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Previous release (v1)
2024-04-26 23:40:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_001560 310 bp RNA linear PRI 04-SEP-2020
DEFINITION Homo sapiens CYCS pseudogene 52 (CYCSP52), non-coding RNA.
ACCESSION NR_001560
VERSION NR_001560.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 310)
AUTHORS Zhang Z and Gerstein M.
TITLE The human genome has 49 cytochrome c pseudogenes, including a relic
of a primordial gene that still functions in mouse
JOURNAL Gene 312, 61-72 (2003)
PUBMED 12909341
REFERENCE 2 (bases 1 to 310)
AUTHORS Evans MJ and Scarpulla RC.
TITLE The human somatic cytochrome c gene: two classes of processed
pseudogenes demarcate a period of rapid molecular evolution
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85 (24), 9625-9629 (1988)
PUBMED 2849112
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AF533163.1.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-310 AF533163.1 1-310
FEATURES Location/Qualifiers
source 1..310
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="1"
/map="1q23.1"
gene 1..310
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/note="CYCS pseudogene 52"
/pseudo
/db_xref="GeneID:360155"
/db_xref="HGNC:HGNC:24393"
misc_RNA 1..310
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/product="CYCS pseudogene 52"
/pseudo
/db_xref="GeneID:360155"
/db_xref="HGNC:HGNC:24393"
exon 1..310
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/inference="alignment:Splign:2.1.0"
/pseudo
variation 2
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1427397297"
variation 3
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1463885969"
variation 9
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1370959718"
variation 10
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1674890637"
variation 10
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1674890577"
variation 11
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1467272737"
variation 16..18
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1674890819"
variation 22..28
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="aaga"
/replace="aagaaga"
/db_xref="dbSNP:1674890894"
variation 24
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1480575041"
variation 26
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:557865006"
variation 30
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1001981786"
variation 32
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1251238436"
variation 34
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674891317"
variation 39
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674891398"
variation 42
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674891470"
variation 46
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674891557"
variation 47
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1054697585"
variation 48
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1396427339"
variation 49
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674891876"
variation 53
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:2103201518"
variation 58
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1226920144"
variation 64
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674892041"
variation 68
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:1674892121"
variation 69
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1324546822"
variation 73
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674892261"
variation 76
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1285210106"
variation 78
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/db_xref="dbSNP:1020430556"
variation 81
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:773412792"
variation 82
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390155961"
variation 84
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/db_xref="dbSNP:570058490"
variation 86
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1394728348"
variation 88
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1297969304"
variation 91
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/db_xref="dbSNP:1469944051"
variation 93
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674893093"
variation 94
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:1332008629"
variation 104
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1173626163"
variation 106
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674893299"
variation 109
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674893363"
variation 111
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/db_xref="dbSNP:1674893454"
variation 112
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:747536541"
variation 115..116
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="gg"
/db_xref="dbSNP:1674893699"
variation 115
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:537133387"
variation 119
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1183841942"
variation 121
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674893847"
variation 126..132
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="caggcca"
/replace="caggccaggcca"
/db_xref="dbSNP:953734076"
variation 126
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1249481239"
variation 127
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:1674894384"
variation 137
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674894450"
variation 138..139
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="t"
/replace="tt"
/db_xref="dbSNP:1674894605"
variation 138
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:985552985"
variation 144
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1461933450"
variation 145..154
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="acacagatgc"
/replace="acacagatgcacacagatgc"
/db_xref="dbSNP:1674894821"
variation 145
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674894750"
variation 148
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674894884"
variation 152
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674894953"
variation 154
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1644221666"
variation 155
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674895028"
variation 157
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674895093"
variation 161
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:761036149"
variation 168
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:2103201605"
variation 169
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/db_xref="dbSNP:1674895229"
variation 171
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674895289"
variation 176
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1265308271"
variation 177
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:555456876"
variation 178..181
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="ggg"
/replace="gggg"
/db_xref="dbSNP:1674895512"
variation 180
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:573867454"
variation 181
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674895661"
variation 182
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="aa"
/db_xref="dbSNP:540709646"
variation 183
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674895809"
variation 185
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674895903"
variation 186
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1280239268"
variation 191
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674896045"
variation 192
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:183649324"
variation 194
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:918431409"
variation 199
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674896393"
variation 206..209
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="agaa"
/db_xref="dbSNP:1674896534"
variation 206
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/db_xref="dbSNP:1306719361"
variation 210
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:1674896595"
variation 214
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1453917926"
variation 216
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:949898891"
variation 217
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="t"
/db_xref="dbSNP:981523401"
variation 219..229
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="gtacatccttg"
/db_xref="dbSNP:1674896813"
variation 222
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:2103201657"
variation 224
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:769419183"
variation 227
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1159799574"
variation 228
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674897057"
variation 229
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674897134"
variation 230
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674897211"
variation 233
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/db_xref="dbSNP:1266632967"
variation 238
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674898094"
variation 239
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674898166"
variation 245..247
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="ttg"
/replace="ttgttcttattg"
/db_xref="dbSNP:1674898219"
variation 247
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674898280"
variation 249
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:937347284"
variation 250
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674898409"
variation 255
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="g"
/replace="t"
/db_xref="dbSNP:1674898489"
variation 258
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1054879703"
variation 267
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:757743873"
variation 269
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:56283707"
variation 274
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1442061640"
variation 279
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:946291787"
variation 281
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674899026"
variation 283
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1674899073"
variation 286
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1571698077"
variation 288
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="t"
/db_xref="dbSNP:1207030001"
variation 293
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1349154660"
variation 296
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1309219958"
variation 301
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1041832239"
variation 305
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674899600"
variation 307
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1674899760"
variation 307
/gene="CYCSP52"
/gene_synonym="HC6; HCP2"
/replace="a"
/replace="g"
/db_xref="dbSNP:1674899683"
ORIGIN
acgggtgatattgagaaaggcaagaagatttgtgttcagaagtgtgcccagtgccacactgtggaaaagggaggcaagcacgagactgggcctaatctccatgtctctttgggtggaagacaggtcaggccactggattctcttacacagatgccaataagaacaaaggcattacctggggagaggataccgatggagtatttggagaatcccaagaagtacatccttggaacaaaaatgatctttgccgacattaaggcagaaaagggcagacttgatagattatctcaaaaaagctactaatggataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]