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Previous release (v1)
2024-04-26 07:45:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_947942 366 bp RNA linear PRI 05-OCT-2023
DEFINITION PREDICTED: Homo sapiens uncharacterized LOC105369453
(LOC105369453), ncRNA.
ACCESSION XR_947942
VERSION XR_947942.2
DBLINK BioProject: PRJNA168
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_000011.10) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Jun 6, 2016 this sequence version replaced XR_947942.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_000001405.40-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/02/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..366
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="11"
gene 1..366
/gene="LOC105369453"
/note="uncharacterized LOC105369453; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 100%
coverage of the annotated genomic feature by RNAseq
alignments, including 1 sample with support for all
annotated introns"
/db_xref="GeneID:105369453"
ncRNA 1..366
/ncRNA_class="lncRNA"
/gene="LOC105369453"
/product="uncharacterized LOC105369453"
/db_xref="GeneID:105369453"
variation 2
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:528755868"
variation 16
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:2135368765"
variation 22..28
/gene="LOC105369453"
/replace="aca"
/replace="acaaaca"
/db_xref="dbSNP:760668772"
variation 28..31
/gene="LOC105369453"
/replace="ag"
/replace="agag"
/db_xref="dbSNP:1857853610"
variation 32
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:2135368769"
variation 34
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:931384727"
variation 37
/gene="LOC105369453"
/replace=""
/replace="a"
/db_xref="dbSNP:1857853657"
variation 38
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1857853683"
variation 39
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857853706"
variation 45
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:1857853721"
variation 48
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1223138581"
variation 51
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:1857853750"
variation 53
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1343712534"
variation 56
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1270790802"
variation 61
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1053307798"
variation 66
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857853904"
variation 71
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:892007412"
variation 74
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1011829085"
variation 76
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1048505474"
variation 77
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:889770027"
variation 86
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:556175858"
variation 98..101
/gene="LOC105369453"
/replace="tggt"
/replace="tggtggt"
/db_xref="dbSNP:1857867695"
variation 99
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1285706854"
variation 102
/gene="LOC105369453"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1591165266"
variation 103
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:574604342"
variation 108
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1487540222"
variation 109
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:899816331"
variation 110
/gene="LOC105369453"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1202185124"
variation 111
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1341924195"
variation 112
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:781615170"
variation 113
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:746390139"
variation 117
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857867947"
variation 119
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:998081966"
variation 120
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857867983"
variation 121
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:568091753"
variation 122
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1029510430"
variation 128
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:537093959"
variation 132
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:1857868083"
variation 133
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857868102"
variation 134
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857868805"
variation 135
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:541911191"
variation 137
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1022547376"
variation 140
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857868884"
variation 142
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1316728454"
variation 143
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1811776447"
variation 146
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:1857868915"
variation 148
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857868936"
variation 152
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1275810476"
variation 154
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1051168879"
variation 155
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:770099877"
variation 157
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1346023452"
variation 160
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1322836202"
variation 166
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857869057"
variation 168
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857869079"
variation 170
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:1384798844"
variation 172
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1857869117"
variation 178
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:2135369379"
variation 181
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:903403650"
variation 183
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1168699701"
variation 184
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1158293037"
variation 185
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:967858872"
variation 187
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857869239"
variation 189
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:998943614"
variation 190
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:2135369389"
variation 191
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:980916789"
variation 193
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1033541774"
variation 195
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857869324"
variation 198
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857869355"
variation 199
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857869376"
variation 200
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1591165297"
variation 201
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1591165299"
variation 204..214
/gene="LOC105369453"
/replace=""
/replace="tgttttaccag"
/db_xref="dbSNP:1857869499"
variation 204
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1480818738"
variation 209
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:957493548"
variation 211
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1358371775"
variation 212
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857869608"
variation 216
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1857869640"
variation 219
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:561537493"
variation 223
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:764042512"
variation 229
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1472945594"
variation 231..232
/gene="LOC105369453"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1857871598"
variation 231
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857871575"
variation 232
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857871624"
variation 233
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857871645"
variation 234
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1051324562"
variation 236
/gene="LOC105369453"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1184722087"
variation 237
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857871716"
variation 239
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857871740"
variation 241
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:991786491"
variation 242
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:189961692"
variation 247
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:903349873"
variation 249
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1286570753"
variation 255
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1215886887"
variation 256
/gene="LOC105369453"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:552334470"
variation 257..259
/gene="LOC105369453"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:1857871881"
variation 260
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:918925534"
variation 265..266
/gene="LOC105369453"
/replace="g"
/replace="gg"
/db_xref="dbSNP:1293730206"
variation 265
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1591165363"
variation 271
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:951642248"
variation 275
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:1857871987"
variation 278
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:983424090"
variation 282
/gene="LOC105369453"
/replace="c"
/replace="g"
/db_xref="dbSNP:1857872072"
variation 290
/gene="LOC105369453"
/replace="a"
/replace="t"
/db_xref="dbSNP:1857909363"
variation 297
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857909395"
variation 299
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:2135370803"
variation 300
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1468145430"
variation 305
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:2135370808"
variation 306..325
/gene="LOC105369453"
/replace="cctttgaaaacttcaccttt"
/replace="cctttgaaaacttcacctttgaaaacttcaccttt"
/db_xref="dbSNP:1857909433"
variation 307
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1392964153"
variation 316
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1207306144"
variation 321
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:1043928820"
variation 322
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:759519896"
variation 325
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:1857909628"
variation 332
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1565280887"
variation 334
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:142130950"
variation 336..337
/gene="LOC105369453"
/replace="ga"
/replace="gaga"
/db_xref="dbSNP:1368960170"
variation 336
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1857909714"
variation 340
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:1449315698"
variation 343
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1309649171"
variation 344
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:1234361570"
variation 346
/gene="LOC105369453"
/replace="g"
/replace="t"
/db_xref="dbSNP:534693653"
variation 352
/gene="LOC105369453"
/replace="c"
/replace="t"
/db_xref="dbSNP:938078521"
variation 358
/gene="LOC105369453"
/replace="a"
/replace="c"
/db_xref="dbSNP:1055127066"
variation 359..360
/gene="LOC105369453"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1857909886"
variation 360
/gene="LOC105369453"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:192799983"
variation 366
/gene="LOC105369453"
/replace="a"
/replace="g"
/db_xref="dbSNP:966128864"
ORIGIN
cttggatttgggccaatttggacaaacagagttgggatagtaaacattccaagaagagaacaggataaacagaactgcagtaaggccccaagaagattggttggtgcccacccatatggagggcagatcttccaccctcagttcactaagattcacatgcaaatcacctctggaatcatcctcacagacatactaaaaaataatgttttaccagatttccagcctattcaccatgaagatgatgaagatgaaaatatttatgatggctctacttccacttagtgaatgatttagatcaaattctgcctttgaaaacttcacctttttatctacatgaaagatggggacagatgtttccaatgctta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]