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Previous release (v1)
2024-05-01 20:25:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001371884 831 bp mRNA linear PRI 28-DEC-2022
DEFINITION Homo sapiens testis expressed 48 (TEX48), transcript variant 4,
mRNA.
ACCESSION NM_001371884
VERSION NM_001371884.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 831)
AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall
R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG,
Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF,
Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC,
Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A,
Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG,
Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S,
Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A,
Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van
Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S,
Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli
D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V,
Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X,
Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S,
Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood
MA.
TITLE A reference map of the human binary protein interactome
JOURNAL Nature 580 (7803), 402-408 (2020)
PUBMED 32296183
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL160275.14.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: SRR5189667.83415.1 [ECO:0000332]
RNAseq introns :: partial sample support SAMEA2151119,
SAMEA2158188 [ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-158 AL160275.14 156351-156508 c
159-266 AL160275.14 146036-146143 c
267-386 AL160275.14 145699-145818 c
387-518 AL160275.14 142522-142653 c
519-831 AL160275.14 140750-141062 c
FEATURES Location/Qualifiers
source 1..831
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="9"
/map="