2024-04-30 04:16:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054327053 3569 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens XK related X-linked (XKRX), transcript variant X1, mRNA. ACCESSION XM_054327053 VERSION XM_054327053.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060947) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3569 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="X" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..3569 /gene="XKRX" /gene_synonym="XKR2; XPLAC; XRG2" /note="XK related X-linked; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 6 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:402415" /db_xref="HGNC:HGNC:29845" /db_xref="MIM:300684" CDS 575..1720 /gene="XKRX" /gene_synonym="XKR2; XPLAC; XRG2" /codon_start=1 /product="XK-related protein 2 isoform X1" /protein_id="XP_054183028.1" /db_xref="GeneID:402415" /db_xref="HGNC:HGNC:29845" /db_xref="MIM:300684" /translation="
MNTRPQHSERTSTMDRVYEIPEEPNVDPVSSLEEDVIRGANPRFTFPFSILFSTFLYCGEAASALYMVRIYRKNSETYWMTYTFSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEEQEEPYVSLTRKKMLIDGEEVLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVSLISAEVPLGRVVLMVFSLVSVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITIWRTLEITSRLLILVLFSATLKLKAVPFLVLNFLIILFEPWIKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSALQLRLADRDLVDKGQNWGHMGLHYSVRSFVHGKSFCLEP"
misc_feature 716..1681 /gene="XKRX" /gene_synonym="XKR2; XPLAC; XRG2" /note="XK-related protein; Region: XK-related; pfam09815" /db_xref="CDD:430847" polyA_site 3569 /gene="XKRX" /gene_synonym="XKR2; XPLAC; XRG2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
caaaggtcctgagagcgcgcaggtgagcgggccagctgatagctacagcctagcaatagctaggatacctaggcactgaactgaatcccctcttctgccctccttcttctgcgcccgctcttctgccctggctcagctctccgctgacttgagaggacacactggtcaggactctttgtgaggagctgctgagtgtcggtgcccccgacagatcggctacaccctgcctgaggggctgcgaaaggagccgccacggaagccgctgttctcatgactcttcacgtccctggagttggactctggatggggcgctgggatgcttgcttttgtcttgttcaagtttcacagcaagtatgttgacgattggaatcggggccaatcaagagtcaagttcaaagtggtactcctgggctttccatcccagactccaagtcgaatctgagtctagaagagagcggtttcttgctctaactagtgaatctctgttcccaaactggacttgacagagctctcctcacctatacttggactgtagcggccatagggttctcttggggatgggtgggagggtgctatgaacacaagaccacaacattcagaaagaacctcgacaatggacagagtttatgaaattcctgaggagccaaatgtggatccggtttcatctctggaggaagatgtcatccgtggagccaacccccgatttacttttccatttagcatccttttctccacctttttgtactgtggggaggctgcatctgctttgtacatggttagaatctatcgaaagaatagtgaaacttactggatgacatacaccttttctttctttatgttttcatccattatggtccagttgaccctcatttttgtccacagagatctagccaaagataaaccgctatcattatttatgcatctaatcctcttgggacctgttatcagatgtttggaggccatgattaagtacctcacactgtggaagaaagaggagcaggaggagccctatgtcagcctcacccgaaagaagatgctaatagatggcgaggaggtgctgatagaatgggaggtgggccactccatccggaccctggctatgcaccgcaatgcctacaaacgtatgtcacagatccaagccttcctgggctcagtgccccagctgacctatcagctctatgtgagcctgatctctgcagaggttcccctgggtagagttgtgctaatggtattttccctggtatctgtcacctatggggccaccctttgcaatatgttggctatccagatcaagtacgatgactacaagattcgccttgggccactagaagtcctctgcatcaccatctggcggacattggagatcacttcccgcctcctgattctggtgctcttctcagccactttgaaattgaaggctgtgcccttcctagtgctcaacttcctgatcatcctctttgagccctggattaagttctggagaagtggtgcccagatgcccaataacattgagaaaaacttcagccgggtcggcactctggtggtcctgatttcagtcaccatcctctatgctggcatcaacttctcttgctggtcagctttgcagttgaggttggcagacagagatctcgtcgacaaagggcagaactggggacatatgggcctgcactatagtgtgaggtcctttgtacatggcaagtctttctgtctagaaccctaaagaagcctggctgttcccgtctcagcatacacatgttatctcatatgccaccttctcaaaaaggacttccctgatcactctatttaaaatagcctctccagatacgtttgtcagcttgctcctttctgcctgtggatgccaacaaagaagcatcattaaagtctctcttctcccttccgtcgtgtctaagtcagagtctcctaaagagcccgaatagctgaggaagctcttcattggagagttgaggtttgaaacaaccgacgagagcctgaggagccattttgagcgatggggaatgctcacagactgtgcggtaatgagagatccaaacaccaagcgctccaggggctttgggtttgttacatacgccactgtggaggaggtggatgcagccacgaatgcaaggccacacaaggtggatggaaaagttgtggaaccaaggagaactgtctcaagagaagattatcaaagatcaggtgcccacttaactgtgaaaaagatatttgttggtggcattaaagaaaacactgaaaaacatcagctaagagattattttgaacagcatggaaaaatggaagtgattgaaatcatgactgaggcagtggcaagaaaaggggctttgcctttgtaacctttgacgaccatgactccatggataagattgtcattccgaaataccatactgtgaatggccacaactgtgaagttaggaaagccctgtcaaagcaagagatggctagtgcttcttccagccaaagaggtcaaagtggttctggaaactttggtggtggttgtggaggtggtttcagtgggaatgacaactttggtcatggaggaaacgtcagtggtcgtggtggctttggtggcagccatggtggtggtggatatggtggcagtggggatggctataatggatttggtaatgatggaagcaatttggaggtggtggaagctacaatgattttggcaattacaacagtcagtcttcaaattttggacccgtgaagggaggaaactttggggcagaagctctggcccctatggtggcggaggccaatactttgccaaaccaccaaaccacaatggctatggtggttccagtagcagcagtagctatggcagtggcagaagatgttaattaggaaacagagcttagcaggagaggagagccagagaagtgacagggaagctgcagtttacaacagattcgtgaactcagccaagcacagtggtgacagggcctagctgctacaaagaagacatattttagacaaatattcatgtgtatgggcaaaaaacttgaggactgtatttgtgactaattgtataacaggttattttagtttctgttctgtggaaagtgtaaagcatttcaacaaagggttttaatgtagatttttttccttgcacccatgttgttgattgctaaatgtaatagtctgatcgtgacgctgaataaatgtctttttttttttaatgtgctgtgtaaagttagtctactctgaagccatcttggtaaatttccccagcagtgtgaagttggaattccttcagggtgatgccaggttctatttggaatttacatacaacctgcttgggtggagaagccattgtcttcagaaaccttggtgtaattgaattgatagttactgttgtgacctgaagttcaccattaaaagggactacccaagcaaaatcatggaattattggttataaaaatgattgttggcacatcctatgcaatatatctaaattgaataatggtaccagataaaattatagatgggaatgaagcttgtgtatcatccattatcatgtgtaatcaataaacaatttaattctcttgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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