LOCUS       XM_054366715            5456 bp    mRNA    linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens olfactory receptor family 13 subfamily A
            member 1 (OR13A1), transcript variant X5, mRNA.
ACCESSION   XM_054366715
VERSION     XM_054366715.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060934) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5456
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="10"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..5456
                     /gene="OR13A1"
                     /note="olfactory receptor family 13 subfamily A member 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 1 long SRA read, 2 Proteins, and
                     85% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:79290"
                     /db_xref="HGNC:HGNC:14772"
     CDS             3328..4314
                     /gene="OR13A1"
                     /codon_start=1
                     /product="olfactory receptor 13A1 isoform X1"
                     /protein_id="XP_054222690.1"
                     /db_xref="GeneID:79290"
                     /db_xref="HGNC:HGNC:14772"
                     /translation="

MKLWMESHLIVPETRPSPRMMSNQTLVTEFILQGFSEHPEYRVFLFSCFLFLYSGALTGNVLITLAITFNPGLHAPMYFFLLNLATMDIICTSSIMPKALASLVSEESSISYGGCMAQLYFLTWAASSELLLLTVMAYDRYAAICHPLHYSSMMSKVFCSGLATAVWLLCAVNTAIHTGLMLRLDFCGPNVIIHFFCEVPPLLLLSCSSTYVNGVMIVLADAFYGIVNFLMTIASYGFIVSSILKVKTAWGRQKAFSTCSSHLTVVCMYYTAVFYAYISPVSGYSAGKSKLAGLLYTVLSPTLNPLIYTLRNKEVKAALRKLFPFFRN"

     misc_feature    3454..4263
                     /gene="OR13A1"
                     /note="olfactory receptor family 13 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; Region: 7tmA_OR13-like;
                     cd15232"
                     /db_xref="CDD:320360"
     misc_feature    3457..3537
                     /gene="OR13A1"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:320360"
     misc_feature    3556..3627
                     /gene="OR13A1"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:320360"
     misc_feature    order(3622..3624,3631..3636,3670..3687,3691..3696,
                     3703..3705,3838..3840,3844..3858,3964..3966,3973..3981,
                     3985..3993,3997..4002,4135..4137,4144..4149,4153..4158,
                     4165..4167,4183..4188,4192..4200,4207..4209,4216..4221)
                     /gene="OR13A1"
                     /note="putative ligand binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:320360"
     misc_feature    3670..3762
                     /gene="OR13A1"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:320360"
     misc_feature    3799..3864
                     /gene="OR13A1"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:320360"
     misc_feature    3964..4041
                     /gene="OR13A1"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:320360"
     misc_feature    4075..4167
                     /gene="OR13A1"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:320360"
     misc_feature    4186..4263
                     /gene="OR13A1"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:320360"
     polyA_site      5456
                     /gene="OR13A1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tttaatttcagagattttgaggactattattgttatttctttaaagtgataaatgtaatccaagatgccttttttcccccttcagaagcttgagtgcccaagggtttgataaatgtggaaaataaccgctgttcgaatatcctgttggcctgctggtgagatgtcatcgtgttgtctgaatgcaaagaaatgactggctgaggctgtaaagaaatcttgtggtcattctcatggaaagaggattggagccccgattctttgatctcattattgaccagttgattgagaagactgtcctcctgtccccacccaatcacaataagtgggtaattacctgagggctaatttgctccttgaatgtgaatacatttgtggaaatttccttgtgctcagcacctgttcaaaacatccatttgtattgcagagctattgtttttctaatctcattgtggagctaagagagagattgtgtttaaggtttccttcgtaataggttttcttgctccaggaaggatgcgtgacagactctgcacactgctgcttggtaggtgttcagtgatggatgcgttttccatctcccaggtacagctgcagctgtgctgactctggtgcgtttgtaatatgcactgtggagtgcaccatgatttcatgatggctggagaaatctggtggctagaattctagggaggaggacatgagtcggaagtgcagaaacctcacactgggacattgatggagaaaatccaattctgtccctggagttaaagaggagtcactcactgggccatcataagagcaaataaagttacagttatttcttcagatccacaactcaaactcagcgaaagtaattattcactctttttgtcccaaacaataatgaaatcagctaaagcatattgtatttattacttccactcaagttattgagctgttctgacaccttgttgctgggaagatacacagatggaacaccatcatttccattgattctgatcataccccacgctaatatagccttattgctctgagtcatagggattttatgcttgcctattcaaaaaacagtttttaccttattaaaaggtgatatgacctgagctggagatgatgtttggtcattttgtgtaaaccttttaatattttagtggtaaatacatttcttgaatcttgacaaaaacataattaaaatgaacatatttaaaatggacatcttccaaatgttcatttttaaaacaaacatcttccaaatgttcatttttaaaatgaatatcttcgttaacttttttttttttttgagacggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccagagtagctaggactacaggcgcccgccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcgatctcctgaccttctgatccaccctccacggcctcccaaagtgctgggattacaagcgtgagtcaccacgcccagcctcttccttaacttttaatgaataaagagttgaaagggaaaaaccaaatgtgcactatgctgattttatcttgagctgtacagaatgtgcagtaacttaagaatataagtcattctgctgttattcatactagcctattctttagcattatttaaacacacatatttgagtgtctacacactgcctgctaggcagggggctgggtgccaagaagggatgtccagagataaacgggcatatgtgttaatcttttagggcacagtccagtaacctgatcaaggagtgacgtgtattgtgtactaggatagaagtcagtatcagaggaaacacaaaggaaagagtggtactttctccccagggaagggatgctcagaaagagggggctgattatgtccctggttcatgagaaaaagggcattcctggctcagggagtgggaagaacaaaaccaagaaatcctggaatggcttggtgcatcagccagtctgtgagtgcagggcatggctggagttctggctttaagatgagtgggaagaaaggctggagaggaggtggatccaggaaaagttgctgggagcatttattcttttggcaatgggaagccatggaagaactgttgtaaggaggattctgtgtgatacatctgccttttagagaggtcattttatagaaaaagtagaaaatacagaccagcaaaaatttaaaaagtgaaaacaatcactgttcaagctctggtctagcactcaccagtgtttttcctacagatgcatatacaaacatgcttttacattttatttttattttaaatttttcactatcctcaatatcagtggaaacaaatctgcttttttaattttttttttaaaaatgagatcctattgtacacattattttaaattttttttcattctttcctttttttaaaattaaaacaattttttttgagacagtctcactctgtcgcccaggctagagtgcagcatcgtggtctcagctcaccgaaaccttgcctcccaggttcaagcgattctcctgcctcagccttccaagtagctgggattacagacatccaccaccaccgtgtcaggttaatttttgtatttttagtagagaatggggtttcaccattttggacaggctggtcttgaattcctggcttcaagtgatctgcctgcctcggcctcccaaagtgtcattctccttttaaaagcatcagtaaaacacttccaaagcattactttgataattagacagcatttatatcaatttaccataatatactcacgtttaagggtatagattgttttaaatttccactattataaatagtgctgctctgacaccttcaggatgctttttattattccttaggatacatttctggaagaggaagttccggctcaaatggaatacatattttaaaaggcctgcatctttgcagccattctaatgctagttaatatcatgcttttctaactttgccagatcatggatgatgaagactagatcatggatttaatttgcatttgtttgaggttgaatgatgcttcatgagtttaactggccaactgtatttattttttataaactgagtgttcacgccttttttctactgtaatattggggtgtttatcttaatcaatatgccctaatgcatctctatctttcatgcagtgatgtgaggtgtggaagaaacacgggagcagccttcctcaggacacctcttgtttatctctctagctctgaaatcacatgaagctgtggatggagagtcacctgatagtcccagaaacccgtcccagcccaaggatgatgagtaaccagacgttggtaaccgagttcatcctgcagggcttttcggagcacccagaataccgggtgttcttattcagctgtttcctcttcctctactctggggccctcacaggtaatgtcctcatcaccttggccatcacgttcaaccctgggctccacgctcctatgtactttttcttactcaacttggctactatggacattatctgcacctcttccatcatgcccaaggcgctggccagtctggtgtcggaagagagctccatctcctacgggggctgcatggcccagctctatttcctcacgtgggctgcatcctcagagctgctgctcctcacggtcatggcctatgaccggtacgcagccatctgccacccgctgcattacagcagcatgatgagcaaggtgttctgcagcgggctggccacagccgtgtggctgctctgcgccgtcaacacggccatccacacggggctgatgctgcgcttggatttctgtggccccaatgtcattatccatttcttctgcgaggtccctcccctgctgcttctctcctgcagctccacctacgtcaacggtgtcatgattgtcctggcggatgctttctacggcatagtgaacttcctgatgaccatcgcgtcctatggcttcatcgtctccagcatcctgaaggtgaagactgcctgggggaggcagaaagccttctccacctgctcttcccacctcaccgtggtgtgcatgtattacaccgctgtcttctacgcctacataagcccggtctctggctacagcgcagggaagagcaagttggctggcctgctgtacactgtgctgagtcctaccctcaaccccctcatctatactttgagaaacaaggaggtcaaagcagccctcaggaagcttttccctttcttcagaaattaacttgtgtcttctgaagtttttgtccttggagactgcagttttagtggagtctgatgagcaagtttctggactgggaggtaaatagacttgttttttctaacccagcagaacctgtgcatggatgagctgggagtgctggttccctgagacttggtgatggggggattgcggtaggtgtgacccaccagcctctgagacaccagatctcttggtctgactccaaggtggtgtcagtgctgagttggcagagaaacacagggcctaggaggagaaaagtgttccttgtgttttcaactcatagccacatcaaacattttccttttgtatgtacaacactcagggtgtaaattctaaaatcacacctagaattcagctgtgtgggtctaaaaagttaggcagaattgtggaccccacagcccctgaagggttgtcagactgaagctttgttttaaggtgaccactggcctctaggaaaccttctacccccattatcttacctcaactgtttcctctggagccacttggacttcaaaaatagtttgattttaatgcaaactgttgtttctgcttttgtcttttcttcttactaacacttcagatcctgagtatctgacctacctaattggcctggagcgaggacagctgccatgagtcagctctaataagttaaacggcattgtagtaaggcattgctatccttccattgtttcagataaaactgggtgaacgaatcctctgtgtctaataaagacaggtcttgtgcttgtgctccatgctattacaaaactgcactggaaaatccattatctttatcatgatccattaaagatgacagaactaagatgtgaatgtttagttgtatcttggaattgaatagaaacatatcattcgatatgtgtgtgaagctgagagtagagtttgatatttgatttagatgggatggttcttcatccagtattctcattatcattcatcagaagctcattgactcaagtatttgatgaattgtagctgactgtagctttggcacgtagattcttacagacagtttaatctcttctaagtgaattctgagtcccaaataacatgttgaaaccctcagtggtctcactttccaataaacatggctttgaaaaccagca

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