2024-05-05 00:21:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017030142 2526 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens inactive glutathione hydrolase 2 (LOC102724197), transcript variant X5, mRNA. ACCESSION XM_017030142 VERSION XM_017030142.3 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_187386.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 5, 2022 this sequence version replaced XM_017030142.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001405.40-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2526 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="22" /map="unlocalized" gene 1..2526 /gene="LOC102724197" /note="inactive glutathione hydrolase 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:102724197" variation 296 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:847021" variation 622 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087108997" variation 681 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087109027" variation 764 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087109772" variation 765 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087109826" variation 766 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087109887" variation 787 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087109948" CDS 810..2363 /gene="LOC102724197" /codon_start=1 /product="inactive glutathione hydrolase 2 isoform X1" /protein_id="XP_016885631.1" /db_xref="GeneID:102724197" /translation="
MCTPGLPWPRMPSSAWRLGGKAEVINAREVAPRLAFASMFNSSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAVLENKRTVIEQQPVLCEVFCRDRKVLWEGERLTLPRLADTYEMLAIEGAQAFYNGSLMAQIVKDIQAAGGIVTAEDLNNYCAELIEHPLNISLGDAVLYMPSARLSGPVLALILNILKGYNFSRESVETPEQKGLTYYRIVEAFRFAYAKRTLLGDPKFVDVTEVVRNMTSEFFTAQLRSQISDHTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVCSPVSGILFNNEWTTSALPAFTNEFGAPPSPANFIQPGKQPLLSMCPTIMVGQDGQVRMVVGAAGGTQITTDTALVCVTPFLPGPAHSAQPPSHADHTPMPQAIIYNLWFGYDVKRAVEEPRLHNKLLPNVTTVERNIDQAVTAALETRHHHTQIASTFIAVVQAIVRTAGGWAAASDSRKGGEPAGY"
misc_feature 864..2345 /gene="LOC102724197" /note="Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019" /db_xref="CDD:425991" variation 827 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087110002" variation 829 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087110068" variation 830 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087110123" variation 836 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087110190" variation 855 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087110268" variation 894 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087113433" variation 918 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087113509" variation 971 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087119285" variation 990 /gene="LOC102724197" /replace="c" /replace="g" /db_xref="dbSNP:2087119369" variation 1028 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087119435" variation 1121 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:1556066253" variation 1122 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087119620" variation 1179 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087120283" variation 1204 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:71226280" variation 1512 /gene="LOC102724197" /replace="c" /replace="t" /db_xref="dbSNP:2087122402" variation 1545 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:2087122496" variation 1623 /gene="LOC102724197" /replace="a" /replace="g" /db_xref="dbSNP:1556066369" polyA_site 2526 /gene="LOC102724197" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aattggtggcaaagctgcgcctataactcacctgcgcttttcacaacctgcagtacgtgaccactgccgaaatgaagaggcaggggtgtgccccctcccaccttctgagtggctcaggcacaatcaatgttgagttggcacgaaatgagaaattaaactcaccatgccactttaagaagaacatggagaaggcaggcagaagtgaccgtggagaacagtatctgagccagaaggcaggaggtgtggtgtcagcacagcggcaggtcaccgttcaggaaggacccttgtaccgcacagagggctcccacatcactatctggtgcaatgtgagtggctaccagggaccttctgaacagaatttccagtggtccatttacctgccttcgtcgccagagcgagaggtgcagatcgtcagcaccatggactcttccttcccctatgccatctacacccagcgcgtccgcggagggaagatcttcatagaaagagtccaggggaacccaaccctattgcacatcacagatcttcaggcccgggatgccggggaatatgaatgccacacacccagcaccgagaagcaatactttgggagttaacagtgcaaagatgaacctagtggctgtttccaccaaatcctcctgtctttcgtggccaacaccccaggcaaggcttggggcccccgtctgctgctggacgcagagccatgaagaagaagttagtggtgctgggcctgctggccgtggtcctggtgctggtcattgtcagcctctgtctctggctgccctcggcctccaaggaacctgacaaccatgtgtacaccagggctgccgtggccgcggatgccaagcagtgcttggagattgggaggaaaagctgaggtcatcaatgcccgcgaggtggcccccaggctggcctttgccagcatgttcaacagctcggagcagtcccagaagggagggctgtcggtggcggtgcctggggagatccgaggctatgagctggcacaccagcggcatgggcggctgccctgggctcgcctcttccagcccagcatccagctggcccgccagggcttccccgtgggcaagggcttggcggcagtcctggaaaacaagcggaccgtcatcgagcagcagcctgtcttgtgtgaggtgttctgccgggatagaaaggtgctttgggagggggagagactgaccctgccgcggctggctgacacctacgagatgctggccatcgagggtgcccaggccttctacaacggcagcctcatggcccagattgtgaaggacatccaggcggctgggggcattgtgacagctgaggacctgaacaactactgtgctgagctgatcgagcacccgctgaacatcagcctgggagacgcggtgctgtacatgcccagtgcgcggctcagcgggcccgtgctggccctcatcctcaacatcctcaaagggtacaacttctcccgggagagcgtggagacccccgagcagaagggcctgacgtactaccgcatcgtagaggctttccggtttgcctacgccaagaggaccctgcttggggaccccaagtttgtggatgtgactgaggtggtccgcaacatgacctctgagttcttcactgcccagctccggtcccagatctctgaccacaccactcacccgatctcctactacaagcccgagttctacacgccggatgacgggggcactgctcacctgtctgtcgtcgcagaggacggcagtgctgtgtccgccaccagcaccatcaacctctactttggctccaaggtctgctccccggtcagtgggatcctgttcaataatgaatggacgacttcagctctcccagcattcaccaatgagtttggggcacccccctcacctgccaatttcatccagccagggaagcagccgctcttgtccatgtgcccgacgatcatggtgggccaggacggccaggtccggatggtggtgggagctgctgggggcacgcagatcaccacagacactgcactggtatgtgtcaccccttttctccctggccctgcccactctgcacagcccccaagccacgctgatcacactcccatgccccaggccatcatctacaacctctggttcggctatgacgtgaagagggccgtggaggagccccggctgcacaacaagcttctgcccaacgtcacgacagtggagagaaacattgaccaggcagtgactgcagccctggagacccggcaccatcacacccagatcgcgtccaccttcatcgctgtggtgcaagccatcgtccgcacggctggtggctgggcagctgcctcggactccaggaaaggcggggaacctgctggctactgagtgctccaggcagacaaggctgacaagcaatccagggacaagatactcaccaggatgaggaagaggactttgggggacgggcttcccctgtgagcagcagagcagcataataaatgaggccactgtgccaggctccaggtggcctccctggcctgtctcccca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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