2024-05-04 04:36:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001832 538 bp mRNA linear PRI 11-SEP-2020 DEFINITION Homo sapiens colipase (CLPS), transcript variant 1, mRNA. ACCESSION NM_001832 VERSION NM_001832.4 KEYWORDS RefSeq; MANE Select. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 538) AUTHORS Zhang G, He P, Tan H, Budhu A, Gaedcke J, Ghadimi BM, Ried T, Yfantis HG, Lee DH, Maitra A, Hanna N, Alexander HR and Hussain SP. TITLE Integration of metabolomics and transcriptomics revealed a fatty acid network exerting growth inhibitory effects in human pancreatic cancer JOURNAL Clin. Cancer Res. 19 (18), 4983-4993 (2013) PUBMED 23918603 REMARK GeneRIF: Low CLPS expression is associated with pancreatic cancer. REFERENCE 2 (bases 1 to 538) AUTHORS Xiao X, Ferguson MR, Magee KE, Hale PD, Wang Y and Lowe ME. TITLE The Arg92Cys colipase polymorphism impairs function and secretion by increasing protein misfolding JOURNAL J. Lipid Res. 54 (2), 514-521 (2013) PUBMED 23204298 REMARK GeneRIF: humans with the Arg92Cys substitution will secrete less functional colipase REFERENCE 3 (bases 1 to 538) AUTHORS Weyrich P, Albet S, Lammers R, Machicao F, Fritsche A, Stefan N and Haring HU. TITLE Genetic variability of procolipase associates with altered insulin secretion in non-diabetic Caucasians JOURNAL Exp. Clin. Endocrinol. Diabetes 117 (2), 83-87 (2009) PUBMED 18726866 REMARK GeneRIF: CLPS genetic variability associates with insulin secretory function in non-diabetic humans and may represent a novel candidate gene for development of type 2 diabetes GeneRIF: Observational study of gene-disease association. (HuGE Navigator) REFERENCE 4 (bases 1 to 538) AUTHORS Wermter AK, Scherag A, Holter K, Reichwald K, Lichtner P, Siegfried W, Blundell J, Lawton C, Whybrow S, Stubbs J, Arch JR, Meitinger T, Platzer M, Hinney A and Hebebrand J. TITLE Procolipase gene: no association with early-onset obesity or fat intake JOURNAL Obes Facts 2 (1), 40-44 (2009) PUBMED 20054203 REMARK GeneRIF: found no evidence for an association of pancreatic colipase(CLPS) single nucleotide polymorphisms rs2766597, rs41270082, rs3748050, and rs3748051 with obesity or percentage of dietary fat intake GeneRIF: Observational study of gene-disease association and gene-environment interaction. (HuGE Navigator) REFERENCE 5 (bases 1 to 538) AUTHORS D'Silva S, Xiao X and Lowe ME. TITLE A polymorphism in the gene encoding procolipase produces a colipase, Arg92Cys, with decreased function against long-chain triglycerides JOURNAL J. Lipid Res. 48 (11), 2478-2484 (2007) PUBMED 17715423 REMARK GeneRIF: Our findings demonstrate that the Arg92Cys polymorphism decreases the function of Cys92 colipase. This change may contribute to the development of type 2 diabetes. REFERENCE 6 (bases 1 to 538) AUTHORS van Tilbeurgh H, Sarda L, Verger R and Cambillau C. TITLE Structure of the pancreatic lipase-procolipase complex JOURNAL Nature 359 (6391), 159-162 (1992) PUBMED 1522902 REFERENCE 7 (bases 1 to 538) AUTHORS Sims HF and Lowe ME. TITLE The human colipase gene: isolation, chromosomal location, and tissue-specific expression JOURNAL Biochemistry 31 (31), 7120-7125 (1992) PUBMED 1643046 REFERENCE 8 (bases 1 to 538) AUTHORS Davis RC, Xia YR, Mohandas T, Schotz MC and Lusis AJ. TITLE Assignment of the human pancreatic colipase gene to chromosome 6p21.1 to pter JOURNAL Genomics 10 (1), 262-265 (1991) PUBMED 2045105 REFERENCE 9 (bases 1 to 538) AUTHORS Lowe ME, Rosenblum JL, McEwen P and Strauss AW. TITLE Cloning and characterization of the human colipase cDNA JOURNAL Biochemistry 29 (3), 823-828 (1990) PUBMED 2337598 REFERENCE 10 (bases 1 to 538) AUTHORS Sternby,B., Engstrom,A., Hellman,U., Vihert,A.M., Sternby,N.H. and Borgstrom,B. TITLE The primary sequence of human pancreatic colipase JOURNAL Biochim. Biophys. Acta 784 (1), 75-80 (1984) PUBMED 6691986 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BP324927.1. On May 17, 2019 this sequence version replaced NM_001832.3. Summary: The protein encoded by this gene is a cofactor needed by pancreatic lipase for efficient dietary lipid hydrolysis. It binds to the C-terminal, non-catalytic domain of lipase, thereby stabilizing an active conformation and considerably increasing the overall hydrophobic binding site. The gene product allows lipase to anchor noncovalently to the surface of lipid micelles, counteracting the destabilizing influence of intestinal bile salts. This cofactor is only expressed in pancreatic acinar cells, suggesting regulation of expression by tissue-specific elements. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]. Transcript Variant: This variant (1) encodes the longest isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BP324927.1, BP322637.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2151405, SAMEA2153347 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000259938.7/ ENSP00000259938.2 RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-538 BP324927.1 1-538 FEATURES Location/Qualifiers source 1..538 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="6" /map="6p21.31" gene 1..538 /gene="CLPS" /note="colipase" /db_xref="GeneID:1208" /db_xref="HGNC:HGNC:2085" /db_xref="MIM:120105" exon 1..119 /gene="CLPS" /inference="alignment:Splign:2.1.0" variation 1 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1312463071" variation 2 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1768395111" variation 3 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1304945494" variation 5 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:566561357" variation 7 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:199655623" variation 8 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:758654606" variation 9 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:753617155" variation 10 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:779758516" variation 11 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:2151066299" variation 14 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:182775439" variation 16 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768394527" variation 17 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:897962921" variation 19 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1476798164" variation 21 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:1040553250" variation 23 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:750392162" variation 24 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:767121014" variation 25 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:756767591" variation 26 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:751119258" variation 27 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:763798105" variation 29 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:762563597" variation 30 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:775893258" variation 31 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1768393849" variation 32 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:765589133" variation 33 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:3748050" variation 34 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1768393491" CDS 36..374 /gene="CLPS" /note="isoform 1 preproprotein is encoded by transcript variant 1; colipase, pancreatic; pancreatic colipase preproprotein" /codon_start=1 /product="colipase isoform 1 preproprotein" /protein_id="NP_001823.1" /db_xref="CCDS:CCDS4811.1" /db_xref="GeneID:1208" /db_xref="HGNC:HGNC:2085" /db_xref="MIM:120105" /translation="
MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ"
sig_peptide 36..86 /gene="CLPS" /inference="COORDINATES: ab initio prediction:SignalP:4.0" proprotein 87..371 /gene="CLPS" /product="colipase isoform 1 proprotein" misc_feature 87..371 /gene="CLPS" /note="Colipase; Region: COLIPASE; smart00023" /db_xref="CDD:128339" mat_peptide 102..371 /gene="CLPS" /product="colipase isoform 1" variation 36 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:777068073" variation 41 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1315317085" variation 44 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:2151066273" variation 46..59 /gene="CLPS" /replace="tcctg" /replace="tcctgatcctcctg" /db_xref="dbSNP:751060585" variation 47 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:771434902" variation 48 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:1378018837" variation 49 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:747055917" variation 50 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:773306828" variation 51 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1400478202" variation 52..58 /gene="CLPS" /replace="tcct" /replace="tcctcct" /replace="tcctcctcct" /db_xref="dbSNP:761365160" variation 53 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:772312585" variation 58 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:2766597" variation 59 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1305934138" variation 60 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1395448153" variation 61 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:779892659" variation 63 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1422981055" variation 64 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1391790164" variation 65 /gene="CLPS" /replace="" /replace="c" /db_xref="dbSNP:1308613334" variation 65 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:755917684" variation 66 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:529464575" variation 69..74 /gene="CLPS" /replace="ctct" /replace="ctctct" /db_xref="dbSNP:1768391681" variation 69 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:781207545" variation 71 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768391754" variation 77 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:200437409" variation 78 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:200244589" variation 79 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1768391450" variation 81..83 /gene="CLPS" /replace="t" /replace="tat" /db_xref="dbSNP:763805542" variation 82 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768391383" variation 83 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:560934358" variation 86 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768391154" variation 88 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1350639651" variation 89 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:112222376" variation 90 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1267702100" variation 92 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768390851" variation 93 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768390776" variation 94 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:763736793" variation 95..99 /gene="CLPS" /replace="cccc" /replace="ccccc" /replace="cccccc" /db_xref="dbSNP:762528702" variation 95 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:145002055" variation 96 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:867356635" variation 98 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1054340429" variation 99 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:372093288" variation 100 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:140966197" variation 101 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1768390026" variation 102 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1241944041" variation 104 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:777015087" variation 111 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768389754" variation 112 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768389683" variation 113 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1482413707" variation 119 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1307951939" exon 120..242 /gene="CLPS" /inference="alignment:Splign:2.1.0" variation 120 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:751569641" variation 122 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1473812421" variation 125 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:201723286" variation 126 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:748075746" variation 131 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1239507675" variation 132 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:373305697" variation 136 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:770146707" variation 137 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768350892" variation 138 /gene="CLPS" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:760509453" variation 139 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1211417050" variation 140 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1356710984" variation 142 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:963027635" variation 143 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1303690334" variation 145 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1264620527" variation 148 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:773085590" variation 151 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768349344" variation 152 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:771885099" variation 154 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1014768828" variation 159 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1311590635" variation 161 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:2151065555" variation 163 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1447560624" variation 164 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:564175583" variation 165..170 /gene="CLPS" /replace="tgc" /replace="tgctgc" /db_xref="dbSNP:771284541" variation 167 /gene="CLPS" /replace="" /replace="c" /db_xref="dbSNP:1340758519" variation 169 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:778278888" variation 170 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:2151065542" variation 171 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768348256" variation 172 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1231211321" variation 173 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1391987345" variation 174 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:768210121" variation 176 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:748806400" variation 179 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:2151065531" variation 182 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:983773632" variation 184 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:114191664" variation 185 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:113528670" variation 186 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:746168432" variation 189 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:781657138" variation 196 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:757673222" variation 197 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1452100861" variation 198 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:752167102" variation 199 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:142530335" variation 202 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768346404" variation 205 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1357600229" variation 206 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:941766533" variation 207 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:752858758" variation 210 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:535823602" variation 211 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:759890280" variation 212 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768345650" variation 213 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:147844591" variation 217 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1390477038" variation 218 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:144552522" variation 219 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1332156651" variation 222 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1456365631" variation 224 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:774284520" variation 227 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:574902061" variation 228 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:369964160" variation 230 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1158811789" variation 234 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1399740520" variation 235 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:775002903" variation 237 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1000840014" variation 242 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:902534621" exon 243..538 /gene="CLPS" /inference="alignment:Splign:2.1.0" variation 243 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1178438731" variation 244 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:140627661" variation 245 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:147555335" variation 247 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1359439305" variation 248 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:778333504" variation 249 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:772679554" variation 250 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1404809311" variation 251 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:149878789" variation 259 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:2151065244" variation 260 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:779118221" variation 262 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1400880683" variation 267 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:2151065231" variation 274 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768328138" variation 277 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1581960591" variation 278 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1169523042" variation 279 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:755023217" variation 280 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:114778877" variation 282 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1768327637" variation 286 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1183874815" variation 289 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:780280266" variation 293 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:756310741" variation 297 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1181803210" variation 298 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:376103498" variation 301 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1197437577" variation 302 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:762873369" variation 305 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1204289265" variation 308 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1051934306" variation 309 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:537217497" variation 311..329 /gene="CLPS" /replace="c" /replace="cgtgggctccatcaccaac" /db_xref="dbSNP:1768325864" variation 311 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:765091326" variation 312 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:150755879" variation 313 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768326431" variation 315 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:1312307939" variation 316 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1803299" variation 318 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1448299126" variation 323 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:556619142" variation 324 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1581960492" variation 326 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:770597798" variation 328 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1439916319" variation 331 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1295100322" variation 332 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1768325709" variation 334 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1351468584" variation 335 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:760287553" variation 338 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1425584596" variation 339 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1246656395" variation 340 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:2151065172" variation 341 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768325313" variation 342 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1581960449" variation 343 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:932958368" variation 346 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:922966521" variation 349 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1384786432" variation 351 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1193349641" variation 353 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:573352598" variation 354 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:748533143" variation 357 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1251323028" variation 358 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1177205190" variation 360 /gene="CLPS" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:41270082" variation 361 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:780396671" variation 363 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1223621708" variation 367 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1358326942" variation 368 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:373598060" variation 372 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:898044867" variation 374 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1304784652" variation 375 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:1241700686" variation 380 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768323674" variation 381 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1317046913" variation 384..386 /gene="CLPS" /replace="cc" /replace="ccc" /db_xref="dbSNP:1305666206" variation 385 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1338175395" variation 388 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:780044735" variation 390 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1369611938" variation 392 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1293914115" variation 394 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1404063606" variation 395 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1037382648" variation 396 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:1768322507" variation 399 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1168053257" variation 401 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1768322283" variation 402 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1365205137" variation 409 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1301591156" variation 411 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:756326802" variation 412 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:750710592" variation 416 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:2151065108" variation 417 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1452730369" variation 421..435 /gene="CLPS" /replace="t" /replace="taggcgcaggggcat" /db_xref="dbSNP:1194570055" variation 421 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1224205522" variation 423 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768321663" variation 424 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:567711356" variation 425 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:546150357" variation 426 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1488185028" variation 427 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768321423" variation 430 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1300212463" variation 431 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:2151065094" variation 432 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1223275548" variation 434..435 /gene="CLPS" /replace="" /replace="at" /db_xref="dbSNP:2151065086" variation 435..440 /gene="CLPS" /replace="tctc" /replace="tctctc" /db_xref="dbSNP:2151065083" variation 437 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768321168" variation 442 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:925088581" variation 444 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1471843696" variation 445 /gene="CLPS" /replace="" /replace="g" /db_xref="dbSNP:1162781876" variation 445 /gene="CLPS" /replace="c" /replace="g" /db_xref="dbSNP:2151065078" variation 452 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:528094398" variation 453 /gene="CLPS" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:552461215" variation 457 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1165432233" variation 458 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768320530" variation 460 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768320431" variation 461 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:530603346" variation 462 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:913951003" variation 463 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1384899474" variation 466 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1768319979" variation 468 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1327896416" variation 471 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1445127050" variation 474 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1768319680" variation 476 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1283140290" variation 478 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:563503714" variation 479 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1287148024" variation 480 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1248752506" variation 481 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:542339898" variation 484 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1353365059" variation 486..489 /gene="CLPS" /replace="at" /replace="atat" /db_xref="dbSNP:1440958723" variation 486 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1217880651" variation 487 /gene="CLPS" /replace="t" /replace="tt" /db_xref="dbSNP:2151065049" variation 488 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768318876" variation 489..491 /gene="CLPS" /replace="t" /replace="tct" /db_xref="dbSNP:1768318538" variation 489 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:530258031" variation 491 /gene="CLPS" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1467681587" variation 493 /gene="CLPS" /replace="a" /replace="t" /db_xref="dbSNP:1768318291" variation 495 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:992255903" variation 504 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:559893672" variation 505 /gene="CLPS" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:541389506" variation 506 /gene="CLPS" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1768317836" variation 507 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768317738" variation 512 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1378471288" variation 513 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1425414747" variation 521 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1768317414" variation 522 /gene="CLPS" /replace="g" /replace="t" /db_xref="dbSNP:1768317330" variation 523 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768317236" variation 525 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1159064272" variation 529 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1386648954" variation 530 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1412349483" variation 532 /gene="CLPS" /replace="a" /replace="c" /db_xref="dbSNP:1033716642" variation 535 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1340476605" variation 536..538 /gene="CLPS" /replace="tt" /replace="ttt" /db_xref="dbSNP:2151065022" variation 536 /gene="CLPS" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:980985528" variation 538 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1194150257" ORIGIN
gtctcccgccacccacaccagctgtcccactcaccatggagaagatcctgatcctcctgcttgtcgccctctctgtggcctatgcagctcctggcccccgggggatcattatcaacctggagaacggtgagctctgcatgaatagtgcccagtgtaagagcaattgctgccagcattcaagtgcgctgggcctggcccgctgcacatccatggccagcgagaacagcgagtgctctgtcaagacgctctatgggatttactacaagtgtccctgtgagcgtggcctgacctgtgagggagacaagaccatcgtgggctccatcaccaacaccaactttggcatctgccatgacgctggacgctccaagcagtgagactgcccacccactcccacacctagcccagaatgctgtaggccactaggcgcaggggcatctctcccctgctccagcgcatctcccgggctggccacctccttgaccagcatatctgttttctgattgcgctcttcacaattaaaggcctcctgcaaaccttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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