GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-29 11:09:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_007083756            4504 bp    RNA     linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens uncharacterized LOC112268113
            (LOC112268113), ncRNA.
ACCESSION   XR_007083756
VERSION     XR_007083756.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060937) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="13"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..4504
                     /gene="LOC112268113"
                     /note="uncharacterized LOC112268113; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     long SRA reads, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:112268113"
     ncRNA           1..4504
                     /ncRNA_class="lncRNA"
                     /gene="LOC112268113"
                     /product="uncharacterized LOC112268113"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:112268113"
ORIGIN      
tcctccaaagagattatacactttttttaactagaaaaaagttatttgttaaagagatcataaatgacataatattttacagaagttaagagctgagattgtgagaatttccagggactcctgccatcagcccacctcgcatcattgtttacatggaaatgttgggactgaggtgacctcatgcctctcaattcccagccagccttctctccctctggctcttagctagcctgttaaacagaaaataatcagtgagacgaataaactacaccctagtgttctaacaagttacacataattgcttgcttaccaattgtctacctcagaactttcttttcctcatagagtcaacataatcatctattttaaattcggcttttgccattttacagtccaagatgctggactttgcatagggcatggatgggtttccacagtccacacgaggatgggaggagaacagggcagatccagccccactcagtgagagttctggctggagttagttggctggacttcactccagagagagaccttcctctgtaccagctaccaagacagcccctagttggaaaatcttttcttctaaggtgagatgcagcccccactggagagaaaaacaccagagagttttaaaaaggaaaaaccaaggattggagaccttcaaattaactgacaatagatacattagtagaagagacaatacttggcttcttgttccacaagtatcattgcgggacaaaattcagcagatggcaggatccagtttacaaagagatggcatcgaaagtgaagaaggaagctcctgcccgtcctaaagctgaagccaaagcgaaggttttgaaggtcaagaaggcagtgttgaaaggtgtccataaccacatgcaaaaagaagatccgcatgtcacccaccttcaggcggcccaagacactgcgactccagaggcagcccagatatcctcagaagagcacccccaggagaaacaagcttggccactatgctatcatcaagtttccgctgaccgctgagtcggccgtgaagaagacagaagaaaacaacacgcttgtgttcactgtggatgttaaagccaagaagcaccagatcagacaggctgtgaagaagctctatgacagtgatgtggccaaggtcaccaccctgatttgtcctgataaagagaagaaggcatatgttcgactggctcctgattatgatgctttggatgttgcaacaaaattgggatcatctaaactgagtccagctggctaactctaaatatatgtgtatcttttcaccataaaaaaatgatgtttttcataagaatgacaaattaattagaaccaaatctataagctttaagattttacgtttttagtaagtataatattagcttatttgactagaactcaagcagaataggaatttatgtttgttttatattcaatagtgataattttgaagacagttgttttattacaccaaaaatattatattaatcttatttaactaagttttatccaaatcgtgttaacttaaaaaacatttgatcagttcctatatttctaggagtttggtgaatatttacttataaatgcttatttttttccaagccaagttagaatagagcacttttagaggatttcataaatgaattttgcaatgctatccggagttaagaaaatatcacatatatgttacatacattaatagatatacaaacacaaatagagatttcatagctttcatcctgaaatttcagccatgaatcaggcataaatattctgatggttaattttagacatctacttgactggactaagagacacacatagctggtcaaacacaatttcagccatgaatcaggcataaatattctgatggttaagtttagacatctacttgattggattaagagacacacatagctggtcaaacacaatttctgggcatatctgtgagggtgtttctggaagacactgagataaccatgacccagtgtagatgggaactgatatggtttgcctgtttccccacccagatctcatcttgaattgtagttcctataatccctaaatgtcgtgggagggacccggtgggaggtgattgaatcatggtggtggttactgccatgctgttctcatgacagtgagtgagttctcacgatctcatggttttataaggggcttttcccctttggctcagcacttctccttgttgctgccttgtgaagagggatagatttgcttccccttctgccatgattgtgaggcccctgcagccatgtggaactgtcagcccattaaacctctttgttctttataaattgctcagactcaggtatttcttcatagctgtataaaaatggatgaatacaggcaccatccaattggttgagagcccagatagaacaaaaaggaagaggaaaggtgaattatctccttctgaaacggaaacatccttcttctcctgcccttgacatcagaacttcggggtctcagacctttggcctcacaatcagagttacaccattggcttccctgattctgagtcctttatatctggagtgagccatgctgccagctttcctggttctcgaacttggagacaggctattgtgtaacttctcagcctccataattatgtgaaccaattcccctaatgagtcttctctcatctatctatctacatatatcctattgattctgcctttctggagaaccctgactaatgttattacaataatactaaattcactagtttatgtagaagacttggtttttgtctttgcccaattttatatttgtattataactgtgtatctggaaaatggaacaagtttttatcttcttcatatgagcgccaaagcttttgtctcaccaatatttttggagatttttaagattttcttttgtttggacatacaatcttatggaggatgagaaatatttttttttctattttatttttcagccccaggtgtttgcttttgcagattcttgagcacattgagagcatggagagcactccaaggcatggagtggggtgcctaaagtttcagtgattacagggagttgagatactcaactgggaaaggaaaagtctaaaaggaggcaatttggaagataaaaattttctcaaaagagcgattaaatttctaaataattcttagtaaaatcatgcaaacaggaaaggaagtagaattagttccatattgttggaacacatagtcagcagaggtttgagaagggagaatttagtcaactgagaagttcccatgaaaggagcaagttcaagatcacagagacaccttgaaacaaaaagccaggaataacttccgacccaagaagagaacagagaggcctcaaaaccaaagctaggataagaaacttgtagcccaagagttatcttccagacaaagaagcctgagattccaacgcagcttcagagagtgctcactcaaaatgttactgaaactgtaggctttttaatgacttagccatgcctgcaaaaggcattccctaaggtggcacagaagacggagcccccatatccaaagatagccaaggagaaagaaagacccctgttgccagagccagtgggcaaaggcaacagaaaaggagacaagggtcctaatgggatgagatcctttcggatttaggcttttacaaactcctgagaactggcaggttgacagccataaatggggtaccaaactttctactcattggattacaagttctcaggcatccagaatgatgaacaaaatgacaatttctagggcttctgtgggagagtatggaaagatctttttgaaccttttaatgctatcagtggaagaacgatgaggttcataaatttggaaaggagacatttcttcatttttatgtttatttttatttttattttttgagacagagtttcactcttgttgcccaggctggagtgcaatggtgtgatcttggttcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgattagctgggattacagatacccaccaccacacctggataatttttttttgtatttttagtagagacagggtgtcatcatgttggccaggctggtctgaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggtttacaggcatgagccaccacacccaatgagagatttatttcttataaagggttgcagcctgaagggttgtccttctgacaggctgggaagcacagcctccagccagaagccagaaacagatgcttcaaggaggaggtaaaggaaatagtaatttatgctgattggaatggccaaatgcatttatttaataagctctaggaggagtcatgaatatttatggaaggagaaatgcatgcatgtgcaattgagtttcttgcttcttcatgggtcccatgtacaaaaaatggcagtgttatcatgatcccagggtggagttttcagctatctgacattaaaagg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]