2024-05-08 06:37:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054372176 4470 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens interleukin 1 receptor associated kinase 4 (IRAK4), transcript variant X3, mRNA. ACCESSION XM_054372176 VERSION XM_054372176.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060936) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4470 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="12" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..4470 /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="interleukin 1 receptor associated kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 339 long SRA reads, 7 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:51135" /db_xref="HGNC:HGNC:17967" /db_xref="MIM:606883" CDS 260..1642 /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /codon_start=1 /product="interleukin-1 receptor-associated kinase 4 isoform X1" /protein_id="XP_054228151.1" /db_xref="GeneID:51135" /db_xref="HGNC:HGNC:17967" /db_xref="MIM:606883" /translation="
MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITVQQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVETMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS"
misc_feature 284..577 /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="Death domain of Interleukin-1 Receptor-Associated Kinase 4; Region: Death_IRAK4; cd08793" /db_xref="CDD:260060" misc_feature order(293..295,299..301,305..310,317..319,398..403, 413..415,422..427,434..436,464..466,473..478,485..487, 491..493) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="IRAK4-MyD88 interaction site [polypeptide binding]; other site" /db_xref="CDD:260060" misc_feature order(332..334,341..349,359..361,368..370,395..397, 407..409,419..421,533..547,551..553) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="IRAK4-IRAK2 interaction site [polypeptide binding]; other site" /db_xref="CDD:260060" misc_feature 767..1630 /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="Catalytic domain of the Serine/Threonine kinase, Interleukin-1 Receptor Associated Kinase 4; Region: STKc_IRAK4; cd14158" /db_xref="CDD:271060" misc_feature order(833..847,857..859,890..892,896..898,995..997, 1043..1054,1064..1066,1070..1072,1190..1192,1196..1198, 1202..1207,1211..1213,1244..1246,1253..1255,1307..1318) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="active site" /db_xref="CDD:271060" misc_feature order(833..847,857..859,890..892,896..898,995..997, 1043..1054,1064..1066,1190..1192,1196..1198,1202..1207, 1211..1213,1244..1246) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:271060" misc_feature order(845..847,1064..1066,1070..1072,1190..1192, 1196..1198,1202..1204,1253..1255,1307..1318) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:271060" misc_feature order(1241..1279,1283..1318) /gene="IRAK4" /gene_synonym="IMD67; IPD1; IRAK-4; NY-REN-64; REN64" /note="activation loop (A-loop); other site" /db_xref="CDD:271060" ORIGIN
cttcgcggcgcttcctagttcggctggttcttctgtcgccggcttcagcagcccgcgcccgggcaggtaaggcattccccgccttaatgcctcggtcaaacgtcgtccgaggtccgcttccaggcctcggcacctctgccccagggttgctggggtcggctgcggaacggaaatctctttatcatccgtgagaaaagttagagaggaagtgggttcctttgacagagcttactccagaagaaagacttgggaatagaagatgaacaaacccataacaccatcaacatatgtgcgctgcctcaatgttggactaattaggaagctgtcagattttattgatcctcaagaaggatggaagaagttagctgtagctattaaaaaaccatctggtgatgatagatacaatcagtttcacataaggagatttgaagcattacttcaaactggaaaaagtcccacttctgaattactgtttgactggggcaccacaaattgcacagttggtgatcttgtggatcttttgatccaaaatgaattttttgctcctgcgagtcttttgctcccagatgctgttcccaaaactgctaatacactaccttctaaagaagctataacagttcagcaaaaacagatgcctttctgtgacaaagacaggacattgatgacacctgtgcagaatcttgaacaaagctatatgccacctgactcctcaagtccagaaaataaaagtttagaagttagtgatacacgttttcacagtttttcattttatgaattgaagaatgtcacaaataactttgatgaacgacccatttctgttggtggtaataaaatgggagagggaggatttggagttgtatataaaggctacgtaaataacacaactgtggcagtgaagaagcttgcagcaatggttgacattactactgaagaactgaaacagcagtttgatcaagaaataaaagtaatggcaaagtgtcaacatgaaaacttagtagaactacttggtttctcaagtgatggagatgacctctgcttagtatatgtttacatgcctaatggttcattgctagacagactctcttgcttggatggtactccaccactttcttggcacatgagatgcaagattgctcagggtgcagctaatggcatcaattttctacatgaaaatcatcatattcatagagatattaaaagtgcaaatatcttactggatgaagcttttactgctaaaatatctgactttggccttgcacgggcttctgagaagtttgcccagacagtcatgactagcagaattgtgggaacaacagcttatatggcaccagaagctttgcgtggagaaataacacccaaatctgatatttacagctttggtgtggttttactagaaataataactggacttccagctgtggatgaacaccgtgaacctcagttattgctagatattaaagaagaaattgaagatgaagaaaagacaattgaagattatattgataaaaagatgaatgatgctgattccacttcagttgaaactatgtactctgttgctagtcaatgtctgcatgaaaagaaaaataagagaccagacattaagaaggttcaacagctgctgcaagagatgacagcttcttaaaactttattggaaaagactcttgactttttatatacacctatctcaaccatttttttaactgatttttttcctaaatattcttctttacctttaacaaggcataggctgttgcaggacagtggttattaaagcatgggttgaacttccaaaatataaaaatagagccaccatatcaacacttagccctacccattagtatcacccccagttcttacagtaatccctgagaaatctccttcaagcatcaccaaacacagtttgaaaattacagggttagcaaaaagagcctgggctgtatgtagggtggaaacactctgatctgaagcccagctgactccactactaatttgctgtaaagctttggacatacacttagctgctgtgagccactaataacattgggctaatatctgctgtgcttctctgacaggtagtcatgaaaatcaaatgatgcaaaatatatacaagcactttgtaaattgtaaaatgatacaaaatttaaagtttatagagccagttacaaaatcctattagtcatatatttatagattgtgttcacagcaatcatttaaccacaaataaaatatcccttgatgatactgccataatgatatgtccattattagattatgttacatgacaaagttgaaggaatttggcagatgcagttaaggttcctaaacaactcactttgagactgttgaaagggcctgacctaatcaagtgaacccttgcaagaagaattctccttgtaagccttgaagaagtatgtgagagggccacattggctaaaacctaaaggtggcctctaggagatgagacctaccttccagttgtcagcaagcaggaaaaaaaaattgggacctcagttgcaaccacaaggaactgaattctgccaaaaatctgagtcagcttagaagagtactccaagcttcagatgataaccacagcctgggctgacacctggatttcagctttgcatgatcctcagtatgagaatctatctgttctgtgctggacttctaatatatagaactgtgagataatgggtcacattggctggatgtggtggctcatacctgtaaatcccagcactttgggaggccgaggcaggcagatcacctgaggtcaagagttcaagaccggcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagacgagcgtggtggtggacacctgtagtcccagctacttgggaggctgaggcaggagactagctggaaccagggaggtagaggttgcagtgagctgagatcgtgccactgcactccagcctgggtgacagagtgagactccatcataaataaataaataaataaatgggtcacattaagcctttaagtttgtggtaatttattattcagtaatagaaaacaaatacagatactctcccatgatgtttttcccatgatgatttcccatgatatttacaggttttgcccacatttgaggggtatgtggaaattatacagagcatgtacagcgggaggcttatagtgtacgtactgaaatgtggggttggagccccaacacagagaccccagcaggacactgcctagtagagctatgggaagggtgctgccaccctccagacttgagaattgtagagccaccagcagcttgcactctgagcttggaaaagccacaggcactcaacttcaaccatgagggaagccacgcaccctgcaaagccacaggagtggagctgcccacggcctcgagggcccaccccttgcaccagtgtgccaggatgcgggacatggaatcaaggaatatgttagggcttttttttttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcatgatctcgactcactgcaagctctgcctcccaggttcacgccattcccctgcctcagcctccccagtagctgggactacaggtgcccgccaccatgcccagctaattttttttgtatttttagtagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatcacccgcctcggcctcccaaagtgccagtatttaaagtttaatgtcttcccagctgggtttcagacttgccaggatcctgttgcccctttctttagccaatttctcccttttgggacaagagtgttttacttattgcctgtaccaccaactgtatcttggaaataaataacttatattttatttcagaggctcataggcggcaggaacttaccttgagtctcaaatgagacttaggacttttgagtgatgctagaatgagttaagactttgggaagggatgattatattttgcaatgtgagaaagacattagatttggggggctgggggtagaatgacattgtttagatgtttgtctccttcaaatttcatgtttaaatgtaatccccagtgttgggggtggaggtggggcctgatgggaagtgtttgggtcatggtggatgatccctcatgaatggcttagagccactggtgatgagtgagttctcactcagttcgtgtgagatctggtggcttaaaagagtctgctccccctttgccttccattgtgattgtaaccttcctggggccttcatcaaaggccaggcaaatattggtgccgtgctagtatggcctgcagaaccgtaagccaaaacaaaccttttttctttataaattacccagcctcagttattcctttatagtgatgcaaaacgggctaactatataaatttgtaatttttaagttatagattgtttttattaaacacttatgaatactg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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