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Previous release (v1)
2024-04-28 08:04:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001406516 6837 bp mRNA linear PRI 12-DEC-2023
DEFINITION Homo sapiens ATPase copper transporting beta (ATP7B), transcript
variant 11, mRNA.
ACCESSION NM_001406516
VERSION NM_001406516.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6837)
AUTHORS Ruturaj, Mishra M, Saha S, Maji S, Rodriguez-Boulan E, Schreiner R
and Gupta A.
TITLE Regulation of the apico-basolateral trafficking polarity of the
homologous copper-ATPases ATP7A and ATP7B
JOURNAL J Cell Sci 137 (5) (2024)
PUBMED 38032054
REMARK GeneRIF: Regulation of the apico-basolateral trafficking polarity
of the homologous copper-ATPases ATP7A and ATP7B.
REFERENCE 2 (bases 1 to 6837)
AUTHORS Gorukmez O, Ozgur T, Gorukmez O and Topak A.
TITLE ATP7B Gene Variant Profile Identified by NGS in Wilson's Disease
JOURNAL Fetal Pediatr Pathol 42 (6), 891-900 (2023)
PUBMED 37737146
REMARK GeneRIF: ATP7B Gene Variant Profile Identified by NGS in Wilson's
Disease.
REFERENCE 3 (bases 1 to 6837)
AUTHORS Chakraborty K, Das S, Pal A, Maji S, Rai B, Gupta A and
Bhattacharjee A.
TITLE Wilson disease-causing mutations in the carboxyl terminus of ATP7B
regulates its localization and Golgi exit selectively in the
unpolarized cells
JOURNAL Metallomics 15 (9) (2023)
PUBMED 37660282
REMARK GeneRIF: Wilson disease-causing mutations in the carboxyl terminus
of ATP7B regulates its localization and Golgi exit selectively in
the unpolarized cells.
REFERENCE 4 (bases 1 to 6837)
AUTHORS Xue Z, Chen H, Yu L and Jiang P.
TITLE A Systematic Review and Meta-Analysis of the R778L Mutation in
ATP7B With Wilson Disease in China
JOURNAL Pediatr Neurol 145, 135-147 (2023)
PUBMED 37354629
REMARK GeneRIF: A Systematic Review and Meta-Analysis of the R778L
Mutation in ATP7B With Wilson Disease in China.
REFERENCE 5 (bases 1 to 6837)
AUTHORS Petrukhin K, Lutsenko S, Chernov I, Ross BM, Kaplan JH and Gilliam
TC.
TITLE Characterization of the Wilson disease gene encoding a P-type
copper transporting ATPase: genomic organization, alternative
splicing, and structure/function predictions
JOURNAL Hum Mol Genet 3 (9), 1647-1656 (1994)
PUBMED 7833924
REFERENCE 6 (bases 1 to 6837)
AUTHORS Petrukhin K, Fischer SG, Pirastu M, Tanzi RE, Chernov I, Devoto M,
Brzustowicz LM, Cayanis E, Vitale E, Russo JJ et al.
TITLE Mapping, cloning and genetic characterization of the region
containing the Wilson disease gene
JOURNAL Nat Genet 5 (4), 338-343 (1993)
PUBMED 8298640
REFERENCE 7 (bases 1 to 6837)
AUTHORS Bull PC, Thomas GR, Rommens JM, Forbes JR and Cox DW.
TITLE The Wilson disease gene is a putative copper transporting P-type
ATPase similar to the Menkes gene
JOURNAL Nat Genet 5 (4), 327-337 (1993)
PUBMED 8298639
REMARK Erratum:[Nat Genet 1994 Feb;6(2):214]
REFERENCE 8 (bases 1 to 6837)
AUTHORS Yamaguchi Y, Heiny ME and Gitlin JD.
TITLE Isolation and characterization of a human liver cDNA as a candidate
gene for Wilson disease
JOURNAL Biochem Biophys Res Commun 197 (1), 271-277 (1993)
PUBMED 8250934
REFERENCE 9 (bases 1 to 6837)
AUTHORS Weiss,K.H. and Schilsky,M.
TITLE Wilson Disease
JOURNAL (in) Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH,
Gripp KW and Amemiya A (Eds.);
GENEREVIEWS(R);
(1993)
PUBMED 20301685
REFERENCE 10 (bases 1 to 6837)
AUTHORS Klein,C., Lohmann,K., Marras,C. and Munchau,A.
TITLE Hereditary Dystonia Overview
JOURNAL (in) Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH,
Gripp KW and Amemiya A (Eds.);
GENEREVIEWS(R);
(1993)
PUBMED 20301334
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AL139082.18, AL138821.12 and
AL162377.10.
Summary: This gene is a member of the P-type cation transport
ATPase family and encodes a protein with several membrane-spanning
domains, an ATPase consensus sequence, a hinge domain, a
phosphorylation site, and at least 2 putative copper-binding sites.
This protein is a monomer, and functions as a copper-transporting
ATPase which exports copper out of the cells, such as the efflux of
hepatic copper into the bile. Alternate transcriptional splice
variants, encoding different isoforms with distinct cellular
localizations, have been characterized. Mutations in this gene have
been associated with Wilson disease which is characterized by
copper accumulation. [provided by RefSeq, Dec 2019].
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14038191.1873329.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMEA1965299,
SAMEA1966682 [ECO:0006172]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-352 AL139082.18 30120-30471 c
353-457 AL139082.18 29750-29854 c
458-1691 AL138821.12 33967-35200 c
1692-1949 AL138821.12 30524-30781 c
1950-2113 AL138821.12 28476-28639 c
2114-2275 AL138821.12 24904-25065 c
2276-2352 AL138821.12 21869-21945 c
2353-2527 AL138821.12 20180-20354 c
2528-2761 AL138821.12 18343-18576 c
2762-2853 AL138821.12 17548-17639 c
2854-2981 AL138821.12 10304-10431 c
2982-3136 AL138821.12 10039-10193 c
3137-3217 AL138821.12 9748-9828 c
3218-3412 AL138821.12 6316-6510 c
3413-3595 AL138821.12 4141-4323 c
3596-3764 AL138821.12 2418-2586 c
3765-3908 AL138821.12 1113-1256 c
3909-4051 AL162377.10 168087-168229 c
4052-4255 AL162377.10 166512-166715 c
4256-4373 AL162377.10 166312-166429 c
4374-4476 AL162377.10 164629-164731 c
4477-6837 AL162377.10 161705-164065 c
FEATURES Location/Qualifiers
source 1..6837
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="13"
/map="13q14.3"
gene 1..6837
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="ATPase copper transporting beta"
/db_xref="GeneID:540"
/db_xref="HGNC:HGNC:870"
/db_xref="MIM:606882"
exon 1..352
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
misc_feature 197..199
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="upstream in-frame stop codon"
exon 353..457
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
CDS 407..4750
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/EC_number="7.2.2.8"
/note="isoform h is encoded by transcript variant 11;
copper-transporting ATPase 2; copper pump 2; ATPase, Cu++
transporting, beta polypeptide; Wilson disease-associated
protein; ATPase, Cu(2+)- transporting, beta polypeptide;
copper-transporting protein ATP7B"
/codon_start=1
/product="copper-transporting ATPase 2 isoform h"
/protein_id="NP_001393445.1"
/db_xref="GeneID:540"
/db_xref="HGNC:HGNC:870"
/db_xref="MIM:606882"
/translation="
MPEQERQITAREGASRKILSKLSLPTRAWEPAMKKSFAFDNVGYEGGLDGLGPSSQVATSTVRILGMTCQSCVKSIEDRISNLKGIISMKVSLEQGSATVKYVPSVVCLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKSKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNNSETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASVVSESCSTNPLGNHSAGNSMVQTTDGTPTSVQEVAPHTGRLPANHAPDILAKSPQSTRAVAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAHHLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHQSMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHLAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPIGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAHGHMKPLTASQVSVHIGMDDRWRDSPRATPWDQVSYVSQVSLSSLTSDKPSRHSAAADDDGDKWSLLLNGRDEEQYI"
misc_feature 473..475
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (P35670.4); phosphorylation site"
misc_feature 587..778
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(605..613,620..622)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 842..1033
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(860..868,875..877)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 1094..1153
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1184..1360
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(1202..1210,1217..1219)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 1370..1471
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1493..1681
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(1508..1516,1523..1525)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 1838..1840
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (P35670.4); phosphorylation site"
misc_feature 1847..1849
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q64535; propagated from
UniProtKB/Swiss-Prot (P35670.4); phosphorylation site"
misc_feature 1880..2068
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(1895..1903,1910..1912)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 2105..2296
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:238219"
misc_feature order(2123..2131,2138..2140)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature 2360..4414
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="P-type heavy metal-transporting ATPase, similar to
human copper-transporting ATPases, ATP7A and ATP7B;
Region: P-type_ATPase_Cu-like; cd02094"
/db_xref="CDD:319783"
misc_feature 2366..2431
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 2498..2557
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 2579..2641
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 2699..2761
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 3269..3334
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature order(3299..3301,3305..3307,4343..4345)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="putative Cu binding site [ion binding]; other site"
/db_xref="CDD:319783"
misc_feature order(3431..3439,3641..3643,3794..3802,3890..3892,
4010..4018,4076..4078,4085..4087,4094..4096,4151..4153,
4160..4162)
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:319783"
misc_feature 4319..4372
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 4406..4465
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="propagated from UniProtKB/Swiss-Prot (P35670.4);
transmembrane region"
misc_feature 4544..4546
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q64535; propagated from
UniProtKB/Swiss-Prot (P35670.4); phosphorylation site"
exon 458..1691
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 1692..1949
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 1950..2113
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2114..2275
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2276..2352
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2353..2527
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2528..2761
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2762..2853
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2854..2981
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 2982..3136
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3137..3217
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3218..3412
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3413..3595
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3596..3764
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3765..3908
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 3909..4051
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 4052..4255
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 4256..4373
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 4374..4476
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
exon 4477..6837
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/inference="alignment:Splign:2.1.0"
regulatory 6810..6815
/regulatory_class="polyA_signal_sequence"
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="hexamer: AATAAA"
polyA_site 6837
/gene="ATP7B"
/gene_synonym="PWD; WC1; WD; WND"
/note="major polyA site"
ORIGIN
actcttgccgcggttgcttcctttgggacccacggcgtccggcagccaggcgcagagtccgaggagggggcagcgcagagcggacccgacgcggcgccgccgggcaccttccccgcaggcggtgggtgagccctgggagctgagtctgcggcccggctctgcgcagctcacctgccctcccgctcccgcacacgcgtgagatcccagtacagtgtcggagcgcaccagcgcgaggtggccgagaccgcggaggaggacaggcctccgccctgcggcgccggcacggcagaggacattgtggcactggcacggcagagaacactgtggcaccggcggggccggcagttccagggtgaccttttgctctgagccagatcagagaagaattcggtgtccgtgcgggacgatgcctgagcaggagagacagatcacagccagagaaggggccagtcggaaaatcttatctaagctttctttgcctacccgtgcctgggaaccagcaatgaagaagagttttgcttttgacaatgttggctatgaaggtggtctggatggcctgggcccttcttctcaggtggccaccagcacagtcaggatcttgggcatgacttgccagtcatgtgtgaagtccattgaggacaggatttccaatttgaaaggcatcatcagcatgaaggtttccctggaacaaggcagtgccactgtgaaatatgtgccatcggttgtgtgcctgcaacaggtttgccatcaaattggggacatgggcttcgaggccagcattgcagaaggaaaggcagcctcctggccctcaaggtccttgcctgcccaggaggctgtggtcaagctccgggtggagggcatgacctgccagtcctgtgtcagctccattgaaggcaaggtccggaaactgcaaggagtagtgagagtcaaagtctcactcagcaaccaagaggccgtcatcacttatcagccttatctcattcagcccgaagacctcagggaccatgtaaatgacatgggatttgaagctgccatcaagagcaaagtggctcccttaagcctgggaccaattgatattgagcggttacaaagcactaacccaaagagacctttatcttctgctaaccagaattttaataattctgagaccttggggcaccaaggaagccatgtggtcaccctccaactgagaatagatggaatgcattgtaagtcttgcgtcttgaatattgaagaaaatattggccagctcctaggggttcaaagtattcaagtgtccttggagaacaaaactgcccaagtaaagtatgacccttcttgtaccagcccagtggctctgcagagggctatcgaggcacttccacctgggaattttaaagtttctcttcctgatggagccgaagggagtgggacagatcacaggtcttccagttctcattcccctggctccccaccgagaaaccaggtccagggcacatgcagtaccactctgattgccattgccggcatgacctgtgcatcctgtgtccattccattgaaggcatgatctcccaactggaaggggtgcagcaaatatcggtgtctttggccgaagggactgcaacagttctttataatccctctgtaattagcccagaagaactcagagctgctatagaagacatgggatttgaggcttcagtcgtttctgaaagctgttctactaaccctcttggaaaccacagtgctgggaattccatggtgcaaactacagatggtacacctacatctgtgcaggaagtggctccccacactgggaggctccctgcaaaccatgccccggacatcttggcaaagtccccacaatcaaccagagcagtggcaccgcagaagtgcttcttacagatcaaaggcatgacctgtgcatcctgtgtgtctaacatagaaaggaatctgcagaaagaagctggtgttctctccgtgttggttgccttgatggcaggaaaggcagagatcaagtatgacccagaggtcatccagcccctcgagatagctcagttcatccaggacctgggttttgaggcagcagtcatggaggactacgcaggctccgatggcaacattgagctgacaatcacagggatgacctgcgcgtcctgtgtccacaacatagagtccaaactcacgaggacaaatggcatcacttatgcctccgttgcccttgccaccagcaaagcccttgttaagtttgacccggaaattatcggtccacgggatattatcaaaattattgaggaaattggctttcatgcttccctggcccagagaaaccccaacgctcatcacttggaccacaagatggaaataaagcagtggaagaagtctttcctgtgcagcctggtgtttggcatccctgtcatggccttaatgatctatatgctgatacccagcaacgagccccaccagtccatggtcctggaccacaacatcattccaggactgtccattctaaatctcatcttctttatcttgtgtacctttgtccagctcctcggtgggtggtacttctacgttcaggcctacaaatctctgagacacaggtcagccaacatggacgtgctcatcgtcctggccacaagcattgcttatgtttattctctggtcatcctggtggttgctgtggctgagaaggcggagaggagccctgtgacattcttcgacacgccccccatgctctttgtgttcattgccctgggccggtggctggaacacttggcaaagagcaaaacctcagaagccctggctaaactcatgtctctccaagccacagaagccaccgttgtgacccttggtgaggacaatttaatcatcagggaggagcaagtccccatggagctggtgcagcggggcgatatcgtcaaggtggtccctgggggaaagtttccagtggatgggaaagtcctggaaggcaataccatggctgatgagtccctcatcacaggagaagccatgccagtcactaagaaacccggaagcactgtaattgcggggtctataaatgcacatggctctgtgctcattaaagctacccacgtgggcaatgacaccactttggctcagattgtgaaactggtggaagaggctcagatgtcaaaggcacccattcagcagctggctgaccggtttagtggatattttgtcccatttatcatcatcatgtcaactttgacgttggtgaaccccaacaagcacatctcccagacagaggtgatcatccggtttgctttccagacgtccatcacggtgctgtgcattgcctgcccctgctccctggggctggccacgcccacggctgtcatggtgggcaccggggtggccgcgcagaacggcatcctcatcaagggaggcaagcccctggagatggcgcacaagataaagactgtgatgtttgacaagactggcaccattacccatggcgtccccagggtcatgcgggtgctcctgctgggggatgtggccacactgcccctcaggaaggttctggctgtggtggggactgcggaggccagcagtgaacaccccttgggcgtggcagtcaccaaatactgtaaagaggaacttggaacagagaccttgggatactgcacggacttccaggcagtgccaggctgtggaattgggtgcaaagtcagcaacgtggaaggcatcctggcccacagtgagcgccctttgagtgcaccggccagtcacctgaatgaggctggcagccttcccgcagaaaaagatgcagtcccccagaccttctctgtgctgattggaaaccgtgagtggctgaggcgcaacggtttaaccatttctagcgatgtcagtgacgctatgacagaccacgagatgaaaggacagacagccatcctggtggctattgacggtgtgctctgtgggatgatcgcaatcgcagacgctgtcaagcaggaggctgccctggctgtgcacacgctgcagagcatgggtgtggacgtggttctgatcacgggggacaaccggaagacagccagagctattgccacccaggttggcatcaacaaagtctttgcagaggtgctgccttcgcacaaggtggccaaggtccaggagctccagaataaagggaagaaagtcgccatggtgggggatggggtcaatgactccccggccttggcccaggcagacatgggtgtggccattggcaccggcacggatgtggccatcgaggcagccgacgtcgtccttatcagaaatgatttgctggatgtggtggctagcattcacctttccaagaggactgtccgaaggatacgcatcaacctggtcctggcactgatttataacctggttgggatacccattgcagcaggtgtcttcatgcccatcggcattgtgctgcagccctggatgggctcagcggccatggcagcctcctctgtgtctgtggtgctctcatccctgcagctcaagtgctataagaagcctgacctggagaggtatgaggcacaggcgcatggccacatgaagcccctgacggcatcccaggtcagtgtgcacataggcatggatgacaggtggcgggactcccccagggccacaccatgggaccaggtcagctatgtcagccaggtgtcgctgtcctccctgacgtccgacaagccatctcggcacagcgctgcagcagacgatgatggggacaagtggtctctgctcctgaatggcagggatgaggagcagtacatctgatgacttcaggcaggcgggccggggcagggacttgcctccactcaccacaagctgagcaggacagccagcagcaggatgggctgagctagcctccagctttggggacttccgctccctggatatgtccagtcatcctgccctgcagcacgcggccttgtctgggtgcagctgggcttggcctggagaggacggccctgcctgcctcttggcctcacgggaccgtcagcatgggctttgtcttggactctagtccttggctggactgtagaaggtgagaggcgagtcaccctcctcacagacctctgcttggagtatttaggatgactgctgtgaaatggagaacagtttcatcaggaccaaaaaacctcactgggcctttccagagaactgcagacctcactgtcagggtctttctgatgacgcctgtctgtgtgcatcatgtttctgagaccacagtttacctcaggtgtgcctgttgctttcttcctgcatagtctgttcctttcttcgtacatagtctgttccttttctctcctgtgtgcttgtcagtggggacccctcgcaaccctgcctgtcacctgggagggtgggaccaatgtccttgtggtctttgctgctgctctcaggcgcttctccaatgctctggagtgtgcatttcagcttgaacctgcttcctggctcacacatccccagccagggagcttgccacactcttcttcaagttgaggagagttcttttttgcttaaagcccccttctccatggagtgttggcttctcaatagagtgttgttgctgaccagctggagtgagggcctcagagcctgacctgagagtccgtactcggcttcctgtggggtgtaggttctcgcgattcaggacgtccttccatatccctgcccagcctgtggtgcttgaaacgtttgccccatgggaaacgtatgtgtgcaggagcctccctgcacggcccaaggggcttcgttttcagtcttctgactgtcacctcgtggggttcagtagagaattcatgtgactagcgcctggccttgtgtggcttggaggaaatggtactgcccaaataggaggaaaacacagcctccctgagcctgcattctgcacgctgcccaggggcttcagaaaaggagtggccacagcaccccgaagggagcatctgtttacctggcagtggctctcagagcagcagaacgggttcagttttagactctgaagttggttgtgattgacagaaccctttgggagcaaactagtagagttggattaaattctgggtgaaacccttttctcccacacaaaatagttttagtgatttttttcattgtccattacttgccaggggcagttttagcagcacttttgatagattacgtctaatcctcccaaccaaccagcagggtagctattactgtccacattttacaggcaaggaaacaggctccaagaggctgaggactttgcccaggatgacatagccaatggacaagcagtgtctgtcagctgtgaaggcttcactcttattgtccttctaccttgaatagaagttttcctgataagaataaacgaggaaaaggtccttgcctcctggaagaacaaatctaccaggtgatctattcattgtttcaactcagaatgcacttgattcaggaggtcatctgaccttcaccttggatggttagtttcactttttacatatagtttttgcagggttttattttataaaatccaagcgcgctgttgattgtgttttccttgttttcagcccccccactccagcccgcagcacatttccgctgtccgtcagtaattgtgtcctctctttatgcttgcttggggaatgttgttttctgactaggctgatcattatctaaagaatctaattctgttgatttttaaaacttttaggaccataaacgttgtgttcatatatggacatggaaatatttatataattttatagaaaataaccttttagatggtcaaagtgtaaggagtttttttgtcagataatcatttctacttcaaaaacatttcatgcaatattagaataaagttcctgtcattcctctaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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