2024-05-08 14:34:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054354135 4056 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X6, mRNA. ACCESSION XM_054354135 VERSION XM_054354135.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060930) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4056 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="6" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..4056 /gene="RWDD2A" /gene_synonym="dJ747H23.2; RWDD2" /note="RWD domain containing 2A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 200 long SRA reads, 9 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:112611" /db_xref="HGNC:HGNC:21385" CDS 515..1393 /gene="RWDD2A" /gene_synonym="dJ747H23.2; RWDD2" /codon_start=1 /product="RWD domain-containing protein 2A isoform X1" /protein_id="XP_054210110.1" /db_xref="GeneID:112611" /db_xref="HGNC:HGNC:21385" /translation="
MSASVKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPKVKIDLQVTMPHSYPYVALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRKLVYEPSTQAKPVKNTFLRMWIYSHHIYQQDLRKKILDVGKRLDVTGFCMTGKPGIICVEGFKEHCEEFWHTIRYPNWKHISCKHAESVETEGNGEDLRLFHSFEELLLEAHGDYGLRNDYHMNLGQFLEFLKKHKSEHVFQILFGIESKSSDS"
misc_feature 557..916 /gene="RWDD2A" /gene_synonym="dJ747H23.2; RWDD2" /note="domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain; Region: RWD; smart00591" /db_xref="CDD:214735" misc_feature 989..1357 /gene="RWDD2A" /gene_synonym="dJ747H23.2; RWDD2" /note="Protein of unknown function (DUF1115); Region: DUF1115; pfam06544" /db_xref="CDD:428998" ORIGIN
aactgcggctgcggttccgagcggggtctggggctgttaccattgagtgaccagaaagggtgaggcccccgcggtggcccgggggttggggccgagggtcgcgggccctcagagcactgcggccgcggaggcacagcctccgcctccaaatccgggcctctgggggcggcaggccctgcgttcctgggaagccggggttcctagtggtcttggctaggggcgggggtggggaatcagccccgtcgctgggcctcggacagggcgacctcgcccacagtgagcgccgccggcggcccgcatccccctctccgacgtcgaggtcatctcccaaacctttgaatctgggaagccttctccggctgccgtctccccggctctcggtgcaaagcgttcctgcagaattgcttccacgtaaagggaccttcgggaaatttcgctggataccggctggcattgacaaacccagcgtccctgagccttgtgaggtttccaggcaggctgattgcgaggcaacatgtctgcttcggtgaaagaaagccttcagcttcagctactggagatggaaatgctgttttctatgtttcctaaccaaggagaagtaaaacttgaagatgtaaatgccctgacgaatataaagaggtatttggaaggcacaagggaggcgctgccaccaaaaatcgaatttgtaattacactccagattgaagagcccaaggtgaaaattgatttgcaagtgaccatgcctcacagctacccctatgtagcattgcagctgtttggacggtcatctgaacttgacagacatcagcagctacttctcaacaaaggtctcacttcttacatagggacttttgatccaggtgagctctgtgtatgtgcagcaatccagtggctacaggacaacagtgcatcttatttcctgaacagaaagcttgtatatgaaccatctacacaagcaaagccagtcaagaacacattcctccgaatgtggatctacagtcaccatatatatcagcaggacctaaggaaaaagattttggatgttgggaaaaggttagatgtgactggattttgcatgacaggaaagcctggtataatctgtgtggagggtttcaaagagcactgtgaggagttctggcacacaattaggtaccccaattggaagcacatttcctgtaagcatgctgaaagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacacccacttgtctttcattattggaaatctaaatcaagtttaaaatgagaacaggaaggacatgtttacttccttttttgagacggtgcgatctcggctcactgcatcctcagcttcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcgtgcgccaccacgcccagctaattgttatatttttagtagagacagggtttcatcatgttggctaggatggtctcaatctcttaacctcgtgatctgcctgcctcggccttccaaagtgctgggattacaggtgtgagccaccgcgcccagcccgtttacttcatttcttactttaaactcctatttcgagtgttttagtaaaactagatcctaatagcagtggcaaaggactcatagacatgaagtcccacgagttaaaagatgacacacaatgctatgtgttctggctgtttatatcagttcatgatactagcaatcctgataccagtattagtttaattcttatccagaaaagataaacacatggttccttgtctacaaagtattcgcctgtttcaatccaacctttgcctgtgtgccagtatgcattactataaagggcaagagactgttgaggggaccagtgtggatatctgcatcattaccttattgggaaaaaaaaaatctaattctacagtccgatgatgttactgccatctcctctgaaaattccaagctccacaggcttcaccaggcttttcaaaatgagagtttattttaatgattaaaaaccgctatttaagtagctcttgccaagccttttcattaccaggtctccatccctccccaagtatttctgcgagtctcatgtgctaagagatgtcttgagcagcctctgcagctttccgtgtttctgtggtcagctactgctgccctttcccgggaggcattccattctcctactgggtcctctcaagatgccaaagcttggtgctgggatttaggaacacatcctgttagatgtcagacagtgctgcttgtgctggggagcctacagaacttctgatgaaactaccatctggttttaccctctgtgccgtggatgcagacgtgtccttgggctacagagaggacatgatggagcaggaggccctatcccaaggaggtgttagaactgggtccactttgtactgcctctttcttcttaggtcacaatgagtgtcctctcagggcacaactcagatcttcaacccatggctcgctgtaggcctgccccgccaggtcctccagcttgccattcatgtttccatcctagccttggttgtgctggaactcaggctggagcctgacactttgcctatatgcaaagggaagaaataggacttacattgccaaggaatcacttcttaatgtttgccagcactaaaaacaacaaagtacaggaatctttttcccccacagtctccacaaagctatcaataagtataattcgcatttacaagttttaggccttcaacagatgtaactccatccaaatgaatcaatatgtgccatcaacctaccttatagaggtgtttttcctgattacatgagcaaaagtagctacagaaagatgggtgtaaagaaaaggcaataaattctaggttatgaactctactgcttctggagctatttctgagatttttcagaacctacttttttataaataagtctaatttgagcattctgcaatactttttttcctatcaggaaaactaatgcagatagtattatggggacgtgtaggttttatagaaaaaaaaagtacatgtataattcaaaactcaactttgtatgtataggagtctgctggttgtttgtacagcctgatatgagcacataataaaagtccgtcattccccaaccccctccccctacacacacagcttattttgggaaactgccccttccctgtgtgatttgggaagagaaagtgataggaatcaagttgtcctctggcagcctcctggagagatggctgtgagctcttgctgcttaaacctctagtgccaccctcatttctgacctactgaatgctcagctgtttggcatttcctttgaatgacccagcatcttcccttttgttgtcggaaatcagaatcagtctctattgcttgtaacttaagaatctggatattctgtttattatattcttaaatggttatttggaaaatgtgctcatttataaaagttacagtgtctttttaaagtttgctgaagtaaatgaagcatatcgtcaagta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]