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Previous release (v1)
2024-05-04 08:16:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_207409 426 bp mRNA linear PRI 12-NOV-2023
DEFINITION Homo sapiens colipase like 2 (CLPSL2), transcript variant 2, mRNA.
ACCESSION NM_207409
VERSION NM_207409.4
KEYWORDS RefSeq; MANE Select.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 426)
AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall
R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG,
Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF,
Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC,
Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A,
Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG,
Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S,
Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A,
Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van
Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S,
Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli
D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V,
Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X,
Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S,
Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood
MA.
TITLE A reference map of the human binary protein interactome
JOURNAL Nature 580 (7803), 402-408 (2020)
PUBMED 32296183
REFERENCE 2 (bases 1 to 426)
AUTHORS Zhang Z and Henzel WJ.
TITLE Signal peptide prediction based on analysis of experimentally
verified cleavage sites
JOURNAL Protein Sci 13 (10), 2819-2824 (2004)
PUBMED 15340161
REFERENCE 3 (bases 1 to 426)
AUTHORS Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J,
Chow B, Chui C, Crowley C, Currell B, Deuel B, Dowd P, Eaton D,
Foster J, Grimaldi C, Gu Q, Hass PE, Heldens S, Huang A, Kim HS,
Klimowski L, Jin Y, Johnson S, Lee J, Lewis L, Liao D, Mark M,
Robbie E, Sanchez C, Schoenfeld J, Seshagiri S, Simmons L, Singh J,
Smith V, Stinson J, Vagts A, Vandlen R, Watanabe C, Wieand D, Woods
K, Xie MH, Yansura D, Yi S, Yu G, Yuan J, Zhang M, Zhang Z, Goddard
A, Wood WI, Godowski P and Gray A.
TITLE The secreted protein discovery initiative (SPDI), a large-scale
effort to identify novel human secreted and transmembrane proteins:
a bioinformatics assessment
JOURNAL Genome Res 13 (10), 2265-2270 (2003)
PUBMED 12975309
REMARK Erratum:[Genome Res. 2003 Dec;13(12):2759]
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
CD513822.1, AL157823.9 and AW665167.1.
On Nov 22, 2018 this sequence version replaced NM_207409.3.
Transcript Variant: This variant (2) lacks an alternate exon that
results in a frameshift in the 3' coding region, compared to
variant 1. The encoded isoform (b) has a distinct C-terminus and is
shorter than isoform a.
##Evidence-Data-START##
Transcript exon combination :: AW665167.1, ERR3218370.415568.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2153347, SAMEA2159931
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
MANE Ensembl match :: ENST00000403376.4/ ENSP00000385898.3
RefSeq Select criteria :: based on manual assertion, expression
##RefSeq-Attributes-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-16 CD513822.1 32-47
17-18 AL157823.9 77506-77507
19-49 CD513822.1 50-80
50-421 AW665167.1 9-380 c
422-426 CD513822.1 555-559
FEATURES Location/Qualifiers
source 1..426
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6p21.31"
gene 1..426
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="colipase like 2"
/db_xref="GeneID:389383"
/db_xref="HGNC:HGNC:21250"
exon 1..105
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/inference="alignment:Splign:2.1.0"
variation 2
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1268794700"
variation 3
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1767838892"
variation 8
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1439153531"
variation 10
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1473371357"
variation 11
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1033286346"
variation 15
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1413551699"
variation 16
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1406436634"
CDS 22..324
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="isoform b precursor is encoded by transcript
variant 2; colipase-like protein C6orf126; colipase-like
protein 2"
/codon_start=1
/product="colipase-like protein 2 isoform b precursor"
/protein_id="NP_997292.2"
/db_xref="CCDS:CCDS4810.2"
/db_xref="GeneID:389383"
/db_xref="HGNC:HGNC:21250"
/translation="
MAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCISKDLMCSRRCHMI"
sig_peptide 22..84
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="/evidence=ECO:0000269|PubMed:15340161; propagated
from UniProtKB/Swiss-Prot (Q6UWE3.3)"
mat_peptide 85..321
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/product="Colipase-like protein 2. /id=PRO_0000022608"
/note="propagated from UniProtKB/Swiss-Prot (Q6UWE3.3)"
misc_feature 121..>285
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="Colipase; a stoichiometric cofactor for pancreatic
lipase, allowing the enzyme to anchor itself to the
water-lipid interface and stabilizing the active enzyme
conformation; Region: COLIPASE; cl29842"
/db_xref="CDD:453069"
variation 22
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:542418070"
variation 23
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:904154313"
variation 25
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1401998697"
variation 27
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1767839519"
variation 28
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1409347275"
variation 29
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1171025987"
variation 30
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:999874326"
variation 32
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1352491038"
variation 33
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1413204805"
variation 37
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1561936041"
variation 38
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1282167388"
variation 39
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1417053435"
variation 40
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1031904519"
variation 43
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767840446"
variation 44
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:975424856"
variation 47
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:892024465"
variation 48
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:766309715"
variation 49
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1767840789"
variation 50
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1193062643"
variation 50
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="gcccg"
/db_xref="dbSNP:1767840933"
variation 51
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1305245091"
