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Previous release (v1)
2024-04-26 22:04:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_026578 578 bp RNA linear PRI 19-APR-2022
DEFINITION Homo sapiens OCLN pseudogene 1 (OCLNP1), non-coding RNA.
ACCESSION NR_026578
VERSION NR_026578.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 578)
AUTHORS van der Steege G, Draaijers TG, Grootscholten PM, Osinga J,
Anzevino R, Velona I, Den Dunnen JT, Scheffer H, Brahe C, van Ommen
GJ et al.
TITLE A provisional transcript map of the spinal muscular atrophy (SMA)
critical region
JOURNAL Eur J Hum Genet 3 (2), 87-95 (1995)
PUBMED 7552146
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC044797.5.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
Transcript exon combination :: SRR1803611.424158.1,
SRR7410571.90043.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2152798, SAMEA2154405
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-24 AC044797.5 190033-190056 c
25-240 AC044797.5 179763-179978 c
241-412 AC044797.5 176783-176954 c
413-454 AC044797.5 173297-173338 c
455-578 AC044797.5 171189-171312 c
FEATURES Location/Qualifiers
source 1..578
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="5"
/map="5q13.2"
gene 1..578
/gene="OCLNP1"
/note="OCLN pseudogene 1"
/pseudo
/db_xref="GeneID:647859"
/db_xref="HGNC:HGNC:53916"
misc_RNA 1..578
/gene="OCLNP1"
/product="OCLN pseudogene 1"
/pseudo
/db_xref="GeneID:647859"
/db_xref="HGNC:HGNC:53916"
exon 1..24
/gene="OCLNP1"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 1..4
/gene="OCLNP1"
/replace="ag"
/replace="agag"
/db_xref="dbSNP:572339250"
variation 3
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1049935356"
variation 4
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1411220064"
variation 6
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1754170059"
variation 10
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1754169971"
variation 12
/gene="OCLNP1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1754169865"
variation 21
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:746530140"
variation 22
/gene="OCLNP1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:777080688"
variation 23
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:528099933"
variation 24
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:748093110"
exon 25..240
/gene="OCLNP1"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 25
/gene="OCLNP1"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1347321730"
variation 41
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1293996290"
variation 42
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:753586981"
variation 53
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:781410425"
variation 61
/gene="OCLNP1"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:757407987"
variation 86
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1398088298"
variation 87
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1294504311"
variation 97
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1754052764"
variation 98
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1754052717"
variation 122
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1020376571"
variation 126
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1235216458"
variation 131
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1423430002"
variation 133..151
/gene="OCLNP1"
/replace=""
/replace="tgcaaagggaagagcagga"
/db_xref="dbSNP:1754052481"
variation 165
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1169002157"
variation 170
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:751805521"
variation 179
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1268705554"
variation 180
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1204866622"
variation 184
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1754052164"
variation 202
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:796099759"
variation 205
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:764140903"
variation 206
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287555383"
variation 209
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:763068077"
variation 224
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1348951199"
variation 229
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1234668252"
variation 239
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:753186499"
exon 241..412
/gene="OCLNP1"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 246
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:777077327"
variation 254
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1299376064"
variation 256
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1754022439"
variation 260
/gene="OCLNP1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1561548018"
variation 268
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1446805318"
variation 273
/gene="OCLNP1"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:2150227199"
variation 279
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1754022255"
variation 280
/gene="OCLNP1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1266602584"
variation 281
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1337384127"
variation 283
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:770712540"
variation 286
/gene="OCLNP1"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1328823712"
variation 291
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:760309845"
variation 292
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1252571528"
variation 296
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1378541629"
variation 299
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1176058202"
variation 300
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1754021680"
variation 315
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1431930843"
variation 316
/gene="OCLNP1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1410723553"
variation 317
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:2150227189"
variation 321
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1754021465"
variation 322
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:772905356"
variation 324
/gene="OCLNP1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1457339186"
variation 334
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:538967014"
variation 345
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1754020990"
variation 346
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:577515296"
variation 347
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1484136843"
variation 349
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1581018612"
variation 351
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:990760694"
variation 352
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1256366743"
variation 361
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1232520589"
variation 362
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1310386198"
variation 363
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:552805780"
variation 376
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1240280691"
variation 377
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1754020177"
variation 387
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1375456015"
variation 390
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1306679570"
variation 398
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1454239209"
variation 407
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1403422770"
variation 408
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:768527770"
variation 410
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1464799257"
exon 413..454
/gene="OCLNP1"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 415
/gene="OCLNP1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1581016478"
variation 418
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:2150226232"
variation 419
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1209763689"
variation 420
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1424601356"
variation 431
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1019038617"
variation 433
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1461205590"
variation 442
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1753954659"
exon 455..578
/gene="OCLNP1"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 456
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1364493309"
variation 473..480
/gene="OCLNP1"
/replace="aagaa"
/replace="aagaagaa"
/db_xref="dbSNP:1753924274"
variation 475
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1753924379"
variation 484
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1753924171"
variation 488
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:751781520"
variation 499
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:2666626"
variation 512
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1753923818"
variation 515
/gene="OCLNP1"
/replace="a"
/replace="t"
/db_xref="dbSNP:1224784751"
variation 517
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1753923730"
variation 518
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1753923636"
variation 527
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1358766877"
variation 533
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1165565080"
variation 536
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1460967126"
variation 538
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1366992431"
variation 542..548
/gene="OCLNP1"
/replace="aga"
/replace="agacaga"
/db_xref="dbSNP:1753922998"
variation 543
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1458415296"
variation 545
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1753923086"
variation 555
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:758440230"
variation 560
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1753922804"
variation 563
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1373600895"
variation 565
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:371115260"
variation 569
/gene="OCLNP1"
/replace="a"
/replace="c"
/db_xref="dbSNP:765854061"
variation 570
/gene="OCLNP1"
/replace="a"
/replace="g"
/db_xref="dbSNP:1753922383"
variation 574
/gene="OCLNP1"
/replace="c"
/replace="g"
/db_xref="dbSNP:1753922296"
variation 575
/gene="OCLNP1"
/replace="c"
/replace="t"
/db_xref="dbSNP:1403767389"
variation 578
/gene="OCLNP1"
/replace="g"
/replace="t"
/db_xref="dbSNP:1338597032"
ORIGIN
agagtcttcctataaatccacgccggttcctgaagtggttcaggagcttccattaacttcgcctgtggatgacttcaggcagcctcgttacagcagcggtggtaactttgagacaccttcaaaaagagcacctgcaaagggaagagcaggaaggtcaaagagaacagagcaagatcactatgagacagactacacaactggtggcgagtcctgtgatgagctggaggaggactggatcagggaatatccacctatcacttcagatcaacaaagacaactgtacaagaggaattttgacactggcctacaggaatacaagagcttacaatcagaacttgatgagatcaataaagaactctcccgtttggataaagaattggatgactatagagaagaaagtgaagagtacatggctgctgctgatgaatacaatagactgaagcaagtgaagggatctgcagattacaaaagtaagaagaatcattgcaagcagttaaacagcaaattgtcacacatcaagaagatggttggagactatgatagacagaaaacatagaaggctgatgccaagttgtttg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]