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Previous release (v1)
2024-04-27 04:22:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_001749917 404 bp RNA linear PRI 05-OCT-2023
DEFINITION PREDICTED: Homo sapiens uncharacterized LOC107984620
(LOC107984620), transcript variant X1, ncRNA.
ACCESSION XR_001749917
VERSION XR_001749917.1
DBLINK BioProject: PRJNA168
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_000013.11) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_000001405.40-RS_2023_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/02/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..404
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="13"
gene 1..404
/gene="LOC107984620"
/note="uncharacterized LOC107984620; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 100%
coverage of the annotated genomic feature by RNAseq
alignments"
/db_xref="GeneID:107984620"
ncRNA 1..404
/ncRNA_class="lncRNA"
/gene="LOC107984620"
/product="uncharacterized LOC107984620, transcript variant
X1"
/db_xref="GeneID:107984620"
variation 8
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1403589165"
variation 15
/gene="LOC107984620"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1247080532"
variation 17
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:376549944"
variation 23
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886786880"
variation 25
/gene="LOC107984620"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:576545221"
variation 31
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:945101284"
variation 40
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886786705"
variation 43..47
/gene="LOC107984620"
/replace="gggg"
/replace="ggggg"
/db_xref="dbSNP:1886786517"
variation 43
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:1886786658"
variation 45
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:746144021"
variation 49
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:1325354169"
variation 50
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886786418"
variation 51
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886786372"
variation 57
/gene="LOC107984620"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:920811932"
variation 60
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886786263"
variation 61
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:555242707"
variation 65
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1886786149"
variation 66
/gene="LOC107984620"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1281106820"
variation 75
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886786030"
variation 77
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886785985"
variation 79
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:1324865813"
variation 81
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:934151177"
variation 84
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:779125686"
variation 85
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:976049845"
variation 86
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:962770950"
variation 89
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886785664"
variation 93
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1566259715"
variation 95
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1209609625"
variation 100
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1029260671"
variation 101
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1485439709"
variation 108
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1886771882"
variation 114
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:997947410"
variation 118
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1030575876"
variation 121
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:1241527353"
variation 123
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:761715785"
variation 124
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:899546294"
variation 127
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886771689"
variation 129
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1193962886"
variation 130
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1886771623"
variation 132
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1018016380"
variation 133
/gene="LOC107984620"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:900654801"
variation 136
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:762660709"
variation 137
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886771457"
variation 140
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:75868732"
variation 148
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1886771339"
variation 152
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1240337098"
variation 155
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1337616138"
variation 166
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1188421389"
variation 167
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:193193149"
variation 169
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:908380768"
variation 171
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:2137624170"
variation 177
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1566258328"
variation 179
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1886726590"
variation 180
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:573900803"
variation 181
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1172372262"
variation 182..183
/gene="LOC107984620"
/replace=""
/replace="ag"
/db_xref="dbSNP:1886726415"
variation 182
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1419688536"
variation 183
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:555477924"
variation 185
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1327477664"
variation 188
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390875521"
variation 191
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:971254711"
variation 193
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886726173"
variation 197
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:540361706"
variation 205
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886726085"
variation 206
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1023328750"
variation 207
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886725957"
variation 209
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:991355170"
variation 212
/gene="LOC107984620"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:149879782"
variation 215
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886725680"
variation 217
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:913159745"
variation 218
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:187909151"
variation 222
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:959867580"
variation 227
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:927040305"
variation 231
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:539422050"
variation 238
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1159081922"
variation 240
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1313893133"
variation 243..249
/gene="LOC107984620"
/replace="aca"
/replace="acaaaca"
/db_xref="dbSNP:1032599019"
variation 250
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1256621967"
variation 252
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886725078"
variation 256
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:770021326"
variation 257
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:569409896"
variation 259
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:1285714616"
variation 261
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:370044484"
variation 262
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:897805661"
variation 264
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:1702095623"
variation 268
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:758587365"
variation 272
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1036338227"
variation 275
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:967679289"
variation 280
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1475544668"
variation 281
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886164579"
variation 286
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1318275701"
variation 290
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1216898120"
variation 292
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1008873625"
variation 293
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886164419"
variation 299
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:565771403"
variation 301
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886164319"
variation 303
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:1050977850"
variation 307
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:1886164239"
variation 308
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1886164196"
variation 313
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886164153"
variation 316
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886164090"
variation 324
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:750845523"
variation 326
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886163955"
variation 328
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:932479552"
variation 329
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:9600411"
variation 333
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1470458680"
variation 338
/gene="LOC107984620"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:921146980"
variation 341
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1477676824"
variation 343
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1050171150"
variation 344
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886163591"
variation 347
/gene="LOC107984620"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1043848640"
variation 352
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1442028141"
variation 353
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1360177163"
variation 355
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886163454"
variation 356
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1886163409"
variation 361
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1251037246"
variation 363
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886162877"
variation 364
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1886162843"
variation 367
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:1398518454"
variation 368
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1197322103"
variation 369
/gene="LOC107984620"
/replace="a"
/replace="c"
/db_xref="dbSNP:1886162753"
variation 370
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:1886162721"
variation 373
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1325970516"
variation 374
/gene="LOC107984620"
/replace="c"
/replace="t"
/db_xref="dbSNP:946516618"
variation 375
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:547593665"
variation 379
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:1886162573"
variation 380
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1272512924"
variation 384
/gene="LOC107984620"
/replace="c"
/replace="g"
/db_xref="dbSNP:987766074"
variation 396
/gene="LOC107984620"
/replace="a"
/replace="t"
/db_xref="dbSNP:2137599886"
variation 400
/gene="LOC107984620"
/replace="a"
/replace="g"
/db_xref="dbSNP:960368042"
variation 403
/gene="LOC107984620"
/replace="g"
/replace="t"
/db_xref="dbSNP:1593749106"
ORIGIN
gcaagaaggcaaccatgagcaagccaagaagagagccctcaagggggaaccaaaaggctggctggtaccttgatcttggggtttccagcctccagaatggagtcatggcttctgttaattgaccatctggccgcacgctaggaaaaagaatcctctggaaacactatggagtgatggagaaagcaccatctggggagtcagatgacctgctctctatcccagctcatcagggagtctctgagacaaacacttaccagagccactcttgatgatagaattggtgatgtgacagccaccaaaggaatgtgacacaaagtagaaatgagacctgagatgtggcctggacctttaccatggaaatgcccataaattgcgtccctattccttaagattttatttaaagt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]