variation 53
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:985624222"
variation 54..65
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="cctgtcgggggc"
/replace="cctgtcgggggccctgtcgggggc"
/db_xref="dbSNP:1639686981"
variation 56
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1767841166"
variation 58
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1467241602"
variation 60
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1203728699"
variation 62
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1274775009"
variation 64
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1483803230"
variation 66
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1260230956"
variation 67
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767841576"
variation 71
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1185411249"
variation 72
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1237229343"
variation 76
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:934099089"
variation 77
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1184092270"
variation 78
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1271262426"
variation 79
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1417917003"
variation 87
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1221326156"
variation 91
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1346293087"
variation 93
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1429684776"
variation 95
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1303384466"
variation 96
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151057277"
variation 99
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1438063475"
variation 100..104
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="aaaa"
/replace="aaaaa"
/db_xref="dbSNP:1169260533"
variation 100
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1581945538"
variation 103
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="t"
/db_xref="dbSNP:1372515577"
variation 104
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1378565068"
variation 105
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:987323297"
exon 106..228
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/inference="alignment:Splign:2.1.0"
variation 109
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:770795310"
variation 110
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:576215514"
variation 111..114
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="ca"
/replace="caca"
/db_xref="dbSNP:775831818"
variation 114
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390437461"
variation 117
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1273733907"
variation 118
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:759265200"
variation 121
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:765183991"
variation 122
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1288855217"
variation 123
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:775422014"
variation 128
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="t"
/db_xref="dbSNP:762165998"
variation 129
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:767834702"
variation 131
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1581946269"
variation 137..148
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="agtg"
/replace="agtgctacagtg"
/db_xref="dbSNP:1767865131"
variation 138
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1250507181"
variation 144
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:750495919"
variation 148
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1198171037"
variation 149
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1215564667"
variation 150
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:756181469"
variation 153
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:543239434"
variation 155
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:755424623"
variation 156
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767865671"
variation 159
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767865742"
variation 160
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767865851"
variation 161
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:779313231"
variation 163
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1456558697"
variation 167
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:201520783"
variation 170
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767866361"
variation 171
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:758094974"
variation 174
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:375844212"
variation 175
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:111605439"
variation 176
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1383171805"
variation 177
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:2151057692"
variation 180
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:891388822"
variation 182
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:770405782"
variation 183
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:745886789"
variation 186
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:769824369"
variation 188
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1328895554"
variation 190
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1229333112"
variation 191
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:775475316"
variation 194
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1354801058"
variation 200
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1174178935"
variation 203
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1209820101"
variation 206
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1767868287"
variation 209
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1015553938"
variation 210
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767868494"
variation 215
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:762790749"
variation 218
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:767885897"
variation 219
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:766638950"
variation 224
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:773419719"
variation 225
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:760681616"
variation 226
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1159571295"
variation 228
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767869368"
exon 229..426
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/inference="alignment:Splign:2.1.0"
variation 230
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:537453167"
variation 231
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1338243723"
variation 232
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1040170580"
variation 233
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1456036250"
variation 236
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:146388571"
variation 237
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1435406704"
variation 240
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1389936037"
variation 245
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:778804822"
variation 246
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1291812947"
variation 247
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:747869977"
variation 249
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1387559563"
variation 250
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767917130"
variation 252
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1303750229"
variation 253
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:552420542"
variation 258..259
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="t"
/replace="tt"
/db_xref="dbSNP:768141300"
variation 260
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1267289402"
variation 262
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:139719161"
variation 263
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:765588339"
variation 264
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:190920712"
variation 267
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1391184411"
variation 269
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:769805715"
variation 273
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1581948140"
variation 275
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767918442"
variation 276
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:775545074"
variation 277
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1162648608"
variation 281
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1270527097"
variation 285
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767918972"
variation 289
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:868108999"
variation 290
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767919230"
variation 292
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1040838350"
variation 295
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="t"
/db_xref="dbSNP:1767919480"
variation 297
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:200576280"
variation 301
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1581948180"
variation 302
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767919804"
variation 304
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:182349553"
variation 305
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1402931204"
variation 307
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:751977243"
variation 308
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:900828412"
variation 309
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1458422955"
variation 314
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:200339173"
variation 316
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1348810678"
variation 323
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1767920921"
variation 329
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:767207400"
variation 330
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1767921064"
variation 331
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1048721131"
variation 332
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="t"
/db_xref="dbSNP:1354818671"
variation 337
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1373831376"
variation 341
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151058519"
variation 342
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:750041587"
variation 343
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1767921417"
variation 345
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:755817812"
variation 350
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1321066246"
variation 353
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1581948257"
variation 355
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1028013611"
variation 356
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1228419311"
variation 357
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1767921767"
variation 361
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:553175575"
variation 364
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:753365248"
variation 365
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1012579028"
variation 366
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1011172654"
variation 367
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1471393762"
variation 370
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1581948289"
variation 372
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:2151058545"
variation 375
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1180490814"
variation 377
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1413622031"
variation 378
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="g"
/db_xref="dbSNP:1438151252"
variation 380
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:754988197"
variation 381
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1021502680"
variation 386
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:1368841408"
variation 388
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:966944292"
variation 390
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1372273505"
variation 394
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="t"
/db_xref="dbSNP:117790648"
variation 396
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/db_xref="dbSNP:1427745633"
variation 397
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1767923280"
variation 406
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1430409464"
regulatory 408..413
/regulatory_class="polyA_signal_sequence"
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="hexamer: ATTAAA"
variation 414
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="g"
/replace="t"
/db_xref="dbSNP:1389624092"
variation 417
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="t"
/db_xref="dbSNP:982597442"
variation 421..422
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1035139142"
polyA_site 426
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/note="major polyA site"
variation 426
/gene="CLPSL2"
/gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045"
/replace="a"
/replace="c"
/db_xref="dbSNP:1767923730"
ORIGIN
gctgctctgccgcccaggcccatggccgcagccctggcgctcgtggcgggggtcctgtcgggggcggtgctgcccctctggagcgcgcttccgcaatataaaaagaaaatcacagacaggtgcttccaccactctgagtgctacagtggctgctgcctcatggacttggactccggtggagccttctgtgcccccagggccagaataaccatgatctgcttgccccagaccaagggagctaccaacatcatctgcccttgccggatgggcttgacgtgcatatccaaggacttgatgtgttcccgccggtgccatatgatttagaggaagatgcaggctggtcactgctcccttggggccataggccctggttgccaccaacttgctccaaatccagctcctgagacattaaagtcacttcctgtc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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