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Previous release (v1)
2024-04-29 06:59:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_003895 7425 bp mRNA linear PRI 08-NOV-2023
DEFINITION Homo sapiens synaptojanin 1 (SYNJ1), transcript variant 1, mRNA.
ACCESSION NM_003895
VERSION NM_003895.4
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 7425)
AUTHORS Song DY, Yuan L, Cui N, Feng C, Meng L, Wang XH, Xiang M, Liu D,
Wang C, Zhang Z, Li JY and Li W.
TITLE alpha-Synuclein induces deficiency in clathrin-mediated endocytosis
through inhibiting synaptojanin1 expression
JOURNAL J Neurochem 167 (3), 461-484 (2023)
PUBMED 37788328
REMARK GeneRIF: alpha-Synuclein induces deficiency in clathrin-mediated
endocytosis through inhibiting synaptojanin1 expression.
REFERENCE 2 (bases 1 to 7425)
AUTHORS Viard J, Loe-Mie Y, Daudin R, Khelfaoui M, Plancon C, Boland A,
Tejedor F, Huganir RL, Kim E, Kinoshita M, Liu G, Haucke V, Moncion
T, Yu E, Hindie V, Blehaut H, Mircher C, Herault Y, Deleuze JF,
Rain JC, Simonneau M and Lepagnol-Bestel AM.
TITLE Chr21 protein-protein interactions: enrichment in proteins involved
in intellectual disability, autism, and late-onset Alzheimer's
disease
JOURNAL Life Sci Alliance 5 (12), e202101205 (2022)
PUBMED 35914814
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 7425)
AUTHORS Zou L, Zhang X, Xiong M, Meng L, Tian Y, Pan L, Yuan X, Chen G,
Wang Z, Bu L, Yao Z, Zhang Z, Ye K and Zhang Z.
TITLE Asparagine endopeptidase cleaves synaptojanin 1 and triggers
synaptic dysfunction in Parkinson's disease
JOURNAL Neurobiol Dis 154, 105326 (2021)
PUBMED 33677035
REMARK GeneRIF: Asparagine endopeptidase cleaves synaptojanin 1 and
triggers synaptic dysfunction in Parkinson's disease.
REFERENCE 4 (bases 1 to 7425)
AUTHORS Paesmans J, Martin E, Deckers B, Berghmans M, Sethi R, Loeys Y,
Pardon E, Steyaert J, Verstreken P, Galicia C and Versees W.
TITLE A structure of substrate-bound Synaptojanin1 provides new insights
in its mechanism and the effect of disease mutations
JOURNAL Elife 9, e64922 (2020)
PUBMED 33349335
REMARK GeneRIF: A structure of substrate-bound Synaptojanin1 provides new
insights in its mechanism and the effect of disease mutations.
Publication Status: Online-Only
REFERENCE 5 (bases 1 to 7425)
AUTHORS Ando K, Ndjim M, Turbant S, Fontaine G, Pregoni G, Dauphinot L,
Yilmaz Z, Suain V, Mansour S, Authelet M, De Dekker R, Leroy K,
Delatour B, Duyckaerts C, Potier MC and Brion JP.
CONSRTM Brain Bank NeuroCEB Neuropathology Network
TITLE The lipid phosphatase Synaptojanin 1 undergoes a significant
alteration in expression and solubility and is associated with
brain lesions in Alzheimer's disease
JOURNAL Acta Neuropathol Commun 8 (1), 79 (2020)
PUBMED 32493451
REMARK GeneRIF: The lipid phosphatase Synaptojanin 1 undergoes a
significant alteration in expression and solubility and is
associated with brain lesions in Alzheimer's disease.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 7425)
AUTHORS Haffner C, Takei K, Chen H, Ringstad N, Hudson A, Butler MH,
Salcini AE, Di Fiore PP and De Camilli P.
