2024-04-28 23:29:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054321050 1991 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens pregnancy specific beta-1-glycoprotein 8 (PSG8), transcript variant X2, mRNA. ACCESSION XM_054321050 VERSION XM_054321050.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060943) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1991 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="19" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..1991 /gene="PSG8" /gene_synonym="PSG1" /note="pregnancy specific beta-1-glycoprotein 8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 8 long SRA reads, 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:440533" /db_xref="HGNC:HGNC:9525" /db_xref="MIM:176397" CDS 397..1317 /gene="PSG8" /gene_synonym="PSG1" /codon_start=1 /product="pregnancy-specific beta-1-glycoprotein 8 isoform X2" /protein_id="XP_054177025.1" /db_xref="GeneID:440533" /db_xref="HGNC:HGNC:9525" /db_xref="MIM:176397" /translation="
MSLAREAAEKTYLGRQSKTETKKIPALHAPMETPKPSISSSKLNPREAMEAVSLTCDPETPDASYLWWMNGQSLPMSHRLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLPKPYITINNLKPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDQYGGIRSYPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNPPAQYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGKESSKSMTVKVSDWTLP"
misc_feature 499..765 /gene="PSG8" /gene_synonym="PSG1" /note="Immunoglobulin (Ig)-like domain of human carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) domains 2, 4, and 6, and similar domains; Region: IgI_hCEACAM_2_4_6_like; cd05740" /db_xref="CDD:409402" misc_feature 499..513 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand A [structural motif]; Region: Ig strand A" /db_xref="CDD:409402" misc_feature 520..537 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand A' [structural motif]; Region: Ig strand A'" /db_xref="CDD:409402" misc_feature 550..570 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409402" misc_feature 589..606 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409402" misc_feature 610..621 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand C' [structural motif]; Region: Ig strand C'" /db_xref="CDD:409402" misc_feature 631..645 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand D [structural motif]; Region: Ig strand D" /db_xref="CDD:409402" misc_feature 652..669 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409402" misc_feature 697..723 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409402" misc_feature 733..762 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand G [structural motif]; Region: Ig strand G" /db_xref="CDD:409402" misc_feature 778..1044 /gene="PSG8" /gene_synonym="PSG1" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:448366" misc_feature 829..843 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 868..882 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 934..948 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 976..993 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1021..1032 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand G [structural motif]; Region: Ig strand G" /db_xref="CDD:409353" misc_feature 1069..1296 /gene="PSG8" /gene_synonym="PSG1" /note="Fifth immunoglobulin (Ig)-like domain of the carcinoembryonic antigen (CEA) related cell adhesion molecule 5 (CEACAM5) and similar domains; member of the C2-set IgSF domains; Region: IgC2_CEACAM5-like; cd20948" /db_xref="CDD:409540" misc_feature 1069..1089 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand A [structural motif]; Region: Ig strand A" /db_xref="CDD:409540" misc_feature 1102..1125 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409540" misc_feature 1141..1161 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409540" misc_feature 1168..1185 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand C' [structural motif]; Region: Ig strand C'" /db_xref="CDD:409540" misc_feature 1192..1212 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409540" misc_feature 1219..1254 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409540" misc_feature 1261..1296 /gene="PSG8" /gene_synonym="PSG1" /note="Ig strand G [structural motif]; Region: Ig strand G" /db_xref="CDD:409540" ORIGIN
agaaggaggcaggacagcactgctgagagctgtgctcaggaagcttctggatcctaggctcatctccacagaggagaacacacagacagcagagaccatggggctcctctcagcccctccctgcacacagcgcatcacctggaaggggctcctgctcacaggtcattccttggactctgctctatctttagaggtcactggctcaagtcagccactatgagacacctgggaaaactgcgccaccttgtggctccactgcctgatgactgaactgacctccggacttgactctgttctcccctgtgttatttctgctgaagtacccagtcccaggccaggctttccagtacccaaagggtttaaagacaattggaagttccatcacccatctctaggatgtccttggcaagggaagctgcagagaaaacataccttgggcggcaaagtaagactgaaactaagaagattccagcactgcatgctccaatggagactcccaagccctccatctccagcagcaaattaaaccccagggaggccatggaggctgtgagcttaacctgtgatcctgagactccggacgcaagctacctgtggtggatgaatggtcagagcctccctatgtctcacaggttgcagttgtctgaaaccaacaggaccctctttctattgggtgtcacaaagtacactgcaggaccctatgaatgtgaaatacggaacccagtgagtgccagccgcagtgacccattcaccctgaatctcctcccgaagctgcccaagccctacatcaccatcaacaacttaaaacccagggagaataaggatgtcttaaacttcacctgtgaacctaagagtgagaactacacctacatttggtggctaaatggtcagagcctcccggtcagtcccagggtaaagcgacccattgaaaacaggatcctcattctacccagtgtcacgagaaatgaaacaggaccctatcaatgtgaaataagggaccaatatggtggcatccgcagttacccagtcaccctgaatgtcctctatggtccagacctccccagaatttacccttcattcacctattaccgttcaggagaagtcctctacttgtcctgttctgcggactctaacccaccggcacagtattcttggacaattaatgggaagtttcagctatcaggacaaaagctctttatcccccaaattactacaaagcatagcgggctctatgcttgctctgttcgtaactcagccactggcaaggaaagctccaaatccatgacagtaaaagtctctgactggacattaccctgaattctactagttcctccaattccattttcttccatggaatcgctaagaaaaagacccactctgttccagaagccctataagctggaggtggacaactcaatgtaaatttcatgggaaaacccttgtacctgaagcgtgagccactcagaactcactaaaatgttcgacaccataacaacagatgctcaaactgtaaaccaggacaacaagtggatgacttcacactgtggacagtttttcccaagatgtcagaacaagactccccatcatgatgaggctctcacccctcttaactgtccttgctcatgcctgcctctttcacttggcaggataatgcagtcattagaatttcacatgtagtagcttctgagggtaacaatagagtgtcagatatgtcatctcaacccaaacttttacataacatctcagggggaaatgtggctctctccaccttgcatacaggactcccaatagaaatgaacacagagatattgcccgtgtgtttgcagataagatggtttctatgaagaggtaggaaagctgaaattataatagagtcccctttaaatgcacattctgtggatggctctcgccatttcctaagagatacattgtaaaatgtgacagtaatactgattctagcagaataaaacatgtaccacatttgctaatac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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