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Previous release (v1)
2024-05-06 06:12:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_007060780 481 bp RNA linear PRI 05-OCT-2023
DEFINITION PREDICTED: Homo sapiens ATP synthase-coupling factor 6,
mitochondrial-like (LOC101928296), misc_RNA.
ACCESSION XR_007060780
VERSION XR_007060780.1
DBLINK BioProject: PRJNA168
KEYWORDS RefSeq; includes ab initio.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_000008.11) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_000001405.40-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/02/2023
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 13% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..481
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="8"
gene 1..481
/gene="LOC101928296"
/note="ATP synthase-coupling factor 6, mitochondrial-like;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 1 mRNA, 4 Proteins, and 32% coverage of the
annotated genomic feature by RNAseq alignments"
/pseudo
/db_xref="GeneID:101928296"
misc_RNA 1..481
/gene="LOC101928296"
/product="ATP synthase-coupling factor 6,
mitochondrial-like"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
/pseudo
/db_xref="GeneID:101928296"
variation 1
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1587082297"
variation 3
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:2130479528"
variation 4
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:373070531"
variation 6
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1447120339"
variation 8
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1818965869"
variation 13
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1355059705"
variation 16
/gene="LOC101928296"
/replace="g"
/replace="t"
/db_xref="dbSNP:926294989"
variation 17
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1818966558"
variation 20
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1330589901"
variation 27
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1818967043"
variation 37
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:937625373"
variation 39
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1818967493"
variation 43
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1587082453"
variation 46
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1407968990"
variation 47
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1818968216"
variation 48
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1818968458"
variation 54
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1327485806"
variation 60
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:996540166"
variation 61
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1319409294"
variation 63
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1033020528"
variation 67
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1056924307"
variation 74
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:957391497"
variation 76
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1587100353"
variation 77
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1420367806"
variation 80
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:988724312"
variation 85
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1587100410"
variation 90..93
/gene="LOC101928296"
/replace="ct"
/replace="ctct"
/db_xref="dbSNP:1819413792"
variation 93
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819414013"
variation 95..97
/gene="LOC101928296"
/replace="t"
/replace="tct"
/db_xref="dbSNP:1178635035"
variation 97
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1587100444"
variation 100
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819414658"
variation 101
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1020236384"
variation 103
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1255335545"
variation 106
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1208253153"
variation 107
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1488253984"
variation 109
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:971206310"
variation 114
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1587100560"
variation 116
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1217975104"
variation 117
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1587100594"
variation 121
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1351609480"
variation 124
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:774212053"
variation 125
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:771018672"
variation 126
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819417403"
variation 129
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:563085061"
variation 132
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1239412452"
variation 133
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1371435038"
variation 134
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1305405938"
variation 135
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:531974407"
variation 137
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:111875881"
variation 139
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819419905"
variation 144
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1369537528"
variation 147
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1587100802"
variation 149
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819420830"
variation 152
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:571939612"
variation 153
/gene="LOC101928296"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:79656802"
variation 158
/gene="LOC101928296"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:929686036"
variation 167
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819422096"
variation 168
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819422325"
variation 173
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:2130535069"
variation 178
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:143946380"
variation 184..187
/gene="LOC101928296"
/replace="ct"
/replace="ctct"
/db_xref="dbSNP:1487342939"
variation 185..189
/gene="LOC101928296"
/replace="t"
/replace="tcttt"
/db_xref="dbSNP:1819423217"
variation 187
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:890332097"
variation 189
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1009139086"
variation 190
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1315937646"
variation 191
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:944850763"
variation 193
/gene="LOC101928296"
/replace="g"
/replace="t"
/db_xref="dbSNP:1348453117"
variation 196
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:182026723"
variation 198
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1563829153"
variation 203
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:962418832"
variation 210
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:185272289"
variation 214
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:994898592"
variation 220
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1027671435"
variation 223
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:2130535640"
variation 225
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:969344412"
variation 227
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1819426533"
variation 228
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1819426746"
variation 229
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:996266451"
variation 236
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819427228"
variation 237
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1819427467"
variation 240
/gene="LOC101928296"
/replace=""
/replace="t"
/db_xref="dbSNP:1033550079"
variation 242
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819427941"
variation 244
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1819428173"
variation 257
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819428424"
variation 258
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1267598416"
variation 259
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1587101220"
variation 262
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1171345545"
variation 263
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1465854343"
variation 268
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1489963030"
variation 270
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:754641695"
variation 272..295
/gene="LOC101928296"
/replace="ca"
/replace="cagagaagaagctttttaagctca"
/db_xref="dbSNP:1819430089"
variation 273..280
/gene="LOC101928296"
/replace="agagaaga"
/replace="agagaagagaaga"
/db_xref="dbSNP:1010271034"
variation 277
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:2130536366"
variation 279
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:555897462"
variation 280
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1262782342"
variation 284..288
/gene="LOC101928296"
/replace="tttt"
/replace="ttttt"
/db_xref="dbSNP:1819430957"
variation 286
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819431165"
variation 287
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1563829235"
variation 297..303
/gene="LOC101928296"
/replace="g"
/replace="gcaagtg"
/db_xref="dbSNP:1819431846"
variation 297
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1188687687"
variation 300
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1819432097"
variation 301
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:981023704"
variation 304
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819432577"
variation 306..307
/gene="LOC101928296"
/replace=""
/replace="tacc"
/db_xref="dbSNP:1020185720"
variation 306
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819432802"
variation 309
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819433265"
variation 319
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819433479"
variation 324
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819433682"
variation 326..327
/gene="LOC101928296"
/replace=""
/replace="gtat"
/db_xref="dbSNP:1819434036"
variation 330
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:2130536939"
variation 333
/gene="LOC101928296"
/replace="g"
/replace="t"
/db_xref="dbSNP:1749926102"
variation 336
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819434265"
variation 339
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819434483"
variation 344
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1258175718"
variation 350
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1198717390"
variation 353
/gene="LOC101928296"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:928201754"
variation 355..357
/gene="LOC101928296"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1251711009"
variation 359..360
/gene="LOC101928296"
/replace="t"
/replace="tt"
/db_xref="dbSNP:1220267857"
variation 361
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1315625673"
variation 368
/gene="LOC101928296"
/replace="a"
/replace="t"
/db_xref="dbSNP:1414799338"
variation 369
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1332758770"
variation 370..375
/gene="LOC101928296"
/replace="aaaaaa"
/replace="aaaaaaa"
/db_xref="dbSNP:981643920"
variation 370
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1396011528"
variation 376
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:1819437173"
variation 382
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1034196985"
variation 383..384
/gene="LOC101928296"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1819437611"
variation 386
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1169966950"
variation 407
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1819438077"
variation 411
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:958823666"
variation 415
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1464413027"
variation 417
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1407414605"
variation 419
/gene="LOC101928296"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819439038"
variation 431
/gene="LOC101928296"
/replace=""
/replace="t"
/db_xref="dbSNP:1166010150"
variation 432
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1406157922"
variation 434
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:973849017"
variation 435
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819440069"
variation 437
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:919703600"
variation 440
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819440540"
variation 447
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:960941414"
variation 448
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1302420283"
variation 454
/gene="LOC101928296"
/replace="c"
/replace="g"
/db_xref="dbSNP:189864724"
variation 463
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:929613990"
variation 464
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:988703616"
variation 465
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1819441999"
variation 474
/gene="LOC101928296"
/replace="a"
/replace="c"
/db_xref="dbSNP:1563829375"
variation 475
/gene="LOC101928296"
/replace="c"
/replace="t"
/db_xref="dbSNP:1200229094"
variation 476
/gene="LOC101928296"
/replace="a"
/replace="g"
/db_xref="dbSNP:1819442722"
ORIGIN
atgttgagagaagcctggaaacctggatgggacagcaagagtaaaggccaaagaatcagccagattctccagaggctcttcaggttctcctctgtctttcagtcagcagtctcagtccatttgcggaggaacattggtgttacagcagtggcgtttaataaggaacttgatcctgtacagaaactctttatgtacaaggttagagaatacaaatctaagtgacagacatctggaggatctgttgatactgatccagagtaccagcaagagccagagaagaagctttttaagctcaagcaagtgtatggtaaagcagacatgaatacattccctaacttcaaatttgaagatcccaaacttgaagtcatcaaaaaaccccaggcctgaagaaataaagtaaaattaacctggtaagttgtcaagggttagctgtacaactagctagaagtttcagaataaacatacattcacaactgtcaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]