2024-05-04 18:21:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054376700 2727 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens tryptophanyl-tRNA synthetase 1 (WARS1), transcript variant X5, mRNA. ACCESSION XM_054376700 VERSION XM_054376700.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060938) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2727 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="14" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..2727 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="tryptophanyl-tRNA synthetase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 194 ESTs, 1866 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:7453" /db_xref="HGNC:HGNC:12729" /db_xref="MIM:191050" CDS 227..1642 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /codon_start=1 /product="tryptophan--tRNA ligase, cytoplasmic isoform X1" /protein_id="XP_054232675.1" /db_xref="GeneID:7453" /db_xref="HGNC:HGNC:12729" /db_xref="MIM:191050" /translation="
MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ"
misc_feature 260..418 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="WHEP-TRS domain; Region: WHEP-TRS; pfam00458" /db_xref="CDD:425693" misc_feature order(281..283,287..289,296..298,311..313,326..328, 338..340,362..364,386..388) /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="tRNA binding site [nucleotide binding]; other site" /db_xref="CDD:238473" misc_feature 479..1624 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="aminoacyl-tRNA ligase; Region: PLN02486" /db_xref="CDD:178104" misc_feature order(701..715,734..736,740..745,752..754,806..808, 821..823,935..937,1064..1066,1076..1078,1085..1087, 1145..1147,1151..1156,1160..1165,1172..1174,1241..1243, 1271..1276,1280..1282) /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="active site" /db_xref="CDD:173903" misc_feature 734..745 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="HIGH motif; other site" /db_xref="CDD:173903" misc_feature order(818..820,827..832,965..970,974..982,989..994, 998..1009,1013..1018,1052..1054,1058..1063,1070..1075) /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173903" misc_feature 1271..1285 /gene="WARS1" /gene_synonym="GAMMA-2; HMN9; IFI53; IFP53; NEDMSBA; WARS" /note="KMSKS motif; other site" /db_xref="CDD:173903" ORIGIN
gtttccacggacgcccaggagacagccggttgctgagccgggagcgctgactggcccggctgggcaggatgttcctgaactccaagttgaaaaacctctgaagttcaactcaattctgaaagtcaacaaagaaataaaggaggatgtcaatagtcttgactcgtctgctgaacaaatcctctgacctcaggccggctgtgaacgtagttcctgagagatagcaaacatgcccaacagtgagcccgcatctctgctggagctgttcaacagcatcgccacacaaggggagctcgtaaggtccctcaaagcgggaaatgcgtcaaaggatgaaattgattctgcagtaaagatgttggtgtcattaaaaatgagctacaaagctgccgcgggggaggattacaaggctgactgtcctccagggaacccagcacctaccagtaatcatggcccagatgccacagaagctgaagaggattttgtggacccatggacagtacagacaagcagtgcaaaaggcatagactacgataagctcattgttcggtttggaagtagtaaaattgacaaagagctaataaaccgaatagagagagccaccggccaaagaccacaccacttcctgcgcagaggcatcttcttctcacacagagatatgaatcaggttcttgatgcctatgaaaataagaagccattttatctgtacacgggccggggcccctcttctgaagcaatgcatgtaggtcacctcattccatttattttcacaaagtggctccaggatgtatttaacgtgcccttggtcatccagatgacggatgacgagaagtatctgtggaaggacctgaccctggaccaggcctatagctatgctgtggagaatgccaaggacatcatcgcctgtggctttgacatcaacaagactttcatattctctgacctggactacatggggatgagctcaggtttctacaaaaatgtggtgaagattcaaaagcatgttaccttcaaccaagtgaaaggcattttcggcttcactgacagcgactgcattgggaagatcagttttcctgccatccaggctgctccctccttcagcaactcattcccacagatcttccgagacaggacggatatccagtgccttatcccatgtgccattgaccaggatccttactttagaatgacaagggacgtcgcccccaggatcggctatcctaaaccagccctgttgcactccaccttcttcccagccctgcagggcgcccagaccaaaatgagtgccagcgaccccaactcctccatcttcctcaccgacacggccaagcagatcaaaaccaaggtcaataagcatgcgttttctggagggagagacaccatcgaggagcacaggcagtttgggggcaactgtgatgtggacgtgtctttcatgtacctgaccttcttcctcgaggacgacgacaagctcgagcagatcaggaaggattacaccagcggagccatgctcaccggtgagctcaagaaggcactcatagaggttctgcagcccttgatcgcagagcaccaggcccggcgcaaggaggtcacggatgagatagtgaaagagttcatgactccccggaagctgtccttcgactttcagtagcactcgttttacatatgcttataaaagaagtgatgtatcagtaatgtatcaataatcccagcccagtcaaagcaccgccacctgtaggcttctgtctcatggtaattactgggcctggcctctgtaagcctgtgtatgttatcaatactgtttcttcctgtgagttccattatttctatctcttatgggcaaagcattgtgggtaattggtgctggctaacattgcatggtcggatagagaagtccagctgtgagtctctccccaaagcagccccacagtggagcctttggctggaagtccatgggccaccctgttcttgtccatggaggactccgagggttccaagtatactcttaagacccactctgtttaaaaatatatattctatgtatgcgtatatggaattgaaatgtcattattgtaacctagaaagtgctttgaaatattgatgtggggaggtttattgagcacaagatgtatttcagcccatgccccctcccaaaaagaaattgataagtaaaagcttcgttatacatttgactaagaaatcacccagctttaaagctgcttttaacaatgaagattgaacagagttcagcaattttgattaaattaagacttgggggtgaaactttccagtttactgaactccagaccatgcatgtagtccactccagaaatcatgctcgcttcccttggcacaccagtgttctcctgccaaatgaccctagaccctctgtcctgcagagtcagggtggcttttcccctgactgtgtccgatgccaaggagtcctggcctccgcagatgcttcattttgacccttggctgcagtggaagtcagcacagagcagtgccctggctgtgtccctggacgggtggacttagctagggagaaagtcgaggcagcagccctcgaggccctcacagatgtctaggcaggcctcatttcatcacgcagcatgtgcaggcctggaagagcaaagccaaatctcagggaagtccttggttgatgtatctgggtctcctctggagcactctgccctcctgtcacccagtagagtaaataaacttccttggctcctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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