2024-05-02 08:11:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054321018 3285 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens luteinizing hormone subunit beta (LHB), transcript variant X1, mRNA. ACCESSION XM_054321018 VERSION XM_054321018.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060943) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3285 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="19" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..3285 /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /note="luteinizing hormone subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 6 long SRA reads, 8 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns" /db_xref="GeneID:3972" /db_xref="HGNC:HGNC:6584" /db_xref="MIM:152780" CDS 2724..3197 /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /codon_start=1 /product="lutropin subunit beta isoform X1" /protein_id="XP_054176993.1" /db_xref="GeneID:3972" /db_xref="HGNC:HGNC:6584" /db_xref="MIM:152780" /translation="
MGRPGLGAAVSDPGEAVSLSQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLLFL"
misc_feature 2844..3164 /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /note="Glycoprotein hormone beta chain homologues; Region: GHB; smart00068" /db_xref="CDD:214502" misc_feature order(2856..2858,2931..2933,2943..2945,3000..3002, 3093..3095,3099..3101) /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /note="cysteine knot motif; other site" /db_xref="CDD:200450" misc_feature order(2877..2879,2886..2888,2928..2969,2997..3002, 3108..3110,3114..3116,3123..3140) /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:200450" misc_feature order(2967..2969,3114..3119,3126..3128,3132..3140) /gene="LHB" /gene_synonym="CGB4; HH23; LSH-B; LSH-beta" /note="receptor binding site [polypeptide binding]; other site" /db_xref="CDD:200450" ORIGIN
aggccaggccagaaggaccagggactacaaactcaccttcagggctcctaagctgctgcggagctagacggcgggctgtgggtggggaggagactagaatattctgagacggggtcaggtgggagttgggagaggtaacgtggagttgctgcccaagatgcagctcagctccagtggccacaccaagacggtttaagaccgagagcggaaccagggaggttgtttttggtggctgggggcttgggtttgagttccttgaacagcagaaggtgcttggatttagggaggtgaggctgggaagggttcgggtatgagaaaggaagctgaagttccctggcgtgggtggcaggaagggctctaaccctggggcggggtgtgagggccgtggccgtcatggctgtcgaggccgaaggagagggattctgaactcgggacccagggcttgggatggggtatgaaatctatgtcttgggtatgcctcctcccccaatcttgctcaggctctaattgcctggacgaagaaccccgagctgtctggccggcctttcacagtatccgaccggggcgtcctggaccgccgccagctctatctgaccacctcggcgcgggactttcggttctatcccaagtaagccgggctctcgctcggcatcgcctcctgcacagcccccgccgtggccggtgcacgccgagcccctgggctggctcccattccctgagccggtggtctcagcctcgacttctgtagcagcaagaaccaaagttcaggcctcagcccctcccttttttttttaagcacccaggagtccttagtgtcacctctcaggaaccgcggtagggacaggaagcctgcacagcggctcgaggggattccggatctgagggcagggcctccttcggtacttgagcccccagatactccttcccaaggaagcgaaagtccccttttacttccctaggatgggaaagctcagtttccaggacgttaagtacctcgaggacccaggaacgcaggcaacgcgtgccgggtcgcgtccttcctaaggggtgctcgcctggaaatgcaggagtttgaatgtgcagactccttagatcccgaggtctgaaactcgtccccaaggatccagctgtatcctcaccatcccgccctgctcccacaggacggagctgtccggatacccccgcaaggactccctgacctactggagcttcgaagagacgccccaggtctggagccacggcccgcagcggccgccctgtccgcgctcctcccggccgccccgaccaccgcgggtccgcgtgccgcgcgtcagcccggtgacctcggccatgccgcaccggggagccctgtctctggctcaggagtcctacagccccctgctgcacccgctccggcggctcgaccgcttctgcccgctggaggcgccctggggcggcccgcactggaagcccctgcggggcatctacagcgtgccgaaagcctacagtaccgagaactccagctatggcagcttgaagccggcgctggtgtgagccgtcagggccagccccaccccagacccgcccccagggccgcgctgccgagcggagctcgggacctccgctcactaggaagggttccggacccagcctgagtcgcactcattacgtctattggcaacgtgggggcgggactagcccagacacccactcagctgcggcatcacggagaggggactaagtccagataatgtccttgcaggctgtggccccgggggcaagacacgcaccctgcgggcgtattaaataatgagttaaatcacctgaaccacacccacttccggggacgctccgggcatcctggcttgagggtagggtgggcggaggtccctaagggagaggtggggctcgggcttaatccctccttgggggcatctgggtcaagtggcttccctggcagcacagtcacggggagaccctctctcactgggcagaagctaagtccgaagcagcgcccctcctgttaggttggactgtggtgcaggaaagcctcaagtggagggttgaggcttcagtccagcacctttctcgggtcatggcctcctcctggctcccaagaccccacaattggcagaggcaggccttcctacaccctactccctgtgcttccagcctcgactagtccctagcactcgacaactgagtctctgaggtcacttcaccgtggtctctgcctcacctctggcgctagaccactgaggggagagggctggggcactctgctgagccactcctgcgcctccctggccatgtgcacctctcgcccccggggggattagtgtccaggttaccccagcatcctatcacctcctggtggccttgccgcccccacaaccccgaggtataaagccagatacacgaggcaggggatgcaccaaggatggagatgctccaggtaagactgcagggcccctgggcaccttccacctccttccaggccatcactggcatgagaaggggcagacccgtgtgagctgtggaaggaggcctctttctggaggggcatgacccccagtaagcttcaggtggggcagttcctgagggtggggatctgaaatgttggggcatctcaggtcctctgggctgtggggtgggctctgaaaggcaggtgtccgggtggtgggtcctgaataggagatgccaggaagggtctctgggtctttgtgggtggtgtaccacgcgggatgggaaggccaggactcggggctgcggtctcagacccgggtgaagcagtgtccttgtcccaggggctgctgctgttgctgctgctgagcatgggcggggcatgggcatccagggagccgcttcggccatggtgccaccccatcaatgccatcctggctgtggagaaggagggctgccccgtgtgcatcaccgtcaacaccaccatctgtgccggctactgccccaccatgatgcgcgtgctgcaggcggtcctgccgcccctgcctcaggtggtgtgcacctaccgtgatgtgcgcttcgagtccatccggctccctggctgcccgcgtggcgtggaccccgtggtctccttccctgtggctctcagctgtcgctgtggaccctgccgccgcagcacctctgactgtgggggtcccaaagaccaccccttgacctgtgaccacccccaactctcaggcctcctcttcctctaaagaccctccccgcagccttccaagtccatcccgactcctggagccctgacaccccgatcctcccacaataaaggcttctcaatccgca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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