TITLE Synaptojanin 1: localization on coated endocytic intermediates in
nerve terminals and interaction of its 170 kDa isoform with Eps15
JOURNAL FEBS Lett 419 (2-3), 175-180 (1997)
PUBMED 9428629
REFERENCE 7 (bases 1 to 7425)
AUTHORS Nemoto Y, Arribas M, Haffner C and DeCamilli P.
TITLE Synaptojanin 2, a novel synaptojanin isoform with a distinct
targeting domain and expression pattern
JOURNAL J Biol Chem 272 (49), 30817-30821 (1997)
PUBMED 9388224
REFERENCE 8 (bases 1 to 7425)
AUTHORS Micheva KD, Kay BK and McPherson PS.
TITLE Synaptojanin forms two separate complexes in the nerve terminal.
Interactions with endophilin and amphiphysin
JOURNAL J Biol Chem 272 (43), 27239-27245 (1997)
PUBMED 9341169
REFERENCE 9 (bases 1 to 7425)
AUTHORS Ringstad N, Nemoto Y and De Camilli P.
TITLE The SH3p4/Sh3p8/SH3p13 protein family: binding partners for
synaptojanin and dynamin via a Grb2-like Src homology 3 domain
JOURNAL Proc Natl Acad Sci U S A 94 (16), 8569-8574 (1997)
PUBMED 9238017
REFERENCE 10 (bases 1 to 7425)
AUTHORS Cook Shukla,L., Schulze,J., Farlow,J., Pankratz,N.D., Wojcieszek,J.
and Foroud,T.
TITLE Parkinson Disease Overview
JOURNAL (in) Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH,
Gripp KW and Amemiya A (Eds.);
GENEREVIEWS(R);
(1993)
PUBMED 20301402
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AP000279.2, AP000278.2,
AP000277.3, AP000276.3 and AP000275.1.
On Dec 20, 2022 this sequence version replaced NM_003895.3.
Summary: This gene encodes a phosphoinositide phosphatase that
regulates levels of membrane phosphatidylinositol-4,5-bisphosphate.
As such, expression of this enzyme may affect synaptic transmission
and membrane trafficking. Multiple transcript variants encoding
different isoforms have been found for this gene. [provided by
RefSeq, Sep 2011].
Transcript Variant: This variant (1) encodes the longest isoform
(a).
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AF009040.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMEA1965299,
SAMEA1966682 [ECO:0006172]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-449 AP000279.2 22010-22458 c
450-595 AP000279.2 20836-20981 c
596-682 AP000278.2 21752-21838 c
683-950 AP000278.2 19629-19896 c
951-1176 AP000278.2 14848-15073 c
1177-1260 AP000278.2 14019-14102 c
1261-1322 AP000278.2 8097-8158 c
1323-1419 AP000278.2 6769-6865 c
1420-1589 AP000278.2 5539-5708 c
1590-1671 AP000278.2 3829-3910 c
1672-1824 AP000278.2 1287-1439 c
1825-1981 AP000277.3 24527-24683 c
1982-2005 AP000277.3 22214-22237 c
2006-2197 AP000277.3 19222-19413 c
2198-2282 AP000277.3 16170-16254 c
2283-2423 AP000277.3 12315-12455 c
2424-2616 AP000277.3 11825-12017 c
2617-2775 AP000277.3 10795-10953 c
2776-2932 AP000277.3 3598-3754 c
2933-3050 AP000277.3 2885-3002 c
3051-3266 AP000277.3 2569-2784 c
3267-3345 AP000276.3 4727-4805 c
3346-3508 AP000276.3 1623-1785 c
3509-3718 AP000275.1 68200-68409 c
3719-3862 AP000275.1 67453-67596 c
3863-3901 AP000275.1 66775-66813 c
3902-3949 AP000275.1 65217-65264 c
3950-3988 AP000275.1 63902-63940 c
3989-4059 AP000275.1 63703-63773 c
4060-4168 AP000275.1 61478-61586 c
4169-4386 AP000275.1 60715-60932 c
4387-7425 AP000275.1 50570-53608 c
FEATURES Location/Qualifiers
source 1..7425
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="21"
/map="21q22.11"
gene 1..7425
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="synaptojanin 1"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
exon 1..449
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
misc_feature 298..300
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="upstream in-frame stop codon"
CDS 355..5193
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/EC_number="3.1.3.36"
/note="isoform a is encoded by transcript variant 1;
inositol 5'-phosphatase (synaptojanin 1); synaptojanin-1,
polyphosphoinositide phosphatase; synaptic inositol
1,4,5-trisphosphate 5-phosphatase 1; phosphoinositide
5-phosphatase; inositol polyphosphate-5-phosphatase G"
/codon_start=1
/product="synaptojanin-1 isoform a"
/protein_id="NP_003886.3"
/db_xref="CCDS:CCDS33539.2"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
/translation="
MRKRWACWSGSDAPGGCGGGCGRRRRRSRRKRAASEERRMAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYSKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRIDSSDEDRISEVRKVLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVVYLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKNLYGKQIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFDYHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRVSEQTLQSASSKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFIEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQNIYKEVIAVQGPPDGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDGKRESPLKIDPFEDLSFNLLAVSKAQLSVQTSPVPTPDPKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQENMRSSPNPFITGLTRTNPFSDRTAAPGNPFRAKSEESEATSWFSKEEPVTISPFPSLQPLGHNKSRASSSLDGFKDSFDLQGQSTLKISNPKGWVTFEEEEDFGVKGKSKSACSDLLGNQPSSFSGSNLTLNDDWNKGTNVSFCVLPSRRPPPPPVPLLPPGTSPPVDPFTTLASKASPTLDFTER"
misc_feature 571..1911
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoinositide polyphosphatase (Sac family)
[Signal transduction mechanisms]; Region: COG5329"
/db_xref="CDD:227637"
misc_feature 2068..3075
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Catalytic inositol polyphosphate 5-phosphatase
(INPP5c) domain of synaptojanin 1; Region: INPP5c_Synj1;
cd09098"
/db_xref="CDD:197332"
misc_feature order(2092..2094,2098..2100,2242..2244,2473..2478,
2536..2538,2545..2550,2659..2661,2665..2667,2671..2673,
2821..2826,2869..2871,2887..2889,3043..3048)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative active site [active]"
/db_xref="CDD:197332"
misc_feature order(2092..2094,2242..2244,2536..2538,2659..2661,
2665..2667,2887..2889,3043..3048)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative catalytic site [active]"
/db_xref="CDD:197332"
misc_feature order(2098..2100,2242..2244,3043..3045)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:197332"
misc_feature order(2242..2244,2473..2478,2536..2538,2545..2550,
2671..2673,2821..2826,2869..2871,3043..3045)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative PI/IP binding site [chemical binding];
other site"
/db_xref="CDD:197332"
misc_feature order(2536..2538,2665..2667,3046..3048)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197332"
misc_feature 3070..3495
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Domain of unknown function (DUF1866); Region:
DUF1866; pfam08952"
/db_xref="CDD:286093"
misc_feature <3652..4839
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
exon 450..595
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 596..682
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 683..950
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 951..1176
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1177..1260
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1261..1322
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1323..1419
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1420..1589
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1590..1671
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1672..1824
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1825..1981
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1982..2005
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2006..2197
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2198..2282
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2283..2423
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2424..2616
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2617..2775
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2776..2932
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2933..3050
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3051..3266
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3267..3345
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3346..3508
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3509..3718
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3719..3862
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3863..3901
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3902..3949
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3950..3988
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3989..4059
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 4060..4168
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 4169..4386
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 4387..7425
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
regulatory 7405..7410
/regulatory_class="polyA_signal_sequence"
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="hexamer: AATAAA"
polyA_site 7425
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="major polyA site"
ORIGIN
ctctcccgtcaggcccgtgggggcggcggggttggtcctgacgcccagcttggggagcagcaatacgcagccccccaagcttttctccggagtccctccccggcgctcacgctctgaagagcccacgcaaaaggaccaaggaggccagatcttccctctccctgcacccccggcggtgggatcgcagctctgcctgggggcggccgcaggaggcaaaggtagctggagactgaggctggggccgcccgcgggtgccaggcccagccggtcggcgcagagtgggcgtggtctccctcctgatgccccgccccttccctcgcgcggggcggatcttccgcccccggccgcggcgcaatgcggaagagatgggcctgctggagcggaagtgacgctcccggcggctgtggcggcggctgcgggagaaggaggaggaggagccggaggaagagggctgcctccgaagaaaggagaatggcgttcagtaaaggattccggatctatcacaaattggatcccccacctttcagcctcatagtggaaactaggcataaggaagaatgtctcatgttcgagtctggggctgtcgctgtgctctcatctgcagaaaaagaggcaatcaagggtacatactccaaagtactggatgcatatggactcttaggtgttctgcggttaaatcttggtgatactatgttacattatctggtcctagtcactggatgtatgtctgttggaaaaattcaagaatctgaagttttccgagttacttccactgagtttatatcactgcgaatcgattcttcagatgaggatcgcatttcagaagtgcggaaagttttgaattcaggaaacttttattttgcatggtctgcatctggcatcagtttagatttgagtcttaatgcgcatcgtagcatgcaagaacagacaactgataatagatttttctggaatcagtctttgcatttgcatctcaaacactatggcgtgaattgtgatgactggttattacgtcttatgtgtggaggagtagaaatcagaacaatttatgctgctcataaacaggcgaaggcttgcctcatttcaagattaagctgtgaacgagctgggaccaggtttaatgtccggggaacaaatgatgatggtcatgttgccaattttgtagaaacagaacaggttgtgtacttagatgactcagtttcttccttcatacaaatccgaggatctgttccattgttctgggagcaaccagggttgcaagtgggatctcatcgtgtccgtatgtcaaggggatttgaagccaatgcacctgcttttgacaggcattttagaacacttaagaacttatatggtaaacaaataatagtaaatttgcttggatctaaggaaggtgaacatatgctaagtaaagctttccagagtcatttgaaagcttctgaacatgctgctgatatccagatggtgaattttgactatcatcaaatggttaagggaggaaaggcagaaaaattacatagtgttcttaaacctcaagtccagaagtttctagattatggatttttttatttcaatggaagtgaagttcaaagatgccagagtggtacagttcgaacaaactgcttggattgtcttgatagaacaaatagtgtgcaggcatttcttggcttagagatgctagctaaacagttggaagctcttggtttagctgaaaagcctcagttggtgactcgctttcaagaagtttttcggtcaatgtggtccgtgaatggtgattcaatcagtaagatatatgcaggaactggagctcttgaagggaaagcgaagttaaaagatggtgctcgctctgttacccgaacaattcagaataacttctttgacagctccaagcaagaggccattgatgttttgctactgggaaatactctgaatagtgatttagctgacaaagctcgagcacttttaactactggaagtttgcgtgtttctgagcagacattacagtcagcatcttctaaagtactaaagagcatgtgtgagaatttctacaaatattcaaagcctaagaaaattcgagtatgtgtcggaacctggaatgtgaatggtgggaagcaatttcgcagcatagcttttaagaatcagacactcactgactggcttcttgatgcacccaagttagctggcatccaggagtttcaagataaaagaagtaagccaactgatatatttgcaattggttttgaagaaatggtagaattgaatgctggaaacattgtgagtgcaagcacaacaaatcagaagctctgggctgtagaacttcagaagacaatctccagagacaacaagtatgtgctgctggcttctgaacagttggtgggcgtctgtttgtttgtttttatcagaccacagcatgctccttttatcagggatgttgcagttgatactgtgaagactggaatgggaggtgcaactggaaataagggagcagttgcaatccgaatgctcttccatacaaccagcctttgcttcgtctgtagccactttgctgcagggcagtcacaagtcaaagaaagaaatgaagattttatagaaatagcacgaaaattgagttttcctatgggaaggatgctattttcccatgactatgtattttggtgtggtgatttcaactatcgaatcgatctccctaacgaagaagttaaagagctcataagacagcaaaattgggattctcttatagcaggagatcaacttatcaatcagaaaaatgctggacaggtttttagaggatttttagaaggaaaggtaacctttgctccgacatataagtatgacttgttttctgacgactatgacaccagtgaaaagtgccgcacccctgcctggacagaccgtgtcctttggagaaggaggaaatggccttttgatagatcagctgaagatctagatcttctaaatgctagttttcaagatgaaagcaaaattctgtacacgtggactccaggcactttgctgcactatggaagagctgagctgaagacttctgaccacaggcctgtcgttgccctgattgatatagatatatttgaagttgaagctgaagagaggcaaaacatttataaagaagtaattgcagttcagggtccaccagatggtacagtattggtctcaatcaaaagttctttaccagaaaataatttttttgatgatgccttgattgatgagcttctgcagcagtttgcaagttttggtgaagttatacttataagatttgtagaagataaaatgtgggttacatttttggagggaagctctgccttgaatgttctgagcctaaatggtaaagagttattgaatcggactataactattgctttaaaaagtccagactggatcaaaaatttggaagaagaaatgagtttagagaaaattagcattgcattgccatcatcaacaagctctaccctgcttggtgaagatgcagaggttgcagcagattttgatatggaaggtgatgttgatgactatagtgctgaagtggaggaacttcttcctcagcatctccagccatcttcaagttccggccttggtacttcccccagctcttcaccccgaactagtccctgccagtcacctacaatatcagagggtcctgtaccttcccttcccatcagaccaagccgagcaccgtcaagaactcctgggcctcccagtgcacagagttctcctattgacgcgcagccagcaacgccgctgccgcagaaagaccccgcccagcccttggagcccaagcggccgccgccgccccgcccggtcgcccctcccacacgcccggctcccccacagagacctcctccgccttcaggggctaggagtcctgcacccactagaaaggaatttggaggtattggagcccctcccagtcctggggtagctaggagagagatggaagcacccaaaagccctggaacaacaaggaaagataatataggacgcagtcagccttcacctcaagcaggacttgcaggcccaggacctgctggatacagtacagccagaccgacgattcctcctcgtgctggagttatcagtgccccacagagccacgcgcgggcatctgctggaagactgactcctgaaagccaaagcaaaacatcagaaacgtcgaaaggttcaactttccttcctgaaccactgaagcctcaggctgcttttcctccgcagtcttctttgcccccgcctgctcaaaggttgcaagagcctcttgtccctgtggcagcacctatgcctcagtctggcccccagccaaatttggaaaccccaccacaaccaccacctcgaagcaggtcatcccatagcttgccttcagaagcttcctcacaaccgcaagtaaaaacaaatggaatctctgatggcaaaagagaatcaccattaaagattgacccatttgaagatctgtcatttaatctgcttgctgtatcaaaggctcagctatctgttcaaacgtcacctgttcccaccccagacccaaagaggttgattcagttgccttctgcaacgcaaagtaatgttttgagttctgtaagttgcatgccaacaatgcctccaattccagctcggagtcaatcccaggaaaatatgcgaagttctccaaacccatttattactggcttgaccaggacaaatcctttcagtgacaggactgctgctcctggaaacccatttagagccaagtctgaagaatcagaggcaacttcatggttctccaaagaagagcccgttactatcagtcctttcccttctctgcagcctcttggtcataacaaaagcagggcttcatcttcacttgatggctttaaggacagttttgatctacagggccagtctacattaaaaattagcaacccgaaaggatgggtaaccttcgaggaagaagaggattttggtgtgaaagggaagtcaaagtcagcttgttcagacttactgggtaatcagccaagttcattttctggctccaacctgacattgaatgatgactggaataaaggtacaaatgtctccttctgtgtgttgccgtcaagaagacctcctccacctcctgtccctctgctcccgcccggcaccagccctccagtagatcctttcacgaccttggcctctaaggcttcacccacactggactttacagaaagataacgccatgcaatagaaaacagtgggtacttgcttttggcaggatagagctaagagaattgggcattagtatttcattatgtgcaataagtcattgtaagtgcactgatatcttcacaaaacaccactatttgatgtgtacagagttggactatgtgtatattggaaataaggaaaaacccttctcattgttaactggagttttgatgtatttctctttggatgaataggagacagtagtagccataaaaagtacttatactttagaaaacagtccttattcagaaacttttcggtcagtcttctgaagaatctcaaaaagcccacccaactttcagctgacatttccaccagccctctcatacttgttaacaattggtatctttgagtatttaccaaagagctgccaaggttacagtgaacagagttttgaaaggcattgctttaaaggaaaaaagtataggtatgtgtacatatataatacatacaaacacatgtacttctgtatacatttacatatttttacaattcatactttaatttctaggctataactcagaccaaattatacctaaaagttccaacaaagtccctttttcaatatcacattaccaaaaagatggctgcaaatgtaatttggacctttcattaattttgttttcaaaactagaataatctcaccacagaatcagaattttctaccgttccacacccaaccccttcaaatacacacaaccttgttacttttcactccagcaccttcatacgcttttctccaggaggaggttcttgcagctggaaacagcctattttgtggtcactgtcaagtggatggatattctagcgctcccaaaaaagcactatggccttatatgcagggaaggcacataccaccaagttcaatgagaaatattagagctaaccgtactctcttctctgcgtacgttcgagtatacgttgcccatatccctcccatattttctttttgctgcttttgctctggaactttgcttttagcagggaaagcagctgtcccctgagtgctttgaattgggaatatacccagtgtgtgttctcccccctcttacgaggctacataacacatctatgatgctgctttaagtttttagaggctatacctcaaagtagctgcggattttgtctcctgcactgccaatatgcaactgatcccgcttttattaattttttgaagaagtacacagaatttttacagaatgtagtattttgatatcattaagtaaaccaatcagaaaactccttgagcaatagttgtttctttgtcagtttcagttacaatcatctttacccattaagacttacattaacattccttttatataaagagttgtatatgtccacctaaattcctatgtccacacttaacctttaaagatgtacattgagggaatatcaaaaaatagcgttcatggctacgaatatgtagaatgttaaaagcacagcaaactgcactgcacttataaagcaaatctattagaaaaaaagcatttttctaaatgctcaaatgttatcaaaatactatatttatagaagtaatcttctctgttaacagccaagatttgctgttagaaataactcttgtgagttttatattgtgctttttggaggttctaatcatttcagcagtagcgtcttaaacagcagtattactataagcagttgcttcaaaatgtgaattaacttgttgaaactgtggctttaacatccatgtgactagtgtatatggtatttgctctccattagcaaaataattcattgttaggtaaacttcactagtgcaaattgcagatctgtgagcaatgtttcctattgaatataaactactgtctaaaatatacatatcagcagcccagcctttatcaggaaaattatacttggcaagttgctgaaaatgcacaaagttatgaaagttaaaggtatgctgcaaataactagccattattctatgtattattaaatatttactagttctgttaaaagcagagcagaagttagacactaaggatctctttgtgaactctgtgttctctatattagattgctgtttatatgtaagaattttattgcttatgtggcatacaatatttataactataaactttatagaagtacagtattaaagtcagtggtacacagacattctgtacatatcctgtgaaacgtgctgtcatatgaaataaatatatctgtctttac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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