2024-05-06 10:38:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_178045 1626 bp RNA linear PRI 30-SEP-2022 DEFINITION Homo sapiens Zn regulated GTPase metalloprotein activator 1C (ZNG1C), transcript variant 2, non-coding, non-coding RNA. ACCESSION NR_178045 VERSION NR_178045.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1626) AUTHORS Weiss A, Murdoch CC, Edmonds KA, Jordan MR, Monteith AJ, Perera YR, Rodriguez Nassif AM, Petoletti AM, Beavers WN, Munneke MJ, Drury SL, Krystofiak ES, Thalluri K, Wu H, Kruse ARS, DiMarchi RD, Caprioli RM, Spraggins JM, Chazin WJ, Giedroc DP and Skaar EP. TITLE Zn-regulated GTPase metalloprotein activator 1 modulates vertebrate zinc homeostasis JOURNAL Cell 185 (12), 2148-2163 (2022) PUBMED 35584702 REFERENCE 2 (bases 1 to 1626) AUTHORS Haenig C, Atias N, Taylor AK, Mazza A, Schaefer MH, Russ J, Riechers SP, Jain S, Coughlin M, Fontaine JF, Freibaum BD, Brusendorf L, Zenkner M, Porras P, Stroedicke M, Schnoegl S, Arnsburg K, Boeddrich A, Pigazzini L, Heutink P, Taylor JP, Kirstein J, Andrade-Navarro MA, Sharan R and Wanker EE. TITLE Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains JOURNAL Cell Rep 32 (7), 108050 (2020) PUBMED 32814053 REFERENCE 3 (bases 1 to 1626) AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG, Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF, Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC, Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A, Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG, Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S, Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A, Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S, Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V, Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X, Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood MA. TITLE A reference map of the human binary protein interactome JOURNAL Nature 580 (7803), 402-408 (2020) PUBMED 32296183 REFERENCE 4 (bases 1 to 1626) AUTHORS Oh JH, Yang JO, Hahn Y, Kim MR, Byun SS, Jeon YJ, Kim JM, Song KS, Noh SM, Kim S, Yoo HS, Kim YS and Kim NS. TITLE Transcriptome analysis of human gastric cancer JOURNAL Mamm Genome 16 (12), 942-954 (2005) PUBMED 16341674 REFERENCE 5 (bases 1 to 1626) AUTHORS Wong A, Vallender EJ, Heretis K, Ilkin Y, Lahn BT, Martin CL and Ledbetter DH. TITLE Diverse fates of paralogs following segmental duplication of telomeric genes JOURNAL Genomics 84 (2), 239-247 (2004) PUBMED 15233989 REFERENCE 6 (bases 1 to 1626) AUTHORS Fan Y, Newman T, Linardopoulou E and Trask BJ. TITLE Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions JOURNAL Genome Res 12 (11), 1663-1672 (2002) PUBMED 12421752 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CP068269.2. Transcript Variant: This variant (2, non-coding) uses the same exon combination as variant (2, coding) but represents the allele present on the T2T-CHM13v2.0 genome assembly. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). ##Evidence-Data-START## Transcript exon combination :: AK297912.1, SRR14038192.4086838.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-203 CP068269.2 80416505-80416707 204-290 CP068269.2 80419742-80419828 291-387 CP068269.2 80422145-80422241 388-479 CP068269.2 80423337-80423428 480-517 CP068269.2 80433050-80433087 518-564 CP068269.2 80438986-80439032 565-651 CP068269.2 80440752-80440838 652-696 CP068269.2 80443465-80443509 697-753 CP068269.2 80448563-80448619 754-806 CP068269.2 80459670-80459722 807-875 CP068269.2 80471266-80471334 876-941 CP068269.2 80471438-80471503 942-1071 CP068269.2 80472650-80472779 1072-1626 CP068269.2 80473167-80473721 FEATURES Location/Qualifiers source 1..1626 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="9" /map="9q21.11" gene 1..1626 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /note="Zn regulated GTPase metalloprotein activator 1C" /db_xref="GeneID:445571" /db_xref="HGNC:HGNC:18519" /db_xref="MIM:611080" misc_RNA 1..1626 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /product="Zn regulated GTPase metalloprotein activator 1C, transcript variant 2, non-coding" /db_xref="GeneID:445571" /db_xref="HGNC:HGNC:18519" /db_xref="MIM:611080" exon 1..203 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" misc_feature 50..802 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_201453.4" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 204..290 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 291..387 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 388..479 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 480..517 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 518..564 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 565..651 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 652..696 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 697..753 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 754..806 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 807..875 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 876..941 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 942..1071 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" exon 1072..1626 /gene="ZNG1C" /gene_synonym="bA561O23.1; CBWD3" /inference="alignment:Splign:2.1.0" ORIGIN
gtgttggtcccagcggttcagctgaggtagggacgtgctgtaggccggaatgttaccggctgttggatctgtggatgaggaagaggatcctgcggaggaggattgtcctgaattggttcccattgagacgacgcaaagcgaggaggaggaaaagtctggcctcggcgccaagatcccagtcacaattatcaccgggtatttaggtgctgggaagacaacacttctgaactatattttgacagagcaacatagtaaaagagtagcggtcattttaaatgaatctggggaaggaagtgcgctggagaaatccttagctgtcagccaaggtggagagctctatgaagagtggctggaacttagaaacggttgcctctgctgttcagtgaaggacaatggccttagagctattgagaatttgatgcaaaagaaggggaaatttgattacatactgttagagaccactggattagcagaccctggtatcataactattgtggattcaaaatatggattaaaacatttaacagaagagaaacctgatggccttatcaatgaagctactaggcaagttgctttggcagatatcattctcattaataaaacagacttggttccagaagaagatgtaaagaaattaagaacgacaattagatccataaatggactaggacaaatcttagaaacacaaagatcaagagttgatctctctaatgtattagatcttcatgcctttgatagtctctctggaataagtttgcagaaaaaaacttcagcatgtgccaggaacacaacctcaccttgatcagagtattgttacaatcacatttgacgtaccaggaaatgcaaaggaagatcatcttaatatgtttattcagaatcttctgtgggaaaagaatgtgagaaacaaggacaatcactgcatggaggtcataaggctgaagggattggtgtcaatcaaagacaaatcacaacaagtgattgtccagggtgtccatgagctctatgatctggaggagactccagtgagctggaaggatgacactgagagaacaaatcgattggtcctcattggcagaaatttagataaggatatccttaaacagctgtttatagctactgtgacagaaacagaaaagcagtggacaacacatttcaaagaagatcaagtttgtacataacactagaggcatttcttatcaaaaggattggataataaaaataagtttctactgggtatatttcaagcatttatttattactttagttacgaattccaatatactttaaaatggtatttgttttacagcatacataaaatgtagcaaatcagtactgtaaaacatttaacattcatacaattatatataatatccttttttttaaagaatggtatttcacaaaaatatcttttgaaattggctttggagtttacatatactgaacatgaaagtttataataatgatgatacaactttcaacattgtcattttttcttagaacttcagctgattgcagagatataatgattacattgttattaaatttttttaacacaagtaagtgtcaccattttatgacatgaaataaaaggttatgactgttattgatgttgatgttgacgacctg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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