2024-03-29 08:31:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_001749918 355 bp RNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens uncharacterized LOC107984620 (LOC107984620), transcript variant X2, ncRNA. ACCESSION XR_001749918 VERSION XR_001749918.1 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000013.11) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001405.40-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..355 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="13" gene 1..355 /gene="LOC107984620" /note="uncharacterized LOC107984620; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:107984620" ncRNA 1..355 /ncRNA_class="lncRNA" /gene="LOC107984620" /product="uncharacterized LOC107984620, transcript variant X2" /db_xref="GeneID:107984620" variation 8 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1403589165" variation 15 /gene="LOC107984620" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1247080532" variation 17 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:376549944" variation 23 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886786880" variation 25 /gene="LOC107984620" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:576545221" variation 31 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:945101284" variation 40 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886786705" variation 43..47 /gene="LOC107984620" /replace="gggg" /replace="ggggg" /db_xref="dbSNP:1886786517" variation 43 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:1886786658" variation 45 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:746144021" variation 49 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:1325354169" variation 50 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886786418" variation 51 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886786372" variation 57 /gene="LOC107984620" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:920811932" variation 60 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886786263" variation 61 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:555242707" variation 65 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1886786149" variation 66 /gene="LOC107984620" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1281106820" variation 75 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886786030" variation 77 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886785985" variation 79 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:1324865813" variation 81 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:934151177" variation 84 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:779125686" variation 85 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:976049845" variation 86 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:962770950" variation 89 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886785664" variation 93 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1566259715" variation 95 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1209609625" variation 103 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1240337098" variation 106 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1337616138" variation 117 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1188421389" variation 118 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:193193149" variation 120 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:908380768" variation 122 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:2137624170" variation 128 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1566258328" variation 130 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1886726590" variation 131 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:573900803" variation 132 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1172372262" variation 133..134 /gene="LOC107984620" /replace="" /replace="ag" /db_xref="dbSNP:1886726415" variation 133 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1419688536" variation 134 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:555477924" variation 136 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1327477664" variation 139 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1390875521" variation 142 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:971254711" variation 144 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886726173" variation 148 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:540361706" variation 156 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886726085" variation 157 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1023328750" variation 158 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886725957" variation 160 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:991355170" variation 163 /gene="LOC107984620" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:149879782" variation 166 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886725680" variation 168 /gene="LOC107984620" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:913159745" variation 169 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:187909151" variation 173 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:959867580" variation 178 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:927040305" variation 182 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:539422050" variation 189 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1159081922" variation 191 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1313893133" variation 194..200 /gene="LOC107984620" /replace="aca" /replace="acaaaca" /db_xref="dbSNP:1032599019" variation 201 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1256621967" variation 203 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886725078" variation 207 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:770021326" variation 208 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:569409896" variation 210 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:1285714616" variation 212 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:370044484" variation 213 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:897805661" variation 215 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:1702095623" variation 219 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:758587365" variation 223 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1036338227" variation 226 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:967679289" variation 231 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1475544668" variation 232 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886164579" variation 237 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1318275701" variation 241 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1216898120" variation 243 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1008873625" variation 244 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886164419" variation 250 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:565771403" variation 252 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886164319" variation 254 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:1050977850" variation 258 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:1886164239" variation 259 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1886164196" variation 264 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886164153" variation 267 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886164090" variation 275 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:750845523" variation 277 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886163955" variation 279 /gene="LOC107984620" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:932479552" variation 280 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:9600411" variation 284 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1470458680" variation 289 /gene="LOC107984620" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:921146980" variation 292 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1477676824" variation 294 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1050171150" variation 295 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886163591" variation 298 /gene="LOC107984620" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1043848640" variation 303 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1442028141" variation 304 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1360177163" variation 306 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886163454" variation 307 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1886163409" variation 312 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1251037246" variation 314 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886162877" variation 315 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1886162843" variation 318 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:1398518454" variation 319 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1197322103" variation 320 /gene="LOC107984620" /replace="a" /replace="c" /db_xref="dbSNP:1886162753" variation 321 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:1886162721" variation 324 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1325970516" variation 325 /gene="LOC107984620" /replace="c" /replace="t" /db_xref="dbSNP:946516618" variation 326 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:547593665" variation 330 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:1886162573" variation 331 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1272512924" variation 335 /gene="LOC107984620" /replace="c" /replace="g" /db_xref="dbSNP:987766074" variation 347 /gene="LOC107984620" /replace="a" /replace="t" /db_xref="dbSNP:2137599886" variation 351 /gene="LOC107984620" /replace="a" /replace="g" /db_xref="dbSNP:960368042" variation 354 /gene="LOC107984620" /replace="g" /replace="t" /db_xref="dbSNP:1593749106" ORIGIN
gcaagaaggcaaccatgagcaagccaagaagagagccctcaagggggaaccaaaaggctggctggtaccttgatcttggggtttccagcctccagaatgaatcctctggaaacactatggagtgatggagaaagcaccatctggggagtcagatgacctgctctctatcccagctcatcagggagtctctgagacaaacacttaccagagccactcttgatgatagaattggtgatgtgacagccaccaaaggaatgtgacacaaagtagaaatgagacctgagatgtggcctggacctttaccatggaaatgcccataaattgcgtccctattccttaagattttatttaaagt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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