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2024-04-28 23:02:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_017030145            2213 bp    mRNA    linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens inactive glutathione hydrolase 2
            (LOC102724197), transcript variant X10, mRNA.
ACCESSION   XM_017030145
VERSION     XM_017030145.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NT_187386.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017030145.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="22"
                     /map="unlocalized"
     gene            1..2213
                     /gene="LOC102724197"
                     /note="inactive glutathione hydrolase 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:102724197"
     variation       163
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087108638"
     variation       185
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087108687"
     variation       679
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087108925"
     variation       704
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:2087108962"
     variation       747
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087108997"
     variation       806
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087109027"
     variation       889
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087109772"
     variation       890
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087109826"
     variation       891
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087109887"
     variation       912
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087109948"
     CDS             935..2050
                     /gene="LOC102724197"
                     /codon_start=1
                     /product="putative glutathione hydrolase light chain 3
                     isoform X4"
                     /protein_id="XP_016885634.1"
                     /db_xref="GeneID:102724197"
                     /translation="
MCTPGLPWPRMPSSAWRLGGGIVTAEDLNNYCAELIEHPLNISLGDAVLYMPSARLSGPVLALILNILKGYNFSRESVETPEQKGLTYYRIVEAFRFAYAKRTLLGDPKFVDVTEVVRNMTSEFFTAQLRSQISDHTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVCSPVSGILFNNEWTTSALPAFTNEFGAPPSPANFIQPGKQPLLSMCPTIMVGQDGQVRMVVGAAGGTQITTDTALVCVTPFLPGPAHSAQPPSHADHTPMPQAIIYNLWFGYDVKRAVEEPRLHNKLLPNVTTVERNIDQAVTAALETRHHHTQIASTFIAVVQAIVRTAGGWAAASDSRKGGEPAGY"
     misc_feature    <989..2032
                     /gene="LOC102724197"
                     /note="Gamma-glutamyltranspeptidase; Region:
                     G_glu_transpept; cl19223"
                     /db_xref="CDD:450276"
     variation       952
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087110002"
     variation       954
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087110068"
     variation       955
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087110123"
     variation       961
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087110190"
     variation       980
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087110268"
     variation       1199
                     /gene="LOC102724197"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2087122402"
     variation       1232
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2087122496"
     variation       1310
                     /gene="LOC102724197"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1556066369"
     polyA_site      2213
                     /gene="LOC102724197"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ctgccaggtctctctgctcttggtgtctgcatccagggctgggagggggtcaaatgtatcacactatcggccccaggcccaccaagcctggggaggtggccacccttccatgatggcatttggatgttccctgtgtgtggggagggcacggggactccattcatagaccacctctgggacagtgtgtctgcctctgaggtcagacgctctgcactgggacagcgtggagtggagggaaaccaagcttggggctcattggaggggcttgctggcagacaccgccctttgtgggaaactgactgtgggagaggggaaccccaacctctgtcaccacatccctcttccctgttgtcacacctgtcacctgctgccgtagccatgagacttcccaagggtcactgctgccactcactgcacagcctggaagggagtccacaggggacatacagtgagcaagagacctgtgccactcaggcctcctgggggtgtccccagtgcagccatgatgataatcacagctaccattcaccaagccctgcccacagtctaacctactctattcacaacactcccagcagcaaggcaagtgaggtgctgccgtcatccaggctggacagttcagtgatttgcctgaggccccacagcaggagaacgagaaggctgcctgatcagagagtctctgaagaagattctgtggctacaggcttcagcagagtgtgagggagaccccggttatttcctcagctgtttccaccaaatcctcctgtctttcgtggccaacaccccaggcaaggcttggggcccccgtctgctgctggacgcagagccatgaagaagaagttagtggtgctgggcctgctggccgtggtcctggtgctggtcattgtcagcctctgtctctggctgccctcggcctccaaggaacctgacaaccatgtgtacaccagggctgccgtggccgcggatgccaagcagtgcttggagattgggagggggcattgtgacagctgaggacctgaacaactactgtgctgagctgatcgagcacccgctgaacatcagcctgggagacgcggtgctgtacatgcccagtgcgcggctcagcgggcccgtgctggccctcatcctcaacatcctcaaagggtacaacttctcccgggagagcgtggagacccccgagcagaagggcctgacgtactaccgcatcgtagaggctttccggtttgcctacgccaagaggaccctgcttggggaccccaagtttgtggatgtgactgaggtggtccgcaacatgacctctgagttcttcactgcccagctccggtcccagatctctgaccacaccactcacccgatctcctactacaagcccgagttctacacgccggatgacgggggcactgctcacctgtctgtcgtcgcagaggacggcagtgctgtgtccgccaccagcaccatcaacctctactttggctccaaggtctgctccccggtcagtgggatcctgttcaataatgaatggacgacttcagctctcccagcattcaccaatgagtttggggcacccccctcacctgccaatttcatccagccagggaagcagccgctcttgtccatgtgcccgacgatcatggtgggccaggacggccaggtccggatggtggtgggagctgctgggggcacgcagatcaccacagacactgcactggtatgtgtcaccccttttctccctggccctgcccactctgcacagcccccaagccacgctgatcacactcccatgccccaggccatcatctacaacctctggttcggctatgacgtgaagagggccgtggaggagccccggctgcacaacaagcttctgcccaacgtcacgacagtggagagaaacattgaccaggcagtgactgcagccctggagacccggcaccatcacacccagatcgcgtccaccttcatcgctgtggtgcaagccatcgtccgcacggctggtggctgggcagctgcctcggactccaggaaaggcggggaacctgctggctactgagtgctccaggcagacaaggctgacaagcaatccagggacaagatactcaccaggatgaggaagaggactttgggggacgggcttcccctgtgagcagcagagcagcataataaatgaggccactgtgccaggctccaggtggcctccctggcctgtctcccca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]