ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-04-26 02:51:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_145798 147 bp RNA linear PRI 11-SEP-2020
DEFINITION Homo sapiens small nucleolar RNA, H/ACA box 116 (SNORA116), small
nucleolar RNA.
ACCESSION NR_145798
VERSION NR_145798.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 147)
AUTHORS Jorjani H, Kehr S, Jedlinski DJ, Gumienny R, Hertel J, Stadler PF,
Zavolan M and Gruber AR.
TITLE An updated human snoRNAome
JOURNAL Nucleic Acids Res. 44 (11), 5068-5082 (2016)
PUBMED 27174936
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL360169.17.
Sequence Note: This RefSeq record was created from genomic sequence
data. The genomic coordinates used for the transcript record were
based on predicted data.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-147 AL360169.17 153916-154062 c
FEATURES Location/Qualifiers
source 1..147
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6q25.3"
gene 1..147
/gene="SNORA116"
/note="small nucleolar RNA, H/ACA box 116"
/db_xref="GeneID:109623462"
/db_xref="HGNC:HGNC:51854"
ncRNA 1..147
/ncRNA_class="snoRNA"
/gene="SNORA116"
/product="small nucleolar RNA, H/ACA box 116"
/db_xref="GeneID:109623462"
/db_xref="HGNC:HGNC:51854"
exon 1..147
/gene="SNORA116"
/inference="alignment:Splign:2.1.0"
variation 6
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779671932"
variation 8
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1298581778"
variation 11
/gene="SNORA116"
/replace="g"
/replace="t"
/db_xref="dbSNP:1484529843"
variation 14
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1005298872"
variation 17..23
/gene="SNORA116"
/replace="aaga"
/replace="aagaaga"
/db_xref="dbSNP:1779672133"
variation 18
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779672194"
variation 21
/gene="SNORA116"
/replace="a"
/replace="t"
/db_xref="dbSNP:1205596455"
variation 23
/gene="SNORA116"
/replace="a"
/replace="t"
/db_xref="dbSNP:1349929002"
variation 27..28
/gene="SNORA116"
/replace=""
/replace="c"
/db_xref="dbSNP:35108892"
variation 31
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779672398"
variation 37
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:978241827"
variation 44
/gene="SNORA116"
/replace="a"
/replace="c"
/db_xref="dbSNP:1779672511"
variation 47
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779672566"
variation 48
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1401244977"
variation 50
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779672673"
variation 51
/gene="SNORA116"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1016660307"
variation 53
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1583746794"
variation 55
/gene="SNORA116"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1395612092"
variation 56
/gene="SNORA116"
/replace="a"
/replace="c"
/db_xref="dbSNP:963832484"
variation 57
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1339029049"
variation 62
/gene="SNORA116"
/replace="g"
/replace="t"
/db_xref="dbSNP:549882917"
variation 64
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779673108"
variation 66
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779673167"
variation 71
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:2128487940"
variation 74
/gene="SNORA116"
/replace="a"
/replace="c"
/db_xref="dbSNP:1583746824"
variation 76..77
/gene="SNORA116"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:1779673269"
variation 78
/gene="SNORA116"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:570164318"
variation 79
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:766730932"
variation 83
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:989882613"
variation 85
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779673649"
variation 88
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779673695"
variation 89
/gene="SNORA116"
/replace="c"
/replace="g"
/db_xref="dbSNP:1779673749"
variation 91
/gene="SNORA116"
/replace="a"
/replace="c"
/db_xref="dbSNP:1779673934"
variation 92
/gene="SNORA116"
/replace="a"
/replace="t"
/db_xref="dbSNP:1779673998"
variation 93
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779674057"
variation 94
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779674097"
variation 102
/gene="SNORA116"
/replace="g"
/replace="t"
/db_xref="dbSNP:1779674159"
variation 103
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1157017668"
variation 106
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:538782322"
variation 107
/gene="SNORA116"
/replace="c"
/replace="g"
/db_xref="dbSNP:1779674315"
variation 108
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:942598159"
variation 113
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779674433"
variation 117
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1164431405"
variation 121
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1474361596"
variation 122
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1779674534"
variation 125
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:1779674591"
variation 130
/gene="SNORA116"
/replace="g"
/replace="t"
/db_xref="dbSNP:1779674651"
variation 137
/gene="SNORA116"
/replace="c"
/replace="t"
/db_xref="dbSNP:1374560479"
variation 142
/gene="SNORA116"
/replace="c"
/replace="g"
/db_xref="dbSNP:1193681046"
variation 145
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:988055792"
variation 147
/gene="SNORA116"
/replace="a"
/replace="g"
/db_xref="dbSNP:913728035"
ORIGIN
cttttctcagtggtgcaagaagattaagccacattctggctttagagaggcatttctgagagagatgaaggacacttcgttccccagccccaacctaagcatgtgactgtactcaccttgtcagatgctgttggaacctggctgaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]