ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2025-09-19 19:35:28, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS NM_001437997 12715 bp mRNA linear PRI 14-APR-2025
DEFINITION Homo sapiens polyhomeotic homolog 3 (PHC3), transcript variant 7,
mRNA.
ACCESSION NM_001437997 XM_006713753 XM_054347944
VERSION NM_001437997.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 12715)
AUTHORS Wang,H., Lan,S., Wang,L., Zhao,J., Jia,X., Xu,J., Sun,G., Liu,L.,
Gong,S., Wang,N., Shan,B., Zhang,F. and Zhang,Z.
TITLE Expression of circ-PHC3 enhances ovarian cancer progression via
regulation of the miR-497-5p/SOX9 pathway
JOURNAL J Ovarian Res 16 (1), 142 (2023)
PUBMED 37468993
REMARK GeneRIF: Expression of circ-PHC3 enhances ovarian cancer
progression via regulation of the miR-497-5p/SOX9 pathway.
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 12715)
AUTHORS Benz,C., Ali,M., Krystkowiak,I., Simonetti,L., Sayadi,A.,
Mihalic,F., Kliche,J., Andersson,E., Jemth,P., Davey,N.E. and
Ivarsson,Y.
TITLE Proteome-scale mapping of binding sites in the unstructured regions
of the human proteome
JOURNAL Mol Syst Biol 18 (1), e10584 (2022)
PUBMED 35044719
REFERENCE 3 (bases 1 to 12715)
AUTHORS Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
TITLE A reference map of the human binary protein interactome
JOURNAL Nature 580 (7803), 402-408 (2020)
PUBMED 32296183
REFERENCE 4 (bases 1 to 12715)
AUTHORS Crea,F., Di Paolo,A., Liu,H.H., Polillo,M., Clermont,P.L.,
Guerrini,F., Ciabatti,E., Ricci,F., Barate,C., Fontanelli,G.,
Barsotti,S., Morganti,R., Danesi,R., Wang,Y., Petrini,M.,
Galimberti,S. and Helgason,C.D.
TITLE Polycomb genes are associated with response to imatinib in chronic
myeloid leukemia
JOURNAL Epigenomics 7 (5), 757-765 (2015)
PUBMED 26343356
REMARK GeneRIF: Data show that polycomb-group proteins BMI1, PHC3, CBX6
and CBX7 expression was significantly increased during imatinib
treatment.
REFERENCE 5 (bases 1 to 12715)
AUTHORS Crea,F., Sun,L., Pikor,L., Frumento,P., Lam,W.L. and Helgason,C.D.
TITLE Mutational analysis of Polycomb genes in solid tumours identifies
PHC3 amplification as a possible cancer-driving genetic alteration
JOURNAL Br J Cancer 109 (6), 1699-1702 (2013)
PUBMED 23942079
REMARK GeneRIF: PHC3 amplification may emerge as a biomarker in cancer.
REFERENCE 6 (bases 1 to 12715)
AUTHORS Deshpande,A.M., Akunowicz,J.D., Reveles,X.T., Patel,B.B.,
Saria,E.A., Gorlick,R.G., Naylor,S.L., Leach,R.J. and Hansen,M.F.
TITLE PHC3, a component of the hPRC-H complex, associates with E2F6
during G0 and is lost in osteosarcoma tumors
JOURNAL Oncogene 26 (12), 1714-1722 (2007)
PUBMED 17001316
REMARK GeneRIF: loss of PHC3 may favor tumorigenesis by potentially
disrupting the ability of cells to remain in G(0)
REFERENCE 7 (bases 1 to 12715)
AUTHORS Nousiainen,M., Sillje,H.H., Sauer,G., Nigg,E.A. and Korner,R.
TITLE Phosphoproteome analysis of the human mitotic spindle
JOURNAL Proc Natl Acad Sci U S A 103 (14), 5391-5396 (2006)
PUBMED 16565220
REFERENCE 8 (bases 1 to 12715)
AUTHORS Beausoleil,S.A., Jedrychowski,M., Schwartz,D., Elias,J.E.,
Villen,J., Li,J., Cohn,M.A., Cantley,L.C. and Gygi,S.P.
TITLE Large-scale characterization of HeLa cell nuclear phosphoproteins
JOURNAL Proc Natl Acad Sci U S A 101 (33), 12130-12135 (2004)
PUBMED 15302935
REFERENCE 9 (bases 1 to 12715)
AUTHORS Tonkin,E., Hagan,D.M., Li,W. and Strachan,T.
TITLE Identification and characterisation of novel mammalian homologues
of Drosophila polyhomeoticpermits new insights into relationships
between members of the polyhomeotic family
JOURNAL Hum Genet 111 (4-5), 435-442 (2002)
PUBMED 12384788
REFERENCE 10 (bases 1 to 12715)
AUTHORS Levine,S.S., Weiss,A., Erdjument-Bromage,H., Shao,Z., Tempst,P. and
Kingston,R.E.
TITLE The core of the polycomb repressive complex is compositionally and
functionally conserved in flies and humans
JOURNAL Mol Cell Biol 22 (17), 6070-6078 (2002)
PUBMED 12167701
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC023891.28 and AC008040.7.
On or before Apr 14, 2025 this sequence version replaced
XM_006713753.3, XM_054347944.1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14038195.383379.1,
SRR14038193.1705396.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMEA1965299,
SAMEA1966682 [ECO:0006172]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-47 AC023891.28 80213-80259 c
48-213 AC023891.28 77299-77464 c
214-369 AC023891.28 71083-71238 c
370-447 AC023891.28 69899-69976 c
448-606 AC023891.28 47612-47770 c
607-705 AC023891.28 43949-44047 c
706-952 AC023891.28 34945-35191 c
953-1821 AC023891.28 27210-28078 c
1822-1869 AC023891.28 26866-26913 c
1870-2023 AC023891.28 21117-21270 c
2024-2274 AC023891.28 15752-16002 c
2275-2434 AC023891.28 11886-12045 c
2435-2549 AC023891.28 5358-5472 c
2550-2682 AC008040.7 536-668
2683-2914 AC008040.7 760-991
2915-12715 AC008040.7 6086-15886
FEATURES Location/Qualifiers
source 1..12715
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="3"
/map="3q26.2"
gene 1..12715
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="polyhomeotic homolog 3"
/db_xref="GeneID:80012"
/db_xref="HGNC:HGNC:15682"
/db_xref="MIM:620031"
exon 1..47
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
misc_feature 46..48
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="upstream in-frame stop codon"
exon 48..213
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
CDS 70..3069
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="isoform 7 is encoded by transcript variant 7; early
development regulator 3; polyhomeotic-like protein 3;
homolog of polyhomeotic 3; early development regulatory
protein 3; polyhomeotic like 3"
/codon_start=1
/product="polyhomeotic-like protein 3 isoform 7"
/protein_id="NP_001424926.1"
/db_xref="GeneID:80012"
/db_xref="HGNC:HGNC:15682"
/db_xref="MIM:620031"
/translation="
MDTEPNPGTSSVSTTTSSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPSSAAQYLQQMYAAQQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQASSSTSGSITQQTMLLGSTSPTLTASQAQMYLRAQMLIFTPATTVAAVQSDIPVVSSSSSSSCQSAATQVQNLTLRSQKLGVLSSSQNGPPKSTSQTQSLTICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLPPAPSNAQSQHCSPIQSHPSPLTVSPNQSQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSALQPGPNLQQSTANQVQATAQLNLPSHLPLPASPVVHIGPVQQSALVSPGQQIVSPSHQQYSSLQSSPIPIASPPQMSTSPPAQIPPLPLQSMQSLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQTVAVNLQVQPPAPVDPPVGMHLNQCHLHKVFSLKVYQVEDVCEEEMPEESDECVRMDRTPPPPTLSPAAITVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPSHVSVPPPPLLLPAATTRSNSTSMHSSIPSIENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSLLIEQPVKKRPLLDNQVINSVCVQPELQNNTKHADNSSDTEMEDMIAEETLEEMDSELLKCEFCGKMGYANEFLRSKRFCTMSCAKRYNVSCSKKFALSRWNRKPDNQSLGHRGRRPSGPDGAAREHILRQLPITYPSAEEDLASHEDSVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLPVAQTEPSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKICARINSLKES"
misc_feature 70..171
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 376..516
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 742..918
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 856..858
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231,
ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 883..885
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:20068231,
ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 1006..1065
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1012..1014
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 1084..1299
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1498..1596
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1918..1977
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1942..1944
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:18220336,
ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332,
ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163,
ECO:0007744|PubMed:24275569; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 1957..1959
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:24275569; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 1963..1965
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231,
ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 2188..2277
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: HD1"
misc_feature 2398..2400
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:24275569; propagated from
UniProtKB/Swiss-Prot (Q8NDX5.1); phosphorylation site"
misc_feature 2401..2403
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:24275569;
propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
phosphorylation site"
misc_feature 2596..2658
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2707..2784
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="propagated from UniProtKB/Swiss-Prot (Q8NDX5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 214..369
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 370..447
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 448..606
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 607..705
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 706..952
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 953..1821
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 1822..1869
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 1870..2023
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2024..2274
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2275..2434
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2435..2549
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2550..2682
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2683..2914
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
exon 2915..12715
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/inference="alignment:Splign:2.1.0"
regulatory 5057..5062
/regulatory_class="polyA_signal_sequence"
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="hexamer: ATTAAA"
polyA_site 5078
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
regulatory 12694..12699
/regulatory_class="polyA_signal_sequence"
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="hexamer: AATAAA"
polyA_site 12715
/gene="PHC3"
/gene_synonym="EDR3; HPH3"
/note="major polyA site"
ORIGIN
agtgatggaggagagaagatggcggaagcggagtgagtgactagatgatttaaggaccatagtacagctatggatactgaaccaaacccgggaacatcttctgtgtcaacaacaaccagcagtaccaccaccaccaccatcaccacttcctcctctcgaatgcagcagccacagatctctgtctacagtggttcagaccgacatgctgtacaggtaattcaacaggcattgcatcggccccccagctcagctgctcagtaccttcagcaaatgtatgcagcccaacaacagcacttgatgctgcatactgcagctcttcagcagcagcatttaagcagctcccagcttcagagccttgctgctgttcaggcaagtttgtccagtggaagaccatctacatctcccacaggaagtgtcacacagcagtcaagtatgtcccaaacgtctatcaacctctccacttctcctacacctgcacagttaataagccgttcccaggcttccagttctaccagcggcagtattacccaacagactatgttactagggagtacttcccctaccctaacggcaagccaagctcaaatgtatctccgagctcaaatgctgattttcacacccgctaccactgtggctgctgtacagtctgacattcctgttgtctcgtcgtcatcgtcatcttcctgtcagtctgcagctactcaggttcagaatttaacattacgcagccagaagttgggtgtattatctagctcacagaatggtccaccaaaaagcactagtcaaactcagtcattgacaatttgtcataacaaaacaacagtgaccagttctaaaatcagccaacgagatccttctccagaaagtaataagaaaggagagagcccaagcctggaatcacgaagcacagctgtcacccggacatcaagtattcaccagttaatagcaccagcttcatattctccaattcagcctcattctctaataaaacatcagcagattcctcttcattcaccaccttccaaagtttcccatcatcagctgatattacaacagcagcaacagcaaattcagccaatcacacttcagaattcaactcaagacccacccccatcccagcactgtataccactccagaaccatggccttcctccagctcccagtaatgcccagtcacagcattgttcaccgattcagagtcatccctctcctttaacagtgtctcctaatcagtcacagtcagcacagcagtctgtagtggtgtctcctccaccacctcattcaccaagtcagtctcctactataattattcatccacaagcacttattcagccacaccctcttgtgtcatcagctctccagccagggccaaatttgcagcagtccactgctaatcaggtgcaagctacagcacagttgaatcttccatcccatcttccacttccagcttcccctgttgtacacattggcccagttcagcagtctgccttggtatccccaggccagcagattgtctctccatcacaccagcaatattcatccctgcagtcctctccaatcccaattgcaagtcctccacagatgtcgacatctcctccagctcagattccaccactgcccttgcagtctatgcagtctttacaagtgcagcctgaaattctgtcccagggccaggttttggtgcagaatgctttggtgtcagaagaggaacttccagctgcagaagctttggtccagttgccatttcagactcttcctcctccacagactgttgcggtaaacctacaagtgcaaccaccagcacctgttgatccaccagtgggaatgcatttgaaccagtgtcatctgcacaaagttttttctcttaaggtttatcaggtagaagatgtgtgtgaagaagaaatgccagaagagtcagatgaatgtgtccggatggatagaaccccaccaccacccactttgtctccagcagctataacagtggggagaggagaagatttgacttctgaacatcctttgttagagcaagtggaattacctgctgtggcatcagtcagtgcttcagtaattaaatctccatcagatccctcacatgtttctgttccaccacctccattgttacttccagctgccaccacaaggagtaacagtacatctatgcacagtagcattcccagtatagagaacaaacctccacaggctattgttaaaccacagatcctaacccatgttattgaaggctttgtgattcaggagggattggagccatttcctgtgagtcgttcctctttgctaatagaacagcctgtgaaaaaacggcctcttttggataatcaggtgataaattcagtgtgtgttcagccagagctacagaataatacaaaacatgcggataattcatctgacacagagatggaagacatgattgctgaagagacattagaagaaatggacagtgagttgctcaagtgtgaattctgtgggaaaatgggatatgctaatgaatttttgcggtcaaaacgattctgcactatgtcatgtgccaaaaggtacaatgttagctgttctaaaaaatttgcacttagtcgttggaatcgtaagcctgataatcaaagtcttgggcatcgtggccgtcgtccaagtggccctgatggggcagcgagagaacatatccttaggcagcttccaattacttatccatctgcagaagaagacttggcttctcatgaagattctgtgccatctgctatgacaactcgtctgcgcaggcagagcgagcgggaaagagaacgtgagcttcgggatgtgagaattcggaaaatgcctgagaacagtgacttgctaccagttgcacaaacagagccatctatatggacagttgatgatgtctgggccttcatccattctttgcctggctgccaggatatcgcagatgaattcagagcacaggagattgatggacaggcccttctcttgctgaaagaagaccatctcatgagtgcaatgaatatcaagctaggcccagccctgaagatctgtgcacgcatcaactctctgaaggaatcttaacaggaacatgaagccttgataaaacagcagttttacttttctcacaaaaacttgtaaggtaaaggcctaacttggtctagaatatgacacttattgtggtggatagccaagcacattgggatctccacatcaaatactgacatttcttctacaggtataataattcatcatgcattttcataattaataaacattggtaaaattaattttacaggttacatgaaacattgaaagacttgttacagagggccatgatatttttcaaagaaatgtgttatactagataatttttttaaaggtgatgtttatcattaatataaagaatccttttaaaagtaatttaatgatttacatttctcctcttttgattcaattttcttatacattttttctaccctattagttttctaaaggttgtcatgagaggtatattatggaataatttagtagtccagtgacagaatcgtatgaaatcagtgtacattttaaaaaacatgtcttttagacatatgctttatctataaaaaaggaattgtgttctagtatgaacaatactgatctggaagtgagaagagttagtttctattccaaacttgaccaagaatttggtttgactgagaacgttttcctctcagtttttgtacatttatttagagcagtggttctcagtggaggtcagttttgatcgccaggggacatctggcaatgttgagacattttggttgtcacagcttgggggtgggttcaggggagggttgctactggtgtctagtagttagaagccagagatgtttctaaacatcttataatgcacaggacagcacccctccactgtaaagaattattggttcaaaaatatcggtactgccaaggttgagaaactctgatatagaaggagtgataaatattgttttcacccaaaggaatacttttaaaggatgaagcttactaaacatatatgatggaagtattattcagataacattaatattctgctgaataattttttctagtttaatcatactagaaaaagaaaaaaaatctacaaattgtcctataaaataaggacaaacatgcaaataatttaactctcagaaagtactaattcattctgattatctttcatacctctgtgctcctctgcactgacgaagacataatatgattatacctatgaactagtgcacagccttttctggcaagaaaatagtttgtagcagatacgtggttgctctttggatttttttctattgttgaacatgctgggactagctagaatgcacattcctacttcctttaccaaacgtttgcatgcttcctgcaaagcacttaccaagtgatttctcttgaaccatcggatataattttgtatgtacatgtttgaggaaaaaaatgtaaagcaaaaccttttactgaacagtgttctatagaattatgacactaaaacaaaattgtttgtggaagccctgaaagctttatagtcctggacatcaaaaattttatttgagatgatgaatgttttgttttcatcttttcttatattaccacaattgagatattttagtaattgaaggaacatacacagatatttggcagaagtcgagtaaggaggggaaaaaaagagtccgtgagtttcagtcattttcactgctcttttcaaaaagattgtgttgagctggtagaagactaaagatgtcactgaagacatcacagatactatatttatcttttggctttgtgtacattagagaatgttgattatttttatacaaaaatacagcgggtaatttttttaatctttagatgcctcttgtttgaatgtatgctttgtggaattctttgtgtagtaatgttttaaaaaaagatgtttactgatagttacatgtaggattagaatatgtaatataatataaggctcatgttccagacctacgatagcttgtagtctatgttacgtatttctttatatcacatttttaatcattggattaaagtatcaaggaaagctaggtactctataatgagttttcatttattagcagttaatcatcatgacagaattgtcatatgcttgacttttccctcttcttggaatttcagaacacaaatacaggctaagcattagtaagagatggcccacagtatgagagagagaggtgcaacggaaaatctcgcctggaattaaaacttttcatagattatccacggttaatacaaaatttattatatggggatagactgctccagcaataatgattacatcctataactgtattacctatggcctttaaggtatcaattttgaactgtgttgtaggctctccttttatttgttctctttcctaatagcagccattctgtacttattgaaagcccctgtgcctactgctgtcttaagtattcaggaggggcttacaagagggttttctattggagaataccgtataatcttaaatctagtccagatctctgttgtccccactcaaaacatacacaaaatatgcacttgcttttttcaagtgagtttttatttaaaaatggcttgtttgctatcacattggtgcagctgtttctttcaagatgagttaatcatcttaatttcaaagcttcagctatatataatggatatatagacaacactgagcatccacctctctcctgagctttaaagcagagtttcagtatgatataggtggggagagtaaattgttttcatatcctttcatactactactaatagttttaggattttgactggggagagataatgacaaacagaaagggaacatggaggttcttcctacttttgctacctaagtttgcattttctgacttccttgcagtgttgcactctttgtcccattgggataaaaagcataagtttgaaattttgctttaagccttgtgttcctggggaagttaaacaactaagagagctgatttgtaaaaattattttttatatgacattaatattcatcaagccttgtgtaggcatgtgtaagacacagctatgcagctttgagtagtcaatatagtatgagatagagtgttgtcccaaatcctcctgtcactttttaagtagcatattatttccctgatggtcctgttactttgctgttgaatgctctaaacagaactttttaaaaggtgtgttttaagagcagtcacctaggagtagacaaggtggaatgggaggagagaaatggtaatgcaaaagcttgagcatgggaagagtcagaggaggaggccatcatccttgttagcttagcctacttcaacactgagcacatttctgcacttttgaagtgaaattcatgttttacttagaagaaataattttctttcattagggatcccagttgatttttgtttcctggtgtatcaaaatacttagaactatgaaacaagtattattgtgatcatgcctttgaataatttttgacgtagcttatcttcatgtatcaagtataaaattataatgagacatctattcacaaatacaagtcttagattgaattgaaatgtgttatagtgccctgtctcccactgacttgttcagttaaatgtcttaaagtacattatgtacatcttcaggcttttggtaccacaatggcacaagtatggtagggaggcaatatagtcttaggctatatgcctatattaagtgtgtataaacaatttttgaaagaatacactattatagatgtatgtgagtgatgctgacctgacagccatatccagtggatgaaactgactggacacactgttaaaatgttttaaagatgtattttcagccagaacagcctggttatagtttgtggttttcaccttggtggattgcaggaacacatgcagcctactggcattgagcattagctaatggcatgaaagggcctcatctcactacctctctaaggcctctagctccaagaaaaccatgaaaacttctttcttggagagatctttgtctcagaatccttagagaggatttcgtatgggggctaactttaggaagggaggcagctggggcaggactttctgatacctgacagtcatgttccagagcaacctttgggcagtggaaactggcgcatctatgcaaaatgattgctcaatctctatcttgtgtactacatatgtaactagctgggccctaaggaaggttttctagggggaaggatagggaagtagaggaggagacaagtaggaggaacaaagcattctagacccaagaggatagaagatatttaggatagatatggctttcatccatagttcaaaataatgcgttttgttagatgccagttatagcagtaaataggttatagtttttatatgtcaagatttacctgtaatcagactcattctttcactctctatacccactgtctccatgcttgggagcatggatattaatagttccagtgatgtagaagttagtgatttttgatttctgaaaaaggtgagaaccttttattacagttggagaatatttgtcaaaaattcaaaggttgttgtaattgagttgccagaattacagagtttccattttcagatatcacagttgaatcacctctgtagattgttataaagagaggcattttaagatagtattttatttgctaggttgtgtctcagtctaagaattgggaaaagaagagctataggtttctctttcctagtctggatttcagtaaacacaagcctacctctgcttctttggttcacagcagtgtggatcatgaaatgaactgtttacccacattcatcaatattggtattttacaaatctacttggagcatttaatttcatctcaaagattgtgatccactttagataagcacaaatacagtattaggaaaagtaaatatgcaatcttactaaaatttcaacttgttaagctgtatatcttaaaagaaattatttggggctgggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtagatcacctgaggtcaggagttcgagaccagcctgaccaatatggtgaaaccctatctctactaaaaacacaaaaattagctgggtgtggtggcatgcacctgtaattccagctacttgggaggctgagacaggagaattgcttgaacccaggtggtggaggttgcagtgagccaagatcacacccctgcactccagcctgggtgacagagcgagactccatctcaaaaaaacaaaacaaaaaattatttgggaagatacgtcctcttttattagaagttcataaaatgtatcatatagttttgttcacagtagttatataagctttcttcaaataaatttaaaattagattaccttctttggaaaaagaatttcctaaatttttaagaattttcaaagttttacatattagtttttagaacctaatccgttttaaaattgtactatgagaaagcttttttttgaaagttgtaaagcattaatacaaataatacaaatataattattaccatcacattccagagaatatggctttttctaaactttcaatttagaaaacatacattaagggagaatctctgccctccttttcagctctgaagatcagcttttctactcagacacatgcacacaccccttccaagtgtcatgtttatgggaacatttgggaaatgttttccagatgttttattttttcccttttatagtttgttgacatttaattttacttaaagatgacaattttaatcggaaatgttagaggtacaacatagtgaggttctagctagctttatacttttgaaaaatatttttgtttctactgctttttacaagtactagtcctctcagtgatactggtggtgttcagtatgaatccatagaaagaaaacaaaatttgttgtttaaaaaaagcagagtaatgaatgaatttcagttttgaaaacaacataatttgaaaacactgttatactaacatggcaaggtgttaattaaatataagagtaaggtagtaagttcttttagagcacctgtttaaatttactccagtaatcatcttaaggattgatagtcaccatcacttattggcttaaaagttatatttcatggaatattatcagtgttaaatccaagctttgtggagctttaagtgatggtggtgaaaaagttggtgtttatgagagagtggtggggtgtctagtcattagtgaagttaaacatcaacctgttttagaaagaattttttagtcttgcctaaagtaaaccagaagtgtctagtgtttaaatctttatttagaatgcttctcttaaaagtattttttgttttgggtagtattaaataatcagtaaataatctatttcagtagtaaataatgaattaagatgatgatgaatgaggattaacacactggtctggagactggggttttatttcagtgggttagctgtgtgtgacatgttgggcaattactcagctgttttaacagcttccagatatgcagtatggtgcctgtactactcaaaagttgattttggtttaattcatctttaaggtacctcccagctctaaaactatgattctaggctgtgtaatggggttattcctactttattctctttccttttttaagggttcattttatacttaataagcatccatttcttgggtcacctacagtctttgttctcctaaggattaaaatagaaaattcatacataacaagcaaatgatgacattttcctaaatgctccttattggttaaccactgaatatatgaacacatatgaatattgtcattcatgtacttaaattcatttagcaaactatttgaacacttacatgtgcagtgtttggtgaacatgacatgaggaactagtagtaagtaaaatcttccccccaaaattcattgtggcttaaataaatatgaacataatcattactacttaatatactgagagggaatcttaataaacttggaactgggagggaatatttgtatacattgggtaaagggttaggctagatgacatctaaggggtctgagtgaatcatatcataatttttataacacatttcacatactaaacatcagttggccccatacctgattaagttacaaaatttaggagacttaacattaaggacttacaggttgagacagcccgtatttcacaacattattttgacacttgactctattccagagttgttgctatacaaggcatgtggcagaacaaaaaaaaagctggtgttgatataagagctttttacccagtattgacagtgagcaactttctttctttttttttttttttcttttttttttttttgagatgggttcgctctgttgcccaggctggtgtgcagtggtgcgatctcagctcactgcaacctccacctcccgggttgaagcgattgtcttgcctcagccttccaagtagctggaattacaggtgcccgccgccacacctggctaatttttgtatttttagtagagacggggcttcaccatgttggccaggctagtctcgaactcttgacctcaagtgatccacctgccttggcctccctaagtgctgggattacaggcatgagccaccacacctgtccgacagtgtagcaactttctaaaactgaaaaatctcaaaggagatcattggaactgacttgttcatttattttttgtttttaaattaagaaagattacacaaaataagtgttactgtactttaagctattacaaatatccaacttttaaagatatgtaagaatcagtaatattctagaaagcacatatatagtaaaagggcatcctttaaatgtagaacgggtaaacatgaaacagttccatgcttgaattgttaagtatctagggggtaaacattgaatgggagaatcatttattgggttaaggtcccttccttgtcattctgggatctgtgaatcacattgtaattcctgttgacaaagctttacttgttaacatcagttgatactgacattctccataaagatatagaatgaaaatatctattaaaaatagtttatcattgttttagcttttttgttttgtttgttttgagacagagtctcactgtcacccaggcttgagtgcagcggtgtgatcttggctcaatgcaacctccacctcccaggttcaatagattctcccaccttggcctcccaagtagctgggattactggcatgcaccactatgcctggccagttttttgtatttttagtagagatggggtttcaccatgttggccaggctggactcgaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgccgggattataggcatgagccactgcgcctagcctgttgcagctttttaaagcaggaaaatatccatataaactgttgggttagaatctatattagaatctttcaaactaattgaaaacaggaagactatcatctaagtagccagataatctgggtttcaaaaagttattccatggtactggtttaaaaaatacttttcaagtgttttaatttttaaagtgtaactaattcttcaaatatgttatgctgttaaaatatgtattccataagtactttttgtatatgtattcttaaattttaaaaagtcaactgaatgcgcaaagatgatataattttggatgtagacatttaaactagattcccagtcctctccttcaaaagcttggtctttgtttttcctatagggaaaaaagtcaaaataagttccaaaaactatcctcaaagtagtattgtgcttgtagtaaatgaaggttggatggatggatactgacaatggtggcaggcatttcaagccttttaaattagtactttttgtcgtcttgcttattaaaattttgttaattttagcaaagaccaattgttgtgataaactggtgttttttggatgcttcaagcacacgttaaccaattttttaattccccttttggttcctcccattgttctaaaataggactttcatattattaaaacctcaaaagatgatccacccaggatgaacaaagatcaccaaggggaaagaaaacattttttatctttacagaaaacatgttaagattatatatagatgtattctttacattggatattgtattagagtcctccttacaagaaatgaaatagtttttagcactcttagcattagagttcctagattggtgttgatagctacagttttaaaatgtataacctgaaaatgaaggttaattttgcattgtaagagcacatttgatctatgtaaaaagtgtccatttggtgtatttttttaaaaaagagaaagcactttcatattaagtagcatgtgtatgaatttagattttcatatttgttgtgtctgtattcagtgaagtaaattgagcatttaaatgtttgttgatggcaacattaactattaaattaaagcaccttatactctgctgcttaacttgcttgtaattgcacctttgttacctgcacattttcatatagaatattgttgtaacattgcttcatgtgggtctggatggaagattagtgggcctacaggatcatttatttatattgtttatattacaataatatattgtagatcagttgtaagttcatttctttacaaataaaagcctcttccatttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]