2024-04-29 13:00:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054315928 5351 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens homeobox B8 (HOXB8), transcript variant X1, mRNA. ACCESSION XM_054315928 VERSION XM_054315928.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060941) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5351 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="17" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..5351 /gene="HOXB8" /gene_synonym="Hox-2.4; HOX2; HOX2D" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 35 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:3218" /db_xref="HGNC:HGNC:5119" /db_xref="MIM:142963" CDS 3764..4495 /gene="HOXB8" /gene_synonym="Hox-2.4; HOX2; HOX2D" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_054171903.1" /db_xref="GeneID:3218" /db_xref="HGNC:HGNC:5119" /db_xref="MIM:142963" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(4202..4216,4220..4222,4271..4273,4289..4291, 4328..4330,4334..4339,4346..4351,4355..4363,4367..4372) /gene="HOXB8" /gene_synonym="Hox-2.4; HOX2; HOX2D" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(4208..4210,4217..4219,4337..4339,4346..4351, 4358..4360) /gene="HOXB8" /gene_synonym="Hox-2.4; HOX2; HOX2D" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 4211..4369 /gene="HOXB8" /gene_synonym="Hox-2.4; HOX2; HOX2D" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aaaaaaagattgctgagtccaggaggtttctccttacaccctgcagggcaaggtcccctgcagagctctctagaggtggagctgagagccagtcccagaccccaggtcccaagactactggttaaactgatcaagagccttccaacaggagaactggaaaacgagcggggagggaaggaaatgtgggttgtttggagagggcacagggtctggggagcaatgaggtcctgaaacctcctcattgactagagaataggagggaaggtaggtcttcctgcacctcctgggggtagctctcctccctcagccactgagaatgtcaccttagtttggccgctttaaaatatgatgcaagggaggaacacagtaatttccctctgttcttccctgcagtagggtgcctaggtctagacagaggcctccagagggctggaatctctttccttccattcaaagggagccaacgccttagggttctcggcccccacctggggttggaggctccagtttgagccacagggtagcagccttggtctgaggtgggctgggttggtaggggctgagccctgggtgagcacctctgcaaagggtggagaggtcattgagtgtgaagcagaaatgtctcagtagaaaaattcacctcccaaaaggaccccagaattaaactcagtttcaagtggcacatttttgtccctctcagactgagggatttcgccagagcctcttatgaagatcgcagttctcggcagcctgcgcttctcatccaggccttgggattccgcttcggcgggccggcgctcccgagcccgcctacctcaggagcctctccccaacccaagccggcaacactgcggcccgcggagaccctgcgagttggggtagagttgggaacgaagcatggcccgaatgaagggagactgcaagtgaaaaggccaggcctaccctcctccaacgaaaggacgaactgatccaagagacggcgggaggcaggagaaagcggagctccgcatcaggcaggcccggacaggcaccctccaaagagggtttcattagggatgcaaaatgaatctggctttacagctggtgtagaccaggctcctgccccatcctgggctacccaggcccagccggtgctgacagcaaagacagaaggtcggtttctgcctaaagcaaacgctcagcgaggctggaacagaggggagtgctgcgtggtaggggcgagggcgcttggaggggcctctgcctgcagcgtctgggtccccagcccagggctgcttctttaaagacaaacaaaggcgaagatgcggaggctcggaagccggagatggggaaatcagttgtcataaaagagagattcagagagggacaccgccagagtgcgaggcagagagaagccgggagaggaattcaatgccgtgtgcgcagcaataaaataatatgaccgctataaaagtttatagcgtataaatttctgaaggttaagaaactaaacagcagcaaagcaaacagcgaggggaaactttccggagctgagagagccgcagctgggccggggctcccggcctggcgggggaatgggtgggccccgctccggcagccttcaccctcacccgcacagaacacggggctccgggcttccggggcggggggtggcagggggcagagagggagaagagagaagccgggaaagaacactttgttgtcgcaaatgcttcagaaattgcaactggggctcttgtctttgttcttcacaccccctccagaatcaggcgtcggaaacgaggagcctcctgcgcgcgcgcgcgcacacacacacacacacacacacacacacacacacactcaggtccggcggggccagacgtctgggcgcgggcagcctcttgattcttttacagtctcatcctatcctctcaggcctcctctcccccgacaaaaagcccaactgtttctcctcagaatttgaaacaatcgcgtggagtttgaaaactgctcggtccccctttttacacgccataaagggcgcactgctttgcggtctccgctagaaattaggggcaggggtgggaggtgtacgtagaaagaaaaaagcttagggcttcttttttttcctcccctctgttgtgttttttttctattttttagcttatctacacaatttcatgaaccgtttcctgattccgatgcccactccctatccctccccttttactgctagttatgaaagtttctcctgctggccacctctgcggctgctctcccagaaaactggtggagccggtggctgcggcgccttttcgcagagcagccgctagatggcacccttgctccatgtgaaactccctggagcggcagctgcggatgtctgctcccggcaccgcgccttggtcggccctgaatccaggaactgagtgctaccaaaagtcatgaataatttgtacctaataaaaaaaatagggctcgttatggccttacccccattttatagatttcagttatagtagtgttcccccatctcctcaaatggtcaattttctgaattttccccaagaggagggctcagtgattctcacccagttgctgtgttcggtggggcaacaaatgcgtgaaaacggggaataatagtaataataggaataatgggtccaaatccaaaaggagaattgattcgaaacaacgagattttccgtgaaaggaggcgaaaggaatgtccctggatgcgggtcagcaggtcaggtgagaggggctagccggcaaaagaaggtaggatggagaggaagctgcccatcggctggagagaaaatcacgtaagccagcccgagaccccccagtttgtgtgtgtgggggaatggagccatagcttttgtggggattcggagatgcccaaagccggcagggcggcttcgcacgggcgcaagctctggagcctttgtatgagtccagggctgggctgggctcgcgcagggcgacctaggcacggggcaggggctccccagggcagcagggtgcgggaaggctcggatgtggtctctggatgctttgcgcgctcccaaagaatgcgcgttttcccatgggcgcgaaggcgggcgcggcgtcaggacgcaggagctctgttctccctgggttcctgggcttccaggtgagaggtgcggcttcagtgcgccttggccctggccgcaggcaaacctgggggcgccggtcctttcctcattgagcagctggaggtctggactccgggcactttcgttctgagacccgcaccctggttgttcacagccccttgcattccaaatctcctgtgtcctcccggccccgccggatccctgccttccatccgacaaacctgcgccagcaatagatactcccaccccctcaaaatcaccccagctgcagcctctcctctcccccaccaggacttagtgcaaggaggaatttctggcacggtgtagagatgatttagaacaagccattgaatttgtacctcgccgctctctctctcgctcgctctctctcgctctcaccctcgctctgcgttctgtccgggaggagtacgaagaagccaataggatgcggggtctctaatggatgcaaatgatcatgaaaagacagtgcaaaatatgaaacaactcatttgcagggaagtaaatcaccgaaaactgtttatgaactggcatcccttcttcgaaatgtaaagcgaggacctctttaagtggtgcccccaactatagcctccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctaccagcagaacccgtgcgccgtggcgtgccacggggaccccggcaatttctacggctacgacccgctgcaacgccagagcctattcggtgcgcaggatccagacctggtgcagtacgcagactgcaagcttgccgccgccagcggcctgggcgaggaggccgagggctccgagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgtaagcggcgaatcgaggtatcgcacgccctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccagaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggcttcagctgggactgccagggccgcggccgcccgcacgtccgcgggtcccggccgcgccgccgccgcgcgcccctgcccgagagagctctggccccgctagcggggccaggagccgggcctcccaccgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccggggggaaagaaaaggatttaagcaaaggctccctcgccctgtgagggcgagcggcaaaggcccggctgagccccccatgcccctcccctccccgtgtaaaaagcctccttgtgcaattgtcttttttttcctttgaacgtgcttctttgtaatgaccaaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctcccttctctctctctctctcgctcgctcgctctcgctctcgctctctctcgctgcgtcctcatttcccctcccaatcctctctcccctctgcaaccccccagctcgctggctttctctctggcttctctcttttcctcctccacccaccccctttggtttgacaattttgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttacaagtgttcttaggtttactgtgaagagaatgtattctgtatccgtgaattgctttatgggggggagggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcgcctgaaaagggcggaagagttacaataaagtttacaagcgagaacccga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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