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Previous release (v1)
2024-04-19 10:53:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_146630 813 bp RNA linear PRI 08-NOV-2023
DEFINITION Homo sapiens long intergenic non-protein coding RNA 1980
(LINC01980), long non-coding RNA.
ACCESSION NR_146630 XR_937027 XR_940668
VERSION NR_146630.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 813)
AUTHORS Sheng J, Luo Y, Lv E, Liang H, Tao H, Yu C, Rao D, Sun M, Xia L and
Huang W.
TITLE LINC01980 induced by TGF-beta promotes hepatocellular carcinoma
metastasis via miR-376b-5p/E2F5 axis
JOURNAL Cell Signal 112, 110923 (2023)
PUBMED 37827344
REMARK GeneRIF: LINC01980 induced by TGF-beta promotes hepatocellular
carcinoma metastasis via miR-376b-5p/E2F5 axis.
REFERENCE 2 (bases 1 to 813)
AUTHORS Zhang S, Liang Y, Wu Y, Chen X, Wang K, Li J, Guan X, Xiong G, Yang
K and Bai Y.
TITLE Upregulation of a novel lncRNA LINC01980 promotes tumor growth of
esophageal squamous cell carcinoma
JOURNAL Biochem Biophys Res Commun 513 (1), 73-80 (2019)
PUBMED 30935686
REMARK GeneRIF: LINC01980 is upregulated in human esophageal squamous cell
carcinoma (ESCC) tissues and correlates with poor prognosis.
LINC01980 promotes ESCC cells growth and proliferation in vitro and
in vivo. LINC01980 accelerates cell cycle progression and prevents
cell apoptosis.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC098973.2.
On or before Apr 13, 2017 this sequence version replaced
XR_940668.1, XR_937027.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: AW173098.1, SRR5189667.104265.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968968, SAMEA2148874
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-324 AC098973.2 132111-132434 c
325-411 AC098973.2 127172-127258 c
412-510 AC098973.2 105274-105372 c
511-574 AC098973.2 81258-81321 c
575-813 AC098973.2 69697-69935 c
FEATURES Location/Qualifiers
source 1..813
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="3"
/map="3p24.1"
gene 1..813
/gene="LINC01980"
/note="long intergenic non-protein coding RNA 1980"
/db_xref="GeneID:105377007"
/db_xref="HGNC:HGNC:52808"
ncRNA 1..813
/ncRNA_class="lncRNA"
/gene="LINC01980"
/product="long intergenic non-protein coding RNA 1980"
/db_xref="GeneID:105377007"
/db_xref="HGNC:HGNC:52808"
exon 1..324
/gene="LINC01980"
/inference="alignment:Splign:2.1.0"
variation 2
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:558544756"
variation 3
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1302053878"
variation 5
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1266583236"
variation 6
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:938243789"
variation 10
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1486293656"
variation 11
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1559945378"
variation 12
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1262737091"
variation 13
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1328582888"
variation 14
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1241834623"
variation 17
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060841840"
variation 18
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2060841844"
variation 21
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1258780158"
variation 22
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:142146815"
variation 24
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:917546683"
variation 27
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1210167413"
variation 31
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:1301068944"
variation 33
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1269395415"
variation 36
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060841899"
variation 42
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060841904"
variation 43
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:535363136"
variation 48
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1449733526"
variation 49
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060841923"
variation 50
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:949164939"
variation 55
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1385168749"
variation 56
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:2371117"
variation 58
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060841986"
variation 59
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060841993"
variation 60
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2125425036"
variation 64
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:1252438234"
variation 65
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:902251598"
variation 69
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:575133526"
variation 74
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842024"
variation 75
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1450917051"
variation 76
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:934505691"
variation 80
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1053107834"
variation 81
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842056"
variation 84
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1427152286"
variation 86
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:895884668"
variation 88
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1428909356"
variation 89
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1001135362"
variation 90
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1014789728"
variation 91
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842128"
variation 92
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842137"
variation 95
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:750219091"
variation 96
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:905863934"
variation 97
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1576828588"
variation 98
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:995066639"
variation 103
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842182"
variation 108
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1206094950"
variation 111
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842198"
variation 115
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:151279151"
variation 119..122
/gene="LINC01980"
/replace="aaa"
/replace="aaaa"
/db_xref="dbSNP:1255947197"
variation 119
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842228"
variation 122
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842364"
variation 137
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1453512637"
variation 139
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1228541913"
variation 141
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060842394"
variation 144
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1328569383"
variation 145..149
/gene="LINC01980"
/replace="tttt"
/replace="ttttt"
/db_xref="dbSNP:1164126758"
variation 152
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1297272749"
variation 153
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060842456"
variation 154
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:996060691"
variation 159
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842477"
variation 163
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1363799124"
variation 164
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842493"
variation 166
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1028331180"
variation 168
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:955598753"
variation 169
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1393596350"
variation 171
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842521"
variation 172
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:1008222230"
variation 173
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1016124767"
variation 174
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1171928944"
variation 176
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1462298437"
variation 178
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1324687397"
variation 179
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:961468507"
variation 180
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:563834753"
variation 182
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1449132297"
variation 183
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1376948097"
variation 186
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060842588"
variation 188
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842596"
variation 189
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060842602"
variation 190
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:755229803"
variation 194
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060842616"
variation 195
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:577420657"
variation 196
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:781245099"
variation 199
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:920063352"
variation 200
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:546292044"
variation 203
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1576828632"
variation 204
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:184343803"
variation 209
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:35439826"
variation 212
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842680"
variation 214..219
/gene="LINC01980"
/replace="at"
/replace="atacat"
/db_xref="dbSNP:2060842687"
variation 216
/gene="LINC01980"
/replace="a"
/replace="aa"
/db_xref="dbSNP:2060842698"
variation 217
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125425088"
variation 218
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:920899965"
variation 219
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842703"
variation 222
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060842716"
variation 223
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125425092"
variation 232
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060842725"
variation 233
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:953849561"
variation 235
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1559945428"
variation 240
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2060842744"
variation 241
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060842749"
variation 248
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:2060842754"
variation 252
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1576828645"
variation 253
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060842767"
variation 259
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:978617988"
variation 260..266
/gene="LINC01980"
/replace="aaga"
/replace="aagaaga"
/db_xref="dbSNP:1237423002"
variation 265
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060842787"
variation 267
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:528451331"
variation 272
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:547714056"
variation 273
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:781435253"
variation 278
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:934600669"
variation 288..294
/gene="LINC01980"
/replace="g"
/replace="gctctgg"
/db_xref="dbSNP:2060842826"
variation 289
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842830"
variation 298
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:918174161"
variation 301
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842840"
variation 303
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:756175965"
variation 304
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1332660973"
variation 308
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:2060842863"
variation 310
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1212968748"
variation 311
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060842877"
variation 316
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:917111316"
variation 319
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1166446207"
variation 324
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1559945439"
exon 325..411
/gene="LINC01980"
/inference="alignment:Splign:2.1.0"
variation 326
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1459140355"
variation 327
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060857912"
variation 330
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:2060857918"
variation 332
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1366161983"
variation 334..335
/gene="LINC01980"
/replace="c"
/replace="cc"
/db_xref="dbSNP:2060857931"
variation 336..340
/gene="LINC01980"
/replace="tgt"
/replace="tgtgt"
/db_xref="dbSNP:1163465533"
variation 343
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1357421193"
variation 355
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1176538052"
variation 364
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1465453959"
variation 366
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:186070059"
variation 370
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1267820999"
variation 372
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060857980"
variation 374
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125426721"
variation 375
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1211822704"
variation 376
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:376739792"
variation 379..380
/gene="LINC01980"
/replace="g"
/replace="gg"
/db_xref="dbSNP:772095822"
variation 387
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2060858012"
variation 390
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060858018"
variation 391
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060858027"
variation 392
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:553431743"
variation 396
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1032985242"
variation 397
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1356461599"
variation 403
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:6808561"
variation 405
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:996902119"
variation 406..407
/gene="LINC01980"
/replace="c"
/replace="cc"
/db_xref="dbSNP:2060858092"
variation 408
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1331989342"
variation 409
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060858100"
variation 411
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060858106"
exon 412..510
/gene="LINC01980"
/inference="alignment:Splign:2.1.0"
variation 413
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1576836773"
variation 414
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:2060927377"
variation 416
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060927383"
variation 420
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1477881220"
variation 421
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:1462426664"
variation 423
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1428190604"
variation 424
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060927412"
variation 425
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1193855769"
variation 430..436
/gene="LINC01980"
/replace="agaga"
/replace="agagaga"
/db_xref="dbSNP:2060927427"
variation 431
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1478517536"
variation 432
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2125342441"
variation 433
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:868625779"
variation 434
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1260493213"
variation 436..438
/gene="LINC01980"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1644965430"
variation 440
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2060927459"
variation 441
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1191823777"
variation 444
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1181385542"
variation 445
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060927492"
variation 447..448
/gene="LINC01980"
/replace="a"
/replace="aa"
/db_xref="dbSNP:2060927497"
variation 449
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060927507"
variation 450
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:967780804"
variation 452
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:182860962"
variation 457
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:981500944"
variation 467
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1198541802"
variation 468
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1322498130"
variation 469
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1576836790"
variation 470
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1236469299"
variation 471
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2060927563"
variation 475
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060927571"
variation 480
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2060927578"
variation 481
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060927583"
variation 483
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:187256085"
variation 488
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1576836794"
variation 491
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:11922228"
variation 492
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:958966105"
variation 499
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2060927624"
variation 500
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1055980084"
variation 509
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1448809982"
variation 510
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2060927640"
exon 511..574
/gene="LINC01980"
/inference="alignment:Splign:2.1.0"
variation 511
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2061003952"
variation 512
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1559956547"
variation 515
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:987111190"
variation 516..517
/gene="LINC01980"
/replace=""
/replace="ag"
/db_xref="dbSNP:1559956551"
variation 517..520
/gene="LINC01980"
/replace="ggg"
/replace="gggg"
/db_xref="dbSNP:2061003987"
variation 518
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:769413047"
variation 519
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2061004009"
variation 520
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1188302486"
variation 536
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061004021"
variation 539
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:532237975"
variation 540
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1249403187"
variation 545
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1200299188"
variation 546
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:2061004055"
variation 548
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2061004059"
variation 552
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2061004069"
variation 555
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:552254287"
variation 558
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1318965927"
variation 560
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061004086"
variation 562
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061004091"
variation 566
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1423985001"
variation 573
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:565677040"
variation 574
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:62622826"
exon 575..813
/gene="LINC01980"
/inference="alignment:Splign:2.1.0"
variation 575
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:937362366"
variation 581
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:145596841"
variation 589
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061042081"
variation 590
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1299891500"
variation 592
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:888065054"
variation 595
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:904350331"
variation 596
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2061042101"
variation 597
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1402666468"
variation 599..605
/gene="LINC01980"
/replace="agaa"
/replace="agaagaa"
/db_xref="dbSNP:2061042127"
variation 599
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1365138265"
variation 602
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1316281471"
variation 606
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042142"
variation 607
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061042147"
variation 608
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042156"
variation 609
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061042164"
variation 623
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125351385"
variation 627
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042171"
variation 628
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1000100110"
variation 629
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1454927552"
variation 630
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:183900306"
variation 633
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1302163632"
variation 637
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:527384682"
variation 641
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042216"
variation 643
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1413538916"
variation 646
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1396647292"
variation 651
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:547473804"
variation 652..660
/gene="LINC01980"
/replace="acacaca"
/replace="acacacaca"
/db_xref="dbSNP:2061042242"
variation 655
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:9968142"
variation 659
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125351396"
variation 660
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2125351397"
variation 663
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1389497410"
variation 666
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2061042264"
variation 669
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042273"
variation 677
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1277322804"
variation 678
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1473693047"
variation 679
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2125351403"
variation 680
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2061042289"
variation 684
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1559958872"
variation 685
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:536973210"
variation 690
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1235506439"
variation 706
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1349841376"
variation 708
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1576847360"
variation 709
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:2304723"
variation 710
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042380"
variation 715
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:755660670"
variation 716
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2061042391"
variation 723
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:1203133916"
variation 724
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:994294215"
variation 726
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1576847374"
variation 732
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1293141048"
variation 733
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:2061042424"
variation 734
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1230517222"
variation 735
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:2887957"
variation 736
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:2061042465"
variation 738
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:983537255"
variation 741
/gene="LINC01980"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1357033643"
variation 743
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:955180228"
variation 745
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:538689050"
variation 746
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:538685771"
variation 747
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:558992319"
variation 750..757
/gene="LINC01980"
/replace="aac"
/replace="aactgaac"
/db_xref="dbSNP:2061042534"
variation 758..760
/gene="LINC01980"
/replace="c"
/replace="ctc"
/db_xref="dbSNP:2061042550"
variation 758
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:957295389"
variation 761
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:1164194407"
variation 763
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1334006850"
variation 764
/gene="LINC01980"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1576847395"
variation 767
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:1411406163"
variation 771
/gene="LINC01980"
/replace="a"
/replace="c"
/db_xref="dbSNP:1181099379"
variation 780
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:989967511"
variation 782
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:973661783"
variation 783..785
/gene="LINC01980"
/replace="t"
/replace="tat"
/db_xref="dbSNP:1180198817"
variation 783
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:2061042603"
variation 785
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:2061042613"
variation 787
/gene="LINC01980"
/replace="a"
/replace="g"
/db_xref="dbSNP:927492091"
variation 793
/gene="LINC01980"
/replace="a"
/replace="t"
/db_xref="dbSNP:1231296420"
variation 795
/gene="LINC01980"
/replace="g"
/replace="t"
/db_xref="dbSNP:2061042637"
variation 796
/gene="LINC01980"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1292563795"
variation 800
/gene="LINC01980"
/replace="c"
/replace="g"
/db_xref="dbSNP:937010179"
variation 807
/gene="LINC01980"
/replace="c"
/replace="t"
/db_xref="dbSNP:992521387"
ORIGIN
gcgccgggatgcgctctcctcttctcatttgccaatttattgcagatccctcctcaaaaaagttttgggactaactcagccccatggagatcaaggtgaattagaaaaacaacaaaacaaaacaagattcattttaacatctcatttttctatctccaactttccctcccctcctcccaccccaggaagaaaagactacgtttgtttctggtgatacattcattgtaggtgggtgggtgacttctagaagaggaaaatcaagaagatttggagaaggagtcttggaagctctggtgaagttttccaaaactgggaaggacagagtctgctcagcctgtgttagtggagaagagggaaggaaactggctggaggccgctggacccacagaggacaatagacaatctcctgctgatgcccactggatccaaagagagaaactctatagaattatgatctaggtttgactgactcctggcaagaagccctacccgccagccaatttggatgaggtcacaggggtcatccatctttccttctatgtgactggtttgctcttgcatatcatgttttccgctcttatgctccagatccatcatgagaagaacatgccctggattcctgctatccctttagccatggctccaaaattaacacacacaaggaagacctgaggtcaatccacagcctggattcaagtcacctaatacataggagaatcagagctacccagccacactcaatctacgttaactgaacctcagctgacctgcagatttatgagtatgagaataaaggcttgttaatgtatatca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]