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Previous release (v1)
2024-04-17 02:38:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_130179 510 bp RNA linear PRI 11-SEP-2020
DEFINITION Homo sapiens PAGE family member 5 pseudogene (LOC100421746),
non-coding RNA.
ACCESSION NR_130179
VERSION NR_130179.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL158819.14.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
Transcript exon combination :: AI651025.1, BE551616.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968968, SAMEA2148093
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-65 AL158819.14 101118-101182
66-157 AL158819.14 102404-102495
158-266 AL158819.14 102893-103001
267-392 AL158819.14 103750-103875
393-510 AL158819.14 109699-109816
FEATURES Location/Qualifiers
source 1..510
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xp11.21"
gene 1..510
/gene="LOC100421746"
/note="PAGE family member 5 pseudogene"
/pseudo
/db_xref="GeneID:100421746"
misc_RNA 1..510
/gene="LOC100421746"
/product="PAGE family member 5 pseudogene"
/pseudo
/db_xref="GeneID:100421746"
exon 1..65
/gene="LOC100421746"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 1
/gene="LOC100421746"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:759092364"
variation 2
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938520007"
variation 3
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1319032591"
variation 5
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938520073"
variation 8
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938520120"
variation 10
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:968429010"
variation 14
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:978486015"
variation 15
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1179139501"
variation 18
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938520334"
variation 19
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:180930448"
variation 22
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:777863363"
variation 25
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:924270664"
variation 27
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:759678698"
variation 30
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1185599162"
variation 31
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1474211380"
variation 33
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:2146577087"
variation 40
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938520683"
variation 43..49
/gene="LOC100421746"
/replace="tct"
/replace="tctct"
/replace="tctctct"
/db_xref="dbSNP:781249821"
variation 43
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1243408334"
variation 44
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:934305433"
variation 46
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938520864"
variation 48
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:187263600"
variation 52
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1460434093"
variation 60
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:993163244"
variation 62
/gene="LOC100421746"
/replace=""
/replace="g"
/db_xref="dbSNP:1938521053"
variation 64
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:144762628"
variation 65
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:948553825"
exon 66..157
/gene="LOC100421746"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 73
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:891577236"
variation 75
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:112997135"
variation 76
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938534835"
variation 77
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938534857"
variation 78
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1330293858"
variation 82
/gene="LOC100421746"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1447312448"
variation 84
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938534936"
variation 86
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938534967"
variation 89
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938534999"
variation 92
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1195096297"
variation 95
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1302867833"
variation 96
/gene="LOC100421746"
/replace=""
/replace="g"
/db_xref="dbSNP:1938535105"
variation 96
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:926007577"
variation 100
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1386855515"
variation 103
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938535150"
variation 106
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938535163"
variation 107
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938535190"
variation 109
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938535219"
variation 110
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938535249"
variation 116
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1363762291"
variation 121..122
/gene="LOC100421746"
/replace=""
/replace="ag"
/db_xref="dbSNP:1250950494"
variation 125
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1140760"
variation 126..127
/gene="LOC100421746"
/replace=""
/replace="aa"
/db_xref="dbSNP:758482160"
variation 127..130
/gene="LOC100421746"
/replace="ag"
/replace="agag"
/db_xref="dbSNP:1938535388"
variation 131
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938535409"
variation 132
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1601969571"
variation 136
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938535452"
variation 137
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938535491"
variation 150
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1938535519"
variation 156
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1664324668"
exon 158..266
/gene="LOC100421746"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 160
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1208147060"
variation 163
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938548802"
variation 164
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1348768791"
variation 165
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1330970548"
variation 169
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1256245371"
variation 171
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:754499740"
variation 173
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938549002"
variation 175
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:962643236"
variation 177..181
/gene="LOC100421746"
/replace="aaaa"
/replace="aaaaa"
/db_xref="dbSNP:1938549077"
variation 179
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:779963055"
variation 181
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1416406919"
variation 182
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938549194"
variation 193
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1463371492"
variation 196
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1063715"
variation 197
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1418985477"
variation 201
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1165273296"
variation 202
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:973013959"
variation 203
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938549407"
variation 206
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938549451"
variation 208
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938549493"
variation 210
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:2146578306"
variation 212
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1230755903"
variation 218
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:918425884"
variation 223
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938549609"
variation 228
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:751722081"
variation 229
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938549696"
variation 230
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938549744"
variation 232
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:2146578331"
variation 235
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938549776"
variation 238
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1170300280"
variation 239
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1374174921"
variation 249
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:756003674"
variation 250
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1273564588"
variation 259
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1938550002"
variation 261
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938550060"
variation 265
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938550086"
exon 267..392
/gene="LOC100421746"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 268
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938557008"
variation 270
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938557040"
variation 271
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1368718899"
variation 274
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:755102804"
variation 275
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1459691223"
variation 289
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938557201"
variation 295
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1938557228"
variation 297
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1383925693"
variation 300
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1325093569"
variation 302
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1455528849"
variation 304
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938557368"
variation 309
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1395086851"
variation 310
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1438584185"
variation 312
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:777526117"
variation 314
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938557493"
variation 316
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1452608186"
variation 321
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:753857535"
variation 322
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:757302498"
variation 323
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1449295120"
variation 327
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938557600"
variation 328
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1260074614"
variation 334
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:758330520"
variation 341
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1223926872"
variation 342
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938557709"
variation 349
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1289846878"
variation 350
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1486647436"
variation 352
/gene="LOC100421746"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1260891746"
variation 353
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:186262673"
variation 354..357
/gene="LOC100421746"
/replace="ct"
/replace="ctct"
/db_xref="dbSNP:1331605605"
variation 354
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938557852"
variation 356
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1938557900"
variation 358
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938557932"
variation 361
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938557957"
variation 367
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:937105783"
variation 368
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1038489542"
variation 369
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938558042"
variation 373
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1938558069"
variation 376
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:898170329"
variation 377
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1234898952"
variation 381
/gene="LOC100421746"
/replace="g"
/replace="t"
/db_xref="dbSNP:994212252"
variation 383
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:745713736"
variation 384
/gene="LOC100421746"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938558222"
variation 386
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1293170813"
exon 393..510
/gene="LOC100421746"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 395
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1024226385"
variation 397
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:982891816"
variation 400
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1322600445"
variation 402
/gene="LOC100421746"
/replace="a"
/replace="t"
/db_xref="dbSNP:1601971871"
variation 407
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938602298"
variation 409
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1938602320"
variation 416
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938602344"
variation 417
/gene="LOC100421746"
/replace="a"
/replace="c"
/db_xref="dbSNP:1283802794"
variation 418
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:1938602403"
variation 430
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938602434"
variation 431
/gene="LOC100421746"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1938602466"
variation 436..438
/gene="LOC100421746"
/replace="aaa"
/replace="aaaa"
/db_xref="dbSNP:1938602522"
variation 436
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1376148027"
variation 444
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1331324961"
variation 451..455
/gene="LOC100421746"
/replace="tt"
/replace="ttctt"
/db_xref="dbSNP:1938602592"
variation 451
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:908243988"
variation 476
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938602620"
variation 477
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:760404265"
variation 479
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938602654"
variation 484
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:938440330"
variation 485
/gene="LOC100421746"
/replace="c"
/replace="t"
/db_xref="dbSNP:969549818"
variation 490
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1295694953"
variation 493
/gene="LOC100421746"
/replace="c"
/replace="g"
/db_xref="dbSNP:1601971880"
variation 508
/gene="LOC100421746"
/replace="a"
/replace="g"
/db_xref="dbSNP:1938602790"
ORIGIN
agaagaggtagtatcttcattctttccaccatcttgattctttctctctgactgaggctcagccgtgggaaatatgagtgagcatgtaagaacaagatcccaatcctcagaaagaggaaatgactaagagtcttcccagccagttgtatctgtgattgtccagcagcccactgaggaaaaacgtcaagaagaggagccaccaactgaaaatcagggtattgcacctactggggagatcgaaaatgaagcggcacctgcccttcaaggacctgatgtggaagcttttcaacaggaactggctctgcttaagatagaggatgcacctggagatggtcctgatgtcagggaggggactctgcccactttcgatcccactaaagtgctggaagcaggtaatgggcaaccataggtttaaaccaagacaaatgaagactgaaaccaagaatgttgttcttatgctggaaatttgactgctaacattctcttaataaagttttacagttttctgca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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