2024-04-29 13:53:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054348271 1380 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens HESX homeobox 1 (HESX1), transcript variant X3, mRNA. ACCESSION XM_054348271 VERSION XM_054348271.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060927) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1380 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="3" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..1380 /gene="HESX1" /gene_synonym="ANF; CPHD5; RPX" /note="HESX homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 32 long SRA reads, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:8820" /db_xref="HGNC:HGNC:4877" /db_xref="MIM:601802" CDS 464..1021 /gene="HESX1" /gene_synonym="ANF; CPHD5; RPX" /codon_start=1 /product="homeobox expressed in ES cells 1 isoform X1" /protein_id="XP_054204246.1" /db_xref="GeneID:8820" /db_xref="HGNC:HGNC:4877" /db_xref="MIM:601802" /translation="
MSPSLQEGAQLGENKPSTCSFSIERILGLDQKKDCVPLMKPHRPWADTCSSSGKDGNLCLHVPNPPSGISFPSVVDHPMPEERASKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNTNLLE"
misc_feature order(788..802,806..808,857..859,875..877,914..916, 920..925,932..937,941..949,953..958) /gene="HESX1" /gene_synonym="ANF; CPHD5; RPX" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 794..955 /gene="HESX1" /gene_synonym="ANF; CPHD5; RPX" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(794..796,803..805,923..925,932..937,944..946) /gene="HESX1" /gene_synonym="ANF; CPHD5; RPX" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
ctctcccgcgagcgcgggcgtcggaagcggcggaggtggcagtgtctgccctgggatggccttccctgcacgcgcgcgtttgtatctaaatcgcaggggaccgtctcttcctcagcttgccggcgcgaggagccagagcctcgaaacaccatgcaccccagctctaaagaaggaagactttcaagaatggagtgtagtggcatgatcacagttcattgcagcctcaacctcctacgctcaagtgatcctcccacctgagcctcctgagtagctgggatcacaggcgcatgctaccacgcccggctgaaggtttttcaatttttgaagagacgaggtcccactgtgttgcccagcccccttgtcagcggagctataaggtgaactgcaggaagatcccagccctatacacgtggggcagagccagcagaggccagagctgttgctctgtgcagaccacgagaggatgtctcccagccttcaggaaggcgctcagctcggggaaaacaaaccctcaacttgctccttttcaattgagagaatcttaggactggaccagaagaaagactgtgttccattaatgaaaccccacaggccctgggcagacacctgcagctcatcagggaaagatggtaacttatgtctacatgtcccaaatcctcccagtgggatttcattccctagcgtggtggatcacccaatgccagaagaaagagcttcgaaatatgaaaattacttttcagcctcagaaagactgtctttgaaaagagagttgagttggtatagaggccgaagaccaagaactgcttttactcaaaaccagattgaagtgttagaaaatgtctttagagtaaactgctatcctggtatcgatattagagaagacttagctcaaaaattgaatctagaggaagacagaatccagatttggtttcaaaatcggcgtgcaaaactgaaaaggtcccatagagaatcacagtttctaatggcgaaaaaaaatttcaacacaaatctgctggaatagatagaaaactaaacaagtgaaattatcttctaattgcagagcatgaagaatcagtggaaatattaagtgttaaaatgtgatgttttctttcctgcatttaatctgaatattgtcattttttctgaaaatatattgtaaatactattatagcatggtacatatttgggcacttttagttatagtaaagaccttttatatatattttaataaacattttcagaaaagattgctattttttaagtaagccaaattaatctaataaattagtttgttaaaatcaatagactcatgactaagtgattccacaagctggattctaattataaagtatttcaagtaaaataatctgaagaacaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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