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Previous release (v1)
2024-04-27 22:43:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_120532 473 bp RNA linear PRI 06-SEP-2020
DEFINITION Homo sapiens uncharacterized LOC101929427 (LOC101929427),
transcript variant 1, long non-coding RNA.
ACCESSION NR_120532
VERSION NR_120532.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AP000741.4 and AP001783.4.
Transcript Variant: This variant (1) represents the longer
transcript.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
Transcript exon combination :: BX333503.2, AA573248.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2144333, SAMEA2467146
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-152 AP000741.4 150965-151116
153-473 AP001783.4 26826-27146
FEATURES Location/Qualifiers
source 1..473
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="11"
/map="11q24.2"
gene 1..473
/gene="LOC101929427"
/note="uncharacterized LOC101929427"
/db_xref="GeneID:101929427"
ncRNA 1..473
/ncRNA_class="lncRNA"
/gene="LOC101929427"
/product="uncharacterized LOC101929427, transcript variant
1"
/db_xref="GeneID:101929427"
exon 1..152
/gene="LOC101929427"
/inference="alignment:Splign:2.1.0"
variation 1
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944955725"
variation 2
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1367616886"
variation 3
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1292450300"
variation 4
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1408611139"
variation 10
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944956419"
variation 11
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:569786414"
variation 12
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1307491389"
variation 16
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1944956813"
variation 17
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1565621747"
variation 19..21
/gene="LOC101929427"
/replace=""
/replace="aga"
/db_xref="dbSNP:1944957066"
variation 20
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:965984356"
variation 22
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1944957302"
variation 23
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:2134977509"
variation 24
/gene="LOC101929427"
/replace="c"
/replace="g"
/db_xref="dbSNP:986815679"
variation 25
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1158991157"
variation 28
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1281633475"
variation 32
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944957832"
variation 36
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944958004"
variation 40
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944958135"
variation 42
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1418917922"
variation 43
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:536000709"
variation 46
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1944958517"
variation 52
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1232264120"
variation 55
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:911255361"
variation 56..82
/gene="LOC101929427"
/replace=""
/replace="gtgaaccaacaacaaaaggaccagcca"
/db_xref="dbSNP:1944959305"
variation 56..58
/gene="LOC101929427"
/replace=""
/replace="gtg"
/db_xref="dbSNP:1944959155"
variation 56
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:942941367"
variation 57
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:768928596"
variation 60..83
/gene="LOC101929427"
/replace=""
/replace="accaacaacaaaaggaccagccac"
/db_xref="dbSNP:1944959638"
variation 62..70
/gene="LOC101929427"
/replace="caacaa"
/replace="caacaacaa"
/db_xref="dbSNP:1944959753"
variation 65
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:920068525"
variation 68
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1291511368"
variation 69
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:145217034"
variation 71
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:2134977743"
variation 73
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1490379627"
variation 75
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1591883024"
variation 77
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1217792609"
variation 78
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1944960792"
variation 81
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:184277758"
variation 83
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:886190416"
variation 88
/gene="LOC101929427"
/replace="c"
/replace="g"
/db_xref="dbSNP:1944961262"
variation 95
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:2134977828"
variation 96
/gene="LOC101929427"
/replace="c"
/replace="g"
/db_xref="dbSNP:1565621802"
variation 98
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:949874891"
variation 104
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:535005297"
variation 106
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1944961661"
variation 108
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1217006283"
variation 118
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1363959359"
variation 120
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1298793967"
variation 121..122
/gene="LOC101929427"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1399157794"
variation 123
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:2134977931"
variation 132
/gene="LOC101929427"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1358314815"
variation 133..141
/gene="LOC101929427"
/replace="aagaag"
/replace="aagaagaag"
/db_xref="dbSNP:1375205339"
variation 134
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:2134977962"
variation 146
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1467729443"
exon 153..473
/gene="LOC101929427"
/inference="alignment:Splign:2.1.0"
variation 153
/gene="LOC101929427"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1434973121"
variation 154
/gene="LOC101929427"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:557365073"
variation 158
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:2135102549"
variation 159
/gene="LOC101929427"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:901472982"
variation 160
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1465047499"
variation 161
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1171079862"
variation 163
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946469321"
variation 166
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1591950862"
variation 172
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:777850146"
variation 174
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1456245749"
variation 180
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:997436891"
variation 182
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:773160459"
variation 185
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1292552155"
variation 186
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1946470437"
variation 189
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1032723888"
variation 192..193
/gene="LOC101929427"
/replace="g"
/replace="gg"
/db_xref="dbSNP:1173637385"
variation 192
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:2135102685"
variation 195
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1453049196"
variation 197
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1252176644"
variation 198
/gene="LOC101929427"
/replace=""
/replace="t"
/db_xref="dbSNP:1187423779"
variation 200
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:577297387"
variation 201
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:771188550"
variation 206
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1340409278"
variation 208
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:953204805"
variation 211
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:2135102798"
variation 215
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:957354704"
variation 217
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1946471705"
variation 218
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:2135102847"
variation 219
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:988553813"
variation 220
/gene="LOC101929427"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1320257243"
variation 227
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1946472137"
variation 229
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1221377383"
variation 232
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946472374"
variation 235
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1016096514"
variation 242
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1266245152"
variation 244
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1213726786"
variation 245
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1359561570"
variation 252
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1276610324"
variation 254
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1489594424"
variation 255
/gene="LOC101929427"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1467057211"
variation 256
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:912896552"
variation 258
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:754652092"
variation 259
/gene="LOC101929427"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:536794970"
variation 260..262
/gene="LOC101929427"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:917915858"
variation 262
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:911141057"
variation 266..267
/gene="LOC101929427"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1946474272"
variation 270
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1194273491"
variation 278
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:772534632"
variation 279
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946474652"
variation 280
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:949366555"
variation 285
/gene="LOC101929427"
/replace="c"
/replace="g"
/db_xref="dbSNP:1163884180"
variation 289
/gene="LOC101929427"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1350051355"
variation 299
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1459150338"
variation 300..301
/gene="LOC101929427"
/replace=""
/replace="c"
/db_xref="dbSNP:1295757968"
variation 303
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:776189284"
variation 305
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1400121617"
variation 307
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1369781093"
variation 308
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:371449017"
variation 313
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1475291751"
variation 314
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:749626477"
variation 316
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1228045226"
variation 321
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1256209458"
variation 331
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1185093647"
variation 335..336
/gene="LOC101929427"
/replace="g"
/replace="gg"
/db_xref="dbSNP:563346573"
variation 335
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1481592185"
variation 342..344
/gene="LOC101929427"
/replace="a"
/replace="aga"
/db_xref="dbSNP:1251854028"
variation 345
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1203702234"
variation 348
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946477032"
variation 350
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1946477160"
variation 351
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1458116973"
variation 354
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:557261914"
variation 356
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1164159428"
variation 363
/gene="LOC101929427"
/replace="c"
/replace="g"
/db_xref="dbSNP:1946477674"
variation 368
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1214754868"
variation 369
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1946477901"
variation 370
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1285641542"
variation 371
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1946478179"
variation 375
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:1565646225"
variation 376
/gene="LOC101929427"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:145442734"
variation 379
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946478952"
variation 380
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:2135103471"
variation 385
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946479149"
variation 386
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1591951450"
variation 387
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1218977027"
variation 388
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1335664813"
variation 390
/gene="LOC101929427"
/replace="a"
/replace="t"
/db_xref="dbSNP:542904070"
variation 391
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:879456496"
variation 393
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:148908823"
variation 401
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1292782605"
variation 424
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1565646266"
variation 425
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:898364724"
variation 429
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1946480710"
variation 431
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1591951534"
variation 436
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:192947422"
variation 448
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:930044023"
variation 449
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1375595356"
variation 452
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1299303422"
variation 454
/gene="LOC101929427"
/replace="a"
/replace="c"
/db_xref="dbSNP:1946481498"
variation 456
/gene="LOC101929427"
/replace="a"
/replace="g"
/db_xref="dbSNP:1442108631"
variation 463
/gene="LOC101929427"
/replace="g"
/replace="t"
/db_xref="dbSNP:1398564217"
variation 468
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1447795758"
variation 470
/gene="LOC101929427"
/replace="c"
/replace="t"
/db_xref="dbSNP:1946482037"
ORIGIN
caggcaattcaccaggacagaggcctttcaactttcctccctgagatcttcctccgtgaaccaacaacaaaaggaccagccacctcactggtcctctgttgccagtagaaaaagccctacaaggattaatgcaagaagaagttctgctttggggttctatgaggctgaaaatattggatcagtattcctgaggaatctgcgtttcagaatcccaggtccggaaggacaagaagtactttgcaaacaaatcaaatgtacgtttaggaagatgaaatcatgcaacagaaagatttttcagaatttttcagcaacagattttacacacaattcagaaggaagaaagaacagatgagtttgggaatcaggagaccagatgtcaagactggactacatctttatattcatttccagatttaaagttctatgttgtattttatttgatgcaaagcaataaaatattcctccctcctgtg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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