LOCUS       XM_054315299            5330 bp    mRNA    linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens distal-less homeobox 4 (DLX4), transcript
            variant X1, mRNA.
ACCESSION   XM_054315299
VERSION     XM_054315299.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060941) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5330
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..5330
                     /gene="DLX4"
                     /gene_synonym="BP1; DLX7; DLX8; DLX9; OFC15"
                     /note="distal-less homeobox 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 3 ESTs, 48 long SRA reads, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:1748"
                     /db_xref="HGNC:HGNC:2917"
                     /db_xref="MIM:601911"
     CDS             3807..4313
                     /gene="DLX4"
                     /gene_synonym="BP1; DLX7; DLX8; DLX9; OFC15"
                     /codon_start=1
                     /product="homeobox protein DLX-4 isoform X1"
                     /protein_id="XP_054171274.1"
                     /db_xref="GeneID:1748"
                     /db_xref="HGNC:HGNC:2917"
                     /db_xref="MIM:601911"
                     /translation="

MKLSVLPPRSLLAPYTVLCCPPDSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGTLPTSGYGNSFGAWYQHHSSDVLASPQMM"

     misc_feature    order(3942..3956,3960..3962,4011..4013,4029..4031,
                     4068..4070,4074..4079,4086..4091,4095..4103,4107..4112)
                     /gene="DLX4"
                     /gene_synonym="BP1; DLX7; DLX8; DLX9; OFC15"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    3948..4109
                     /gene="DLX4"
                     /gene_synonym="BP1; DLX7; DLX8; DLX9; OFC15"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(3948..3950,3957..3959,4077..4079,4086..4091,
                     4098..4100)
                     /gene="DLX4"
                     /gene_synonym="BP1; DLX7; DLX8; DLX9; OFC15"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

gtgccaggcccagggcgccccgcgggggcgtgcgcgccacacgcgtgcggggcaggctgggcgccgggcggcaccctcccagccccggcgtctatttaccaacaaactgccggcgctcagcagcggcgcattccgacgcgctgactaagcggttggcgctggcggtctgcacttgactccccttcaggtccaccgcggctggaccagaatcgacgtgcagatccccgaaatcgggagactgcaaatgcagattccctgcgtctccgcagcccccgggcctctgcccaccacccagctccctgtctcttgggcatccagtctcgccacctctctagcatttctgccattataaccgaggttcctggactgcaccaatcgctctgcaaccccagcacctctcggaggagaccccgaggccgtatggccacctcctgtcttacccctacaccgagccagcgaaccccggagactcctacctgtcctgccagcaacccgcggcgctctctcagcccctctgcggacctgcagagcaccctcaggaactcgaggcaggtaagttcggccgtggaggctcttcccacctctggggttcggctcctgtgcgcccctaaacttctccctcgcctggttggacgcagctagcgggattcaaaccttccttggattccctgggatgtgggggtggggggagggcgaagggatggggcgggagacacggggggaggggcgggggagagttgatctaggtctcctttcaaaaccgacctggtttcgatttgcagttgtgtaaagacaggcgagagggcccccccaaccccccacctggagcagcggggctgtctgtacctactagtaacagaaaactgaagcaatccagatgtggggatgggggcctagcccctttgtcagaatcccccagcccccgtcctgtactccctttctgccccattgtcgcccctctctgcgttagtcttgtctcagaaagcagtgatcaagccaaacactgaaaaacagatcaagtcctggtaggagggctgtagacatcgaggcttattctgggctctgtcctctcccttccctggccttacccgctctcctcagaccaggcctgaccttgactggaagctggcctggcagaatctgggagtaggacccttctatccattgttctgagaaggtagccaaaggctggtaggaaagtcgctcatctctccctgactacctcagccttccagccaaaggagccggccatcgctgtcatctccactctttggctttggggtaggttaggccacagttcccgttgcctggagcaactctgagctcctgagaaagtgctcactggaaggcctcaatgaagcggagaacctggcccgtctttgggatcctgggccttgcagctgagctgacatacaatgtgggtatggcattgcccacaatcccatctgcactggctccagcttagcctccaggtctctggactctctgcctccatctaattgctcaccccctcctcctgcaattgtctttggcagtctcttccaaggaggcacacccattaggtgacttcactggagtcagctcaggaccaagacatcttcctcccttctcctgtggctctgacatgctcacaaaccatcagagccagaagtgaccctaggatttagaagctcaacttctttgatgtatagatgggtaaagcatgtggccaggagcatcgattttagggagcttcctccaacccccccaaaattaactgccttctgtgacagaactgtggctgtctcctgggctgcggagtgtggctggagtgggcgcagttgcagggaggagtagttctagtttttcaaatgaatccctttgactgtcctttagtgtatgctaataggatatgtttgtgtgtgttatgtgtttggggactggggtgggaatatcatgaccttgtcctcaggggaattgctggcagtagggttggtgttgtcagtcttgtctgagatctaaggacaacagagtggagagttcattttctttaaggactttcccccatccagcgaaaaaccacacacacccagatttccttagaatacatttctagcatttctctgctggaactggtgggtttgggcgctctagagtggagggcatgtgatggagagcatggggtcctccttttacttccactctatgtccactcctgccttgggaaaaggtttggctccaagtgagcggtgccaccaccccgttgagccgtagggagcagcgggcctggagggaggccttggggctccatgatcgcgacccgggcagatctcgtaacttgctggaactggggtagggaaaggcagctgtccgggaaggaacttggagggggtctgctgggagagttggggcgcggagggctatgcgaattcagcaaccgggtcggcctcagagactctgcgtccccgctcgaattgcgcagtccacgcagccagagaggcgcgggtgggctctgggctgccagcccagagctgccagcagtggggtcgaggcaggggaggcaggacaggcgcgggcgggagcggaaacccaacggtttttctgggaattggttgaggcagggtcgaggagggaggatctcagaagcccgcagcgcccgaggccacgggtgagggatgcgggggaggtgacggcagctggtgaccgcggctggccgagggcgggtacactgacgtgtggagggtgagcccgactaggggaagaaggtggggggacgcgggcggacagaagccgctctctctcggctcaggtcggctggacagacccgcagggaatgcggcgaacgctgccctaagcgcccgggcattgcggctgctccatccgccctactcctcccattgcctgggacctctgcagcgtccccgtagagccgcgcaggttagggtggctggcttggaagaacagaaacccctcggcccaaccctcccctgtccctcagcattctagggctgggctgtcccgcggccgagattcctggagagctaggcgggccagagctgaccagatcccccgcggcggcaccgcagcgcgatccaggagtggccccgccgggctacgctgcgcgctcttggaacccgggtcaccttccctgccgccggaaccgctctgtgcgcgctgcccaacgaaggaaggggctgccccacgcagacccggcttctgggggtccctggaaacccaggcggccacggtgtggcgggggagacatggtcacttttcctgcagggtgcgcctgagcagaggggcagcccgttacagtaggcgaggccagggcaaacccggggtcactatcagcgctgcgagactggtattcaaggtcctctcagccgggcctctcacccaccccgctggccgcagccggaggctgccacgcggacaccgtctcaagcctctgagcattgctctgagcctctgcctgcaatgtccttcctctgtcatctctaggcctcggctcagccctggacctagcctttctgccccgccctaccccaagctggcgccaccgcccgtggctgaactccgacctcccaccgcaggcgccgcggtaccctggctgtggccctcggcgctttcttcctagggtcacaggacccatacgagtgggagctccctgggagcagaactgcgtcttgtatcacctggcgcggtgaacgtgggggttgaaacgctccacgcggaaggtagagggcaggggccaagggggcgatcctggtggctgcgctttttgctatttgctgccgacggcatgcagacgagatgcaaataagcttatgaaactgtccgtcctaccccctcgctccctcctcgccccctacaccgtgttgtgctgcccaccagactcggagaagccgcggctgtccccggaaccctccgagcggcgccctcaggcccccgccaaaaagctccgcaagccgaggaccatctactccagcctgcagctgcagcacctaaaccagcgtttccagcacacgcagtacctggcgctgcccgagagggcccagctggcagcgcagctcggcctcacccagacccaggtaaagatctggtttcagaacaaacgctccaagtataagaagctcctgaagcagaattctggggggcaggaaggggacttccctgggaggaccttctctgtgtctccctgctccccacccctcccctccctctgggatctacccaaggcagggaccctgcccaccagtggctatggcaacagctttggagcctggtatcagcatcactcctcagatgtcctggcttcgcctcagatgatgtgaatctggggaagggcgggtcaggcccacagccttcctgcaaagcccaggacccaggcagtccacctgcaccccttctgggctgggaggaaaccagctccagatgggttttctctggaggacaagcagttagaggagaaaaaggaatggagcagagcctgtacccctaaccctaacagctaaatcaaggacctcagccttatataatcattgtccccaccactaccatggactggacaccttcactccagctggacaaagactctggagagagagccattggctggagttgagactgtccccagaacccttggtcttgccactcccccactccttcttccctctctccctttctcctctccctgctttcttgaaaaggactgaatcgccactacagcctgggtgcaaaatcagcaagaaacattgagtatttttttttctttgtatgcctttggccttgcacaacccatttgtgagcaaaagcagaagtggaccaccatcagctcccacccacccagcgatttttccttggaggtcagcccgttacccccataactgatttacctacttaccatactgggaggtagaagagatgcagagaaatgtggaatttgtggacctatgggtaatttatgctttcctcctaaaaaaaaaaaaaaaagccctctttcccaccccctccccatctcccctttttgaatagataatggatccaattatccatataattcaataggtatttattgagaggctcccttctattccccatccctaatccctaacgaacccacgggcacacacttttggaaacctggtaaagtaacacttagggggaaatggggacaaactggctctctggattagtgcgggtatagacacccccaaataggtgggtaggcccattgattcagctccttgcagctgtctctgttcaaaggaactgtgcagatttagaacgaattggagcttgagcttcacaccaccagcttccagagattaaagtttgtacaaaacattgca

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