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Previous release (v1)
2024-04-20 20:30:01, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_104652 401 bp RNA linear PRI 03-SEP-2020
DEFINITION Homo sapiens uncharacterized LOC100506790 (LOC100506790), long
non-coding RNA.
ACCESSION NR_104652 XR_109776 XR_133563 XR_171137 XR_172414
VERSION NR_104652.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BX096809.1.
On or before Nov 23, 2013 this sequence version replaced
XR_109776.2, XR_171137.2, XR_133563.2, XR_172414.2.
##Evidence-Data-START##
Transcript exon combination :: BX096809.1, AI025173.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968968, SAMEA2148093
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-401 BX096809.1 1-401
FEATURES Location/Qualifiers
source 1..401
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq26.3"
gene 1..401
/gene="LOC100506790"
/note="uncharacterized LOC100506790"
/db_xref="GeneID:100506790"
ncRNA 1..401
/ncRNA_class="lncRNA"
/gene="LOC100506790"
/product="uncharacterized LOC100506790"
/db_xref="GeneID:100506790"
exon 1..33
/gene="LOC100506790"
/inference="alignment:Splign:2.1.0"
variation 3
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1306342041"
variation 8
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:2085052644"
variation 20
/gene="LOC100506790"
/replace="c"
/replace="g"
/db_xref="dbSNP:2085052656"
variation 22
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085052663"
variation 26
/gene="LOC100506790"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1278112460"
variation 27
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1946815559"
variation 31
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:1556464050"
variation 32
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085052712"
variation 33
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085052721"
exon 34..390
/gene="LOC100506790"
/inference="alignment:Splign:2.1.0"
variation 49
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085055612"
variation 51
/gene="LOC100506790"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:2531370"
variation 58
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:1431791739"
variation 67
/gene="LOC100506790"
/replace="a"
/replace="t"
/db_xref="dbSNP:2085055651"
variation 74
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1424816125"
variation 75
/gene="LOC100506790"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:183062736"
variation 79
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:188150700"
variation 80
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:782251238"
variation 89
/gene="LOC100506790"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1258614044"
variation 91
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:962058300"
variation 92
/gene="LOC100506790"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:971846940"
variation 95
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1556464305"
variation 97
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2148513650"
variation 98
/gene="LOC100506790"
/replace="c"
/replace="g"
/db_xref="dbSNP:1300289439"
variation 102
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:2148513652"
variation 110
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:782232376"
variation 112
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1369261635"
variation 114
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085055846"
variation 117
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1602704879"
variation 122
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:2085055871"
variation 123
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1306506289"
variation 130
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085055898"
variation 135
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1445398755"
variation 140
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085055926"
variation 148
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:782372117"
variation 151
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:533693498"
variation 159
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:2085055973"
variation 169
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:951710661"
variation 173
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:980454176"
variation 175
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1464947960"
variation 178
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085056018"
variation 179
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056033"
variation 181
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:2085056040"
variation 183
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085056053"
variation 184
/gene="LOC100506790"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1358970483"
variation 185
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1416419100"
variation 202
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056100"
variation 203
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:781948798"
variation 204
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1440410283"
variation 209
/gene="LOC100506790"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1556464331"
variation 210
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:371497619"
variation 212
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1178913542"
variation 213..214
/gene="LOC100506790"
/replace="g"
/replace="gg"
/db_xref="dbSNP:1482208988"
variation 215
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:939282573"
variation 219
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056212"
variation 222
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056233"
variation 223
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:991989275"
variation 224
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:781975314"
variation 231
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1349684926"
variation 234
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085056290"
variation 237
/gene="LOC100506790"
/replace="c"
/replace="g"
/db_xref="dbSNP:1283425375"
variation 239
/gene="LOC100506790"
/replace="a"
/replace="t"
/db_xref="dbSNP:2085056325"
variation 240
/gene="LOC100506790"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:2085056334"
variation 243
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:945424598"
variation 247
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1377031785"
variation 248
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:868958829"
variation 249
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056388"
variation 254
/gene="LOC100506790"
/replace="c"
/replace="g"
/db_xref="dbSNP:2085056399"
variation 260
/gene="LOC100506790"
/replace="a"
/replace="t"
/db_xref="dbSNP:2085056414"
variation 274
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:2085056425"
variation 282
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:782095652"
variation 284
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1643863536"
variation 290
/gene="LOC100506790"
/replace="c"
/replace="g"
/db_xref="dbSNP:2085056447"
variation 293..295
/gene="LOC100506790"
/replace="a"
/replace="aaa"
/db_xref="dbSNP:2085056464"
variation 294
/gene="LOC100506790"
/replace="a"
/replace="c"
/db_xref="dbSNP:782695256"
variation 296
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:903960206"
variation 303
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056504"
variation 309
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1394850267"
variation 313
/gene="LOC100506790"
/replace="g"
/replace="t"
/db_xref="dbSNP:1379042259"
variation 314
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:782088981"
variation 326
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:782333147"
variation 328
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:1358957838"
variation 334
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:782023913"
variation 340
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:2270096"
variation 342
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085056610"
variation 351
/gene="LOC100506790"
/replace="a"
/replace="t"
/db_xref="dbSNP:891376854"
variation 359..360
/gene="LOC100506790"
/replace="a"
/replace="aa"
/db_xref="dbSNP:782764488"
variation 366
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:1008438903"
variation 367
/gene="LOC100506790"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1382274323"
variation 384
/gene="LOC100506790"
/replace="a"
/replace="g"
/db_xref="dbSNP:2085056682"
variation 385
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:782169994"
variation 386
/gene="LOC100506790"
/replace="c"
/replace="t"
/db_xref="dbSNP:2085056707"
ORIGIN
ctttcttaaaaagcaatctgagtggcctgacaggctttcttagttgagctgtcttcctgaggttgtttggagccgctgcgtcatggataaataactccctaaagccagtcccaacaagcttgcactgaacatcaagaagcctgacaagtccttcaaatgcaagaagcccacccaaaatgtgctggtctttttaatcaacagacaactgggcaggcacagaagcgacatcaacctgtcaaggtggatatggatgctgtcataaagcaactccagggtgaacatggccttggacaaagagtcatgtggcttatgtgctgaggcctgcccagaattctgagatattaattataattagaacaataaactcctcccatgtttgagctattaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]