactagcggaaagcgcgcgccagctgcacgcagggaaacagttctcattttgtgtgctcggctgactgcacgtccagcctcgggccagctcgagacggccacattgcctggttgaagatggctgagcgtaaaacagaatgcaagtcagctggagcacgtactactggaggcagagccccatgagaaggggccaagaacccgcacccatcaaaatcaagaagaaaggctgaacccggagagaaaagggagcaactgatgttgccatgcagatcccttggttgctatgagatggtaacatcactctgccccaccattggccagtgcctcctcagctgcggtgcctcccaggctgtgtggttctcacgcgggccactgacacagagctgttactatggtgaactttacaatttcctttgattggtggatttcagaaataggccatcagcggaattcattatattcagctaacctggctcagcttctcagcttctcaggtggattggtgagtcctggccaattacgcttcagctc...
position 232
S. TITLE Kir2.2v: a possible negative regulator of the inwardly rectifying K+ channel Kir2.2 JOURNAL FEBS Lett 386 (2-3), 211-214 (1996) PUBMED 8647284 atgaccgcagccagccgggccaacccctacagcatcgtgtcatcggaggaggacgggctgcacctggtcaccatgtcgggcgccaatggcttcggcaacggcaagttgcacacgcggcgcaggtgccacaaccgcttcgtcaagaagaatggccagtgcaacattgagttcgccaacatggacgagaagtcacagcgctacctggctgacatattcaccacctgtgtggacatccgctggcggtacatgctgctcatcttctcactggccttccttgcctcctggctgctgtttggtgtcatcttctgggtcattgcggtggcacatggtgacctggagccggctgagggccgcggccgcacaccctgtgtgatgcaggtgcacggcttcatggcggccttcctcttctccatcaagacgcagaccaccatcagctacgggctgcgct...
position 141
gcaaacgagtatatgacacatctgaatttgactgtggaactctgtatctatatacacttgcaattcttatcaagtaaaaatacatcaaagatatcaacaaccacagacgtatacacccgacaagaaccgctgtatattctagtacatcatttattggaccaacaaatacatggcatctggcaaggaattgaaaagtggcttgtctatctggaatacagggaggaaggagttgaaatgagatgggaagagtcatctgtatgcagaggaggtataaagtcatgcaaatggataagatttcaagaagaaagaagaaaaaggtaggctctgagtttggagagttgaatgagcctacagagataatgaagttgttgctggagagcctccataacttctgttgagaaatcggccttaatcttattgatgatgactttcacatgatcctcagatatctgcctctagatcccagatgagcaccagttgcagcagtcaaacgtcatctatctgtatatcaagataaattatgaaaggattatataccaactgtctaaatgacaaagagaagaaaggt
position 530
attcagaagactgaagcccaggcttactgtctacctttcacggaggcctagccgtgagaggacagaagaaggcatgtggcgaatcatgacagcagacaaagacaaagagaaggaccgggactgagactgggactgagagagagagaaaagagacaaagcaagagagagtgagaattcaaggccacgccggagctgtaccttggaaggaggagccaaaaattatgctgagagtgatcacagtgaagacgaggacaatgacaacaatagtgccaccacagaggagtccacgaagaagaacaagaagaaaccaccgaagaaaacgtctcgttatgaaaggacagataccggcgagataacatcctacatcactgaagatgatgttgtctacagaccaggagactgtgtgtatatcgagagttggaggccaaacacactgtatttcatctgtagcattcaagacttcaaactggtaagcatttt
position 622
actctagagaaggttgctttctgcattctggcaactgccctctgtctacatgattagactcgttggttgcagtgctttctggagtaatgaagggatccagtgcacagggtttaacttactgggcacaatctctaagccaactctgcctgaatgggtcccctgctcttctgctcttgttgaaccatatctctgttccttgtgctcctgggaatttcttgctctggtcatgaaaaaaatggaaactctctcaaggaataacaatcagagctgtctggttgacaagggacattatggttgcaagaagaccctgaagcaaggattctacatcaaagattcaggggcaatctgagtttgcatttaagatccttctgcct
position 737
gggcttcttgcccgtggggctttaagtcattctgaggctggttccctaagtgtcagccgcaccgggtaccacctcagtgtatctgggtaggccttgatgccagtgctgactctgtttactgggagctgttaatccggagatttggaccagagaaagggtatttgaacaagagttccacggccttcatccctacccggccccagcagccttggatccaggggtggacaactcatcagaagttgcacgctgggtgtggtggcgcgtgcctgtaatcctaccgctttgggaggctgaggccaagaagacgctggagggaggctgttaggagggactctgagcttcacacctgtctgctgccatgggtgcagagccctagtcctgatggcccctggtggcacatatcgaatgcctagggcagaaaggaagtgggaatggcgaagatgtgacattcctcggtgttagatcctgcttaacaagttgaggcgtgggtagagcaggaattggttttccagcattgtgtccgtaaacctgagttagaataagatgtaacggaagccacgataaagactcggtcaaatcctgcagcctggggcttactgt...
position 529
Online-Only REFERENCE 4 (bases 1 to 177) AUTHORS Kiss AM, Jady BE, Bertrand E and Kiss T. TITLE Human box H/ACA pseudouridylation guide RNA machinery JOURNAL Mol Cell Biol 24 (13), 5797-5807 (2004) PUBMED 15199136 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttgggcaataatgctagcagagtacacacaagaagaaaagtaacagcactagattgtaaagactggggtggacctctttcttaatgtccaatgtcctttgtcttaagatttggtgcaatatct
position 83
tgcccaaggtctcaccaggcaagagaagggcggagaagggcggcttcttcatggattgtaaatccccaaagcgtgcaaacatctgcccccatctccctggaggtggcctgttctccacgccaccctcacaggctgcctggcggactctcctcacagcactgtgcttcccggggcccacttgtacaggccccatgcgagaaggacctcgggcagtgtataatcctccaagggcccacaggaacagcagtgacaactgtgttatgaagcacctactatgtgctggggacaagaatggaacaagaagacatgctttgccctcacccctggagggcagcttccagccagggaggcaaatacctcctccccagactccttccacagatccccaaactctgcctctctccttcagatccctgctcagatgtcaccagctctgtgcagcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgctttctttgtctgtctcatccatgaggatgtgccctctgggaagggcaggcaggagctggctattctgttccttgccctgtccccagcaccgaggacag...
position 480
Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood MA. TITLE A reference map of the human binary protein interactome JOURNAL Nature 580 (7803), 402-408 (2020) PUBMED 32296183 agggatctattttggagacaacaaacttgactaaggaatctcaagaagaaaatataattctgctgccaggccccaatggagcaaatagagctcgggacccaggggcctttggaaggaacaggaatgcggttagaggagtgcaggaaggggctcttgggatgtgccacccaggaagacagagggccagtgctgctacctgcagccacacgactccacgaccatgtcctcatactgcttatacaccacgttgttggcagagtcaatgaagaggatgctgatgggactcagccgcgtgggcacacagcaggtgggtggtgtggactcggggtccatggagttcatcagg...
position 42
replace="c" /replace="t" /db_xref="dbSNP:925701795" ORIGIN // gagctgccggagcgtgcgcactgggccagcgggcggccggggcagggctggggtcccggcgctgagcgcccccagccgcgccgggcagcctggcgcctcgctgagtcggagcaacccccggcaggagctttcaggctctggtcaagcctcgggacccgggaagctatccctgccctcgggggctcgagcctggagtggggcttgcagaaaaggaaagggggctggcctaaaggcaagaagagaaaccccccgagggaccttgctgttccgtgttcctacgacagggtacatgatattcctgaatgagcagagaagtcagctgagggccacacaccccgatctgcctttcacagaaatcatgaagatgctggctgttcagtgggcccagctgtctcaggataaaaagggggagatgaactcaatgacctctactgcgggacctccaggcagctcttcagctccctgtgcaacaagaaggaacctgctgcaaaggcagcacctgcagcgcctctcaggtaaccagcctgggccaggcggc...
position 234
cctagccttagctaggctaagagcctagcttctggcctggcttttacgtggtcagcggatgtgcgtccatccccctgcactggttccccttgtcctttctgtggctctcctggattcctctcgttcagctccttggtgtacagagcctatgtcaatggcaatggtgagggaaattgccagagccctgccctccaggcctgtccttattcatggggatctgagaagaagagattaggacccagacatgcacagaggagaccctgtaaggacacaaagagaagacagccatctgcaagccaagaagaaaggccttgggggaaaccagccctgcccacaccttggtctggacttccagctgattcttggatgagctggtccttaggcacggaggcaggactgtgagaaaataaatttctgaattca
position 828
acctcagagcgggctaaggctgggttcggtcatcagccagagtgccatttgcgagctgttccttgatggcaattacttggaatgttccggagcactggctcttctcaggcccatagcaggctttgcggagacacagggggaagaccagccagccccaggctcaccagacactggaaatccccctcagcggctccaagccaaacagagaggaagttcaactatgaaccagattacaaaatcgtctgaagctgtaacagtgaaaactacttcagggaagaaaaagagaaaaaaaggaatcaagaagaaaattgaaggtctgatggaaagtggtccttggttagtgaagttgcattaggcagataatggcatagatggaaaaggaagagaaggagaaaatggtttattggaattcattcaaactttaacatgcctgatcaaatactctgcctacttaagggaaattgaccttggaaacaatgttctgggagaaatggctgctgctaacatacttg
position 763
LOC100507464" /replace="a" /replace="g" /db_xref="dbSNP:1309090139" variation 266 /gene="LOC100507464" /replace="g" /replace="t" /db_xref="dbSNP:1806350489" variation 267 /gene="LOC100507464" /replace="a" /replace="g" /db_xref="dbSNP:1806350471" ORIGIN // gagatcaaggaagaggaacacgataaaatgcttatggctccaagaagaaatagggtgagagataggaccacaaattgtttactcatttcaaccagtaaacatgtcctgcaatgtcaatctgtctttctgccacagcagttctgcgcctcctgagttgtttccatctccctccagtcattcaggaccaccaatgagatttgtgatatttggaaaactgccacccagtgcctccttttcctaatctgctgaataaagttaataagactaaaaa
position 41
gagctccatgcaaaacttaaacacttgcaggatgacaataatctgttaaaacagcaacttaaagatttccagaatcaccttaaccatgtggttgatggtttggttcgtccagaagaagtggcagctcgtgtggatgagctaagaagaaaactgaaattaggaactggggaaatgaacatccatagtccttcagatgtcttagggaaaagtcttgctgatttacagaaacaattcagtgaaattcttgcacgctccaagtgggaaagagatgaagcacaagttagagagagaaaactccaagaagaaatggctctgcagcaagagaaactggcaactggacaagaagagttcaggcaggcctgtgagagagccctggaagcaagaatgaattttgataagaggcaacatgaagcaagaatccagcaaatggagaatgaaattcactatttgcaagaaaatctaaaaagtatggaggaaatccaaggccttacagatctccaacttcaggaagctgatgaagagaaggagagaattctggcccaactccgagagttagagaaaaagaagaaacttgaagatgccaaatctcaggagcaaggg...
position 1137
variation 274 /gene="LOC102725254" /replace="a" /replace="t" /db_xref="dbSNP:1223163393" variation 276 /gene="LOC102725254" /replace="c" /replace="t" /db_xref="dbSNP:946833043" ORIGIN // ggtcaagagagcctcccctccccaccattcccagaaaaggaggaaggggctgatggactctctgggaaccccctcccctccctgcgccccgtcatcaagaagaaaattcgaagaaaaggtttagcagggacagagaagcgacctgtcccggaaaccccttaaagcctgcgggtaacatgtttgctccctcctcccccactcggactatagaagtatcaccaatccactgcagagaaattgggaaaattcagaaaaacaaaaaataaaaagaaatccac
position 96
gaaaagaaggctcaaacgtcactggaatctcaattcacagatcgatacccagataatctgaaacatctctatttagctgaagaggaaagacataggaagcaagcaagaaaagtcgaccatcctttgtcagaacaagttcaccagccgttgcttgaagaacagtgtagcattgacgagcctttatttgaagatcagtgtagctttgaccagcctcagccagaagaacaatgtattaaaacagtaaactcctttacaattccaaagaaaaataaaaagaaaacatcaaatcaaaaagcacaagaagaatatgaacagatacaagccaaacgtgctgctaagaaacaagaattcgagaggagaaaacaggagagagaagaagcccaaaggcagtacaaaaagaagaaaatggaagtgtttaaaatactgaacaaaaagactaaaaagggccaaccaaacttgaatgtacaaatggagtaccttcttcaaaaaatacaagaaaaatgttaaacattttgttcctacaggttaaaatatctgctgcctattaggttcttctgtgacatgtgcctcccagcagtgaactaaatttgtcgacataaa...
position 490
attttaataacaaatgagaatatgatgtgacatccgttccaaatcctgtcgttccaagtaacttcttaagcatctttcacgatacagcctctgcttgaaaggaattaaaacaggtacaagcatggaaggagacgttgctatcatatttcaagaataagaaaatgctgttttgtgtggttgtgcagcaggcaatgaaatgagcttacattcaagcttccgtgttttactgaaacaacagtcacagatgcagtagatgttaaaggttgaaagacgagtgcagtaaaagcattatgaggacaagaagaaaacgtaaatatttgtgttgtttcattctttgttgtggtggcagaaacagccccctctttctaaggtaactccaatataatgatctctcccagctttgaaatactccatgtctgtttcattttccagaaatatggaaaaatgaatatataataaaaaaccctatttctcatttaaaaaaaaaaaa
position 815
tgccccgccgccccgcctgggatgtgaggagcgcctctacccggccgcgaccccgtctgggaggtgaggagcgtctctgcccggccgccccgtctgagaagtgaggagaccctccgcctcgcagccgccccgtctgaaaaggtggctgtcaatagattggcccaaaaggaagaacaaggaaaagggcaccaaagaagataaatgaaaatacaagggtataagctgaactgtggacatcctgccactgggaattaagttaaagtagaaaaaagcagaatgtaatggggagtcccctcacaagaagaatttggatcaaagcatggcagtgaggggaagcattgagcagtgccgatttcaaatgaagactgacttgatcctgaacataacctacaagaagaaagggaccacaggctatacacaaagcatggtgccggcatctgcttctggtgagggcctcaggaagcttacaatcatcttggaaggtgaagaggaagccagcgcatcacatggcaagagagggagcaagagagaaggggacagtgccgcacactttaaaaaaaaaccttatctcacgaggcagaactaactgagtgagagttc...
position 341
Only aggtaaatattcctcacgccagcaggtgaggaggctggggccagatgacagctagtgagggagcagagacaagacaaggcgagcctgtgacagagcgagaccctgtctcaaaaaacaaaaacaagacatgtgagcttggactccagtgtggaatcccatgtccgctcagtgcacctttctgccgctgaaagtacaagaggagaggggaaacccacaggtggagctgaccatgaggactgtcacagctttgagaggcaaatccagaaatcagccctccagcttcctctaccaagaagactggcggttacaaccctggctctgtggggcttctcttgccctctcttctgactgccctacttggctccaggtgagggtgagaggaagctggagatggaagatgcagctgggggaactcaccaggcaggtctcagggaactctttgaataagaggacaccagatcatgcctgcagttccagcccaggagcaactagcaccagcctcagcatggagcaggacttcagttccagcagcgaggactgagatcagacacaagagaaagctccctgatgaggaggggtgattctaaaacgaagg...
position 290
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0.000 | 0.000 | search_start;
1.151 | 1.151 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaag)?source=Homo sapiens (human)?to=0&format=json
2.281 | 1.130 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaag)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
2.287 | 0.005 | cgi_end;
GGRNA ver.2 by
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DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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