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Previous release (v1)
2024-04-28 21:51:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_136311 365 bp RNA linear PRI 08-SEP-2020
DEFINITION Homo sapiens uncharacterized LOC105374820 (LOC105374820),
transcript variant 2, long non-coding RNA.
ACCESSION NR_136311
VERSION NR_136311.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC092660.2.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMEA1968968,
SAMEA2148093 [ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-67 AC092660.2 39224-39290
68-148 AC092660.2 46313-46393
149-365 AC092660.2 59565-59781
FEATURES Location/Qualifiers
source 1..365
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="2"
/map="2p12"
gene 1..365
/gene="LOC105374820"
/note="uncharacterized LOC105374820"
/db_xref="GeneID:105374820"
ncRNA 1..365
/ncRNA_class="lncRNA"
/gene="LOC105374820"
/product="uncharacterized LOC105374820, transcript variant
2"
/db_xref="GeneID:105374820"
exon 1..67
/gene="LOC105374820"
/inference="alignment:Splign:2.1.0"
variation 6
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1273845946"
variation 7
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1397943972"
variation 8
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671325800"
variation 12
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671325828"
variation 13
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671325855"
variation 15
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671325888"
variation 19..21
/gene="LOC105374820"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:1671325915"
variation 20
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671325938"
variation 24
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671325957"
variation 25
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671325991"
variation 26
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:2103940309"
variation 31
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1365288457"
variation 32
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:998200339"
variation 33
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1456953337"
variation 36
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1051057447"
variation 37
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:892432954"
variation 39
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671326170"
variation 42
/gene="LOC105374820"
/replace=""
/replace="g"
/db_xref="dbSNP:1328304878"
variation 43..50
/gene="LOC105374820"
/replace="aaaaaaa"
/replace="aaaaaaaa"
/replace="aaaaaaaaa"
/db_xref="dbSNP:1558576995"
variation 43
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1022969170"
variation 46
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:529550311"
variation 47
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1671326336"
variation 49
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1671326366"
variation 50
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1423586252"
variation 52
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671326417"
variation 55
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1191871629"
variation 56
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:2103940356"
variation 59
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671326458"
variation 61
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1671326496"
variation 64
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1572973936"
variation 67
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671326545"
exon 68..148
/gene="LOC105374820"
/inference="alignment:Splign:2.1.0"
variation 68
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671415047"
variation 70
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:550617966"
variation 73
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1042566765"
variation 77
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:763310860"
variation 80
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:769065711"
variation 81
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1242182541"
variation 82
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1191936743"
variation 83
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671415213"
variation 85..90
/gene="LOC105374820"
/replace=""
/replace="gactac"
/db_xref="dbSNP:2103946506"
variation 86
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1671415246"
variation 89
/gene="LOC105374820"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1017300167"
variation 91
/gene="LOC105374820"
/replace=""
/replace="a"
/db_xref="dbSNP:1671415315"
variation 93
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1223920809"
variation 95..105
/gene="LOC105374820"
/replace=""
/replace="ttccagtagaa"
/db_xref="dbSNP:2103946518"
variation 99
/gene="LOC105374820"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:775558947"
variation 100
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671415411"
variation 105
/gene="LOC105374820"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1572976472"
variation 106
/gene="LOC105374820"
/replace=""
/replace="c"
/db_xref="dbSNP:1671415473"
variation 110
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:2103946528"
variation 113
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1216533120"
variation 121
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:995116670"
variation 126
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:2103946537"
variation 130
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671415556"
variation 132
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1362998066"
variation 135..137
/gene="LOC105374820"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1671415764"
variation 136
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1572976478"
variation 138
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:886816757"
variation 139
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:184535182"
variation 141
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671415887"
variation 142
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671415913"
variation 145
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1003829152"
exon 149..365
/gene="LOC105374820"
/inference="alignment:Splign:2.1.0"
variation 153
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671596341"
variation 155
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1671596373"
variation 158
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1390524227"
variation 159
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1442211491"
variation 165
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1293611459"
variation 167
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1558582320"
variation 170
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:983060786"
variation 173
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671596707"
variation 174
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1396577625"
variation 175
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671596766"
variation 176
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671596795"
variation 178
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671596831"
variation 183
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1047165811"
variation 184
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1487838507"
variation 187
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671596924"
variation 188
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1017171066"
variation 189..194
/gene="LOC105374820"
/replace="gagaga"
/replace="gagagaga"
/db_xref="dbSNP:1207202088"
variation 190
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1384738845"
variation 193
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1558582335"
variation 195
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:2103959140"
variation 197
/gene="LOC105374820"
/replace="t"
/replace="tt"
/db_xref="dbSNP:1274342431"
variation 200
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1308759940"
variation 203
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597164"
variation 206
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597195"
variation 207
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671597241"
variation 209..227
/gene="LOC105374820"
/replace="agt"
/replace="agtggaacagatgagaagt"
/db_xref="dbSNP:1671597282"
variation 210
/gene="LOC105374820"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1329420747"
variation 214
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1350322227"
variation 216
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:962888416"
variation 220
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:2103959167"
variation 221
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:975539132"
variation 223
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:191645297"
variation 225
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:146529776"
variation 232
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:570878676"
variation 233
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597624"
variation 237..243
/gene="LOC105374820"
/replace="tatt"
/replace="tattatt"
/db_xref="dbSNP:1281388773"
variation 239
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:539956063"
variation 240
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671597693"
variation 242
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597723"
variation 243
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597756"
variation 245
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671597784"
variation 249
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:2103959206"
variation 250
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1336860876"
variation 258
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1046652763"
variation 259
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1307171767"
variation 260
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:770264329"
variation 261..266
/gene="LOC105374820"
/replace="aa"
/replace="aaagaa"
/db_xref="dbSNP:1671598006"
variation 261
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671597972"
variation 263
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1427505498"
variation 264
/gene="LOC105374820"
/replace="c"
/replace="g"
/db_xref="dbSNP:1671598067"
variation 265..271
/gene="LOC105374820"
/replace="aaca"
/replace="aacaaca"
/db_xref="dbSNP:1671598094"
variation 267
/gene="LOC105374820"
/replace=""
/replace="c"
/db_xref="dbSNP:1671598170"
variation 267
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671598137"
variation 270
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:775701507"
variation 273
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1671598244"
variation 276
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:987232550"
variation 278
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1671598316"
variation 285
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:568799863"
variation 286
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1214199489"
variation 289
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:905470220"
variation 290
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1002361876"
variation 292
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:553027104"
variation 296
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:2103959265"
variation 299
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:764187639"
variation 305
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1671598597"
variation 307
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:75736379"
variation 310
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671598715"
variation 323
/gene="LOC105374820"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1178996071"
variation 327
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1251601196"
variation 328
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1009616872"
variation 330
/gene="LOC105374820"
/replace="a"
/replace="c"
/db_xref="dbSNP:1310715695"
variation 332
/gene="LOC105374820"
/replace="g"
/replace="t"
/db_xref="dbSNP:1671599129"
variation 339
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1472381780"
variation 342
/gene="LOC105374820"
/replace="a"
/replace="t"
/db_xref="dbSNP:1671599197"
variation 345
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1671599219"
variation 348
/gene="LOC105374820"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:535447736"
variation 350
/gene="LOC105374820"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:555647389"
variation 351
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:140884318"
variation 352
/gene="LOC105374820"
/replace="a"
/replace="g"
/db_xref="dbSNP:1420392235"
variation 356
/gene="LOC105374820"
/replace="c"
/replace="t"
/db_xref="dbSNP:1671599486"
ORIGIN
aaagtgggcagattgacatttctggcagaaccctaggagcagaaaaaaaatctgaaaaacaaataagcacctgtgatgccctgtgactacagagttccagtagaactataatctgtggaagttcaagaagacttaaagcaggtacaaaagcagccagagtcactcctatctccattgcttacatgagtgagagatgtgagtattgcccagtggaacagatgagaagtaatcacagatattattgcaaaaatcagaaagtcaaagaacaacagaactcatttgactgtatggggcctaagaacttaccagtgagagagaaatgcacagcacagtatcatatttaaatacaatgagctagcaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]