2024-05-08 12:47:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054355597 4774 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens RAB23, member RAS oncogene family (RAB23), transcript variant X1, mRNA. ACCESSION XM_054355597 VERSION XM_054355597.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060930) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4774 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="6" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..4774 /gene="RAB23" /gene_synonym="HSPC137" /note="RAB23, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 18 ESTs, 724 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:51715" /db_xref="HGNC:HGNC:14263" /db_xref="MIM:606144" CDS 592..1305 /gene="RAB23" /gene_synonym="HSPC137" /codon_start=1 /product="ras-related protein Rab-23 isoform X1" /protein_id="XP_054211572.1" /db_xref="GeneID:51715" /db_xref="HGNC:HGNC:14263" /db_xref="MIM:606144" /translation="
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP"
misc_feature 619..1098 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab GTPase family 23 (Rab23)-like; Region: Rab23_like; cd04106" /db_xref="CDD:133306" misc_feature 619..624 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab subfamily motif 1 (RabSF1); other site" /db_xref="CDD:133306" misc_feature 637..660 /gene="RAB23" /gene_synonym="HSPC137" /note="G1 box; other site" /db_xref="CDD:133306" misc_feature order(646..663,700..705,709..711,952..957,961..963, 1045..1050) /gene="RAB23" /gene_synonym="HSPC137" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133306" misc_feature order(661..696,706..711) /gene="RAB23" /gene_synonym="HSPC137" /note="Rab subfamily motif 2 (RabSF2); other site" /db_xref="CDD:133306" misc_feature order(691..693,706..732) /gene="RAB23" /gene_synonym="HSPC137" /note="Switch I region; other site" /db_xref="CDD:133306" misc_feature order(706..708,718..741,760..762,766..768) /gene="RAB23" /gene_synonym="HSPC137" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133306" misc_feature 712..714 /gene="RAB23" /gene_synonym="HSPC137" /note="G2 box; other site" /db_xref="CDD:133306" misc_feature order(715..717,721..729,772..774,778..780,799..804, 811..813,823..825,829..840,1096..1098) /gene="RAB23" /gene_synonym="HSPC137" /note="putative effector interaction site [active]" /db_xref="CDD:133306" misc_feature order(715..720,724..726,778..783,802..804,808..810, 814..822) /gene="RAB23" /gene_synonym="HSPC137" /note="putative GDI interaction site [polypeptide binding]; other site" /db_xref="CDD:133306" misc_feature 715..729 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab family motif 1 (RabF1); other site" /db_xref="CDD:133306" misc_feature 766..780 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab family motif 2 (RabF2); other site" /db_xref="CDD:133306" misc_feature 781..792 /gene="RAB23" /gene_synonym="HSPC137" /note="G3 box; other site" /db_xref="CDD:133306" misc_feature order(790..792,796..828) /gene="RAB23" /gene_synonym="HSPC137" /note="Switch II region; other site" /db_xref="CDD:133306" misc_feature 799..816 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab family motif 3 (RabF3); other site" /db_xref="CDD:133306" misc_feature 823..837 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab family motif 4 (RabF4); other site" /db_xref="CDD:133306" misc_feature 850..867 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab family motif 5 (RabF5); other site" /db_xref="CDD:133306" misc_feature 931..945 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab subfamily motif 3 (RabSF3); other site" /db_xref="CDD:133306" misc_feature 952..963 /gene="RAB23" /gene_synonym="HSPC137" /note="G4 box; other site" /db_xref="CDD:133306" misc_feature 1042..1050 /gene="RAB23" /gene_synonym="HSPC137" /note="G5 box; other site" /db_xref="CDD:133306" misc_feature 1090..1098 /gene="RAB23" /gene_synonym="HSPC137" /note="Rab subfamily motif 4 (RabSF4); other site" /db_xref="CDD:133306" ORIGIN
gtgagtgcgttttcgactttgctcgacatttttttgctcacttggccacttaagatgtcatctggtcaagaaaataagagttcacgatctaggagatcctgctcgtctctgatctccccactgccctcccgggctcccttggaggcgcctggaaagctgagccgccgccagccacccgccagaacaggggcggggcagggccgcgggtccgcacagagcatgcgcagacgaagcacggcgcatgctccgcagcgcggcgggtccacagatgaggggagtcgagactcccgcgccccaccacccccggcggagctgctgctgagccactcaatctgagccctggctactaataaagttcgtttaaaaatcataatcattcttaagagagcgaaagagggtgcgaactagccgctcggccccgcagggagagctggcgcgtcgggaggagacagcggcggcagcggttgcgccgcgaccaggaggagccggtggcgccgggcggcgggtccgcggccggtgggggacgatttgagagggaagatctgatctcctagaattagagttggtacagaaaccatttcagctccaaaaatgttggaggaagatatggaagtcgccataaagatggtggttgtagggaatggagcagttggaaaatcaagtatgattcagcgatattgcaaaggcatttttacaaaagactacaagaaaaccattggagttgattttttggagcgacaaattcaagttaatgatgaagatgtcagactaatgttatgggacactgcaggtcaggaggaatttgatgcaattacaaaggcctactatcgaggagcccaggcttgtgtgctcgtgttctctaccacagatagggaatcttttgaagcagtttccagttggagagagaaagtagtagccgaagtgggagatataccaactgtacttgtgcaaaacaagattgatcttctggatgattcttgtataaagaatgaggaagctgaggcactggcaaaaaggttaaagttaagattctacagaacatcagtgaaagaagatctaaatgtgaatgaagtttttaagtatttggctgaaaaataccttcagaaactcaaacaacaaatagctgaggatccagaactaacgcattcaagtagtaacaagattggtgtctttaatacatctggtggaagtcactccggtcagaattcaggtaccctcaatggtggagatgtcatcaatcttagacccaacaaacaaaggaccaagaaaaacagaaatccttttagcagctgtagcataccctaagatgttttgggaggaaaacaattgaattacattgtgcaatgcattaagaaacccatccagctgtcatggtatgttacaaggttttcagcagactttgctcctaatggctctctgaaagtgacagacttaaatattgctctgcagtgcttttcagaatgtagagtgagacctctggtggaaaaattattgccctgtggactcctttaattttttttacattagacgaagcttctcctgtttgtaaaggaatgctataagaaatttcaaacacaggttttgcggaattttaaatgctggaaaacataaatgaaatgcctaaatatattgttacagattttaatactgtggatcaaggaaagatagcaagcattcttttcctgaaattggtcatgtagcttttctgcgaaatagtattgaatctgaatactttcacaaaataatactgaaaggtaaaccctaaatcttgccagactgcattagtattttggcattgaaacttgtgcaatatctgtgtaatgtagaatgtggggtgtgcatgcagatgtctggtactggagtaagctgaaggtatgtgcagtatttaagaaaatgtacattctaattaattcacttataaaaccatttacatattgtgtatatgtttttattttcaaatgataaactctagacatatattttgcaaaatgagcttgggtttaaaaagtgctttgtgccaaaaatatcatacctaatttttatagtgctttactatcagaatttatattgtttattatatcttttaaaagcagtaagcagttttcatctgacagcgtagataaaagaggagtataggaatttgaatgctagagcatctcccaggtgagccttattgcagatctttttgatatagtcacccataagcatggtgagctcctgctctcataaggtcagccaaagccccttaagaaggtacacagcacatctgcagtcattcaggaggtcctgtgaagtgtggtgatgcatctaacaccttttgctgctcactgagaacccagctttgaacttacaagattacactaaccatttttaaagtgcacaaaaatattattattagtcttaactaaaattacatattttataatgccctgcaactctaaaccatccttttgtttacacatttttgtatggtattttaagattatcaatcacttcaacatttctataaccttgtttgtatagcactttctcaagagctgtcagtcccacatacagaatcatttcttttacaaaatgatttaatatgtaatcatgtgtcaggacataaattttgtcacttgggacagtagctttccagctaagataattgcgtgaactctgttaaaactgattatcactcatcaatggctttatttttaacctataaataacccctttcaatatacctggtttttacagcattgcaaaatctgtaaaaataacttttattggaaaatgtcatgaagtcatttttcattatttgtactaaacaatgttttatgtactccttttgtgttttatcttttgtttttccatctgtactcccctcatcctcctaatgttgagaaaatcaaatttcctgggtgtgtccttgttaagtgatcaaaagtaaatgttctctttgccattttagatggaaaaataaaaaaaattaaaaagtaaatttttgcttttcattatattgaaatgatctggcattatctatttcacagtaatgtaaaatgcttatttttatgtcaccagttgtcaccactcccattgctgatagtgacataggttttgggggcaaaattcagttcctaacaaacagtggatactgctaatgagtcatcttttctactctcttcaattttctactctctactctcctctttaatttttgcacaaaataatactttgcaacaaatagtcttttgtctttattggcagaaaaatcacttgttatatgtgttctagttagttctttttcatgttagctgtgtggctaaaagcgtgttacctttctatatttaaaaaaagtaatctctgaggatagttacagttcctgtaatataattttatgtacctagttttatctttttttaaataagaactgaagagagagctttgttacatatttgaatttttaatttgcactgctgtattttaaacctaaccataattagtcatttaaaataattaagtaggcctgaaagtcagccatgttaatttctcaatttaatcaattcttaaagccttcaaaaattgacattttttttccaagacccttcattctcttaaataactttaattttatgaaaccatgtatactaaagaaaaacttttccaagattccaggtgattgtgcatttgtgctctaatctacttttttaacattacggctaatcttttgcgtagacatatcgctgtggaataactgccatatttcagagttcctcaggtttccttttccttttccagtctctgtctatgaattaaatagtatatagaatgacccatataaggcaatatagttaaataaaaccaggttaaatgatttcctttgtatctgcccaaagttgatagcacacgttactttttcaaaataaagctaaaactaccaaaaagaggatgaaaactttttcctcattatggagtgaagttctaggtggttgctttagaagttggcagtgcagtgctcagaaggaactctcaataaataacatgtactccttggacctgtgagttttaggaaactggaccttttctgaagaccttagaatagggagttggccttaggacctaatgtcccaacttagtgttggacccttttaatataagatattgttaattattagcatacttttcaaaacctttgaaatagttactgctaacctgataaaatgttcccattaatctatcattagtctgtttctctgaaaacaaaatgcattgatgaggtgaaagcttgttccacatggcacctacctaatgaacaggacttactcagtttttaactgttaagaatgtcacatgtactattgtcactccttaggttttcagctataaaacatgtaagtctctcatcatacagatgaattcatttgctaacaaaatatttaaaacccgcagtagactctgaaatatccagtcatcaaactcctggctaactggatgatttggctataataatctttattattattattttcatctgtctctcgaaatatctacagtaggatgttagtaaatggtcttttaaaagcaaaaaattggggataaaaggaaaactgaattccttctatatttttattactaataaataatgcttttgtaaatttgaatggaaaaccacttgtatgtattgctatttggttgcagttacactctggagcttaatttaaaacactactctaaaaatttcatgaaggatgaattccaataatcagaaaataaatgcatttcaaagctaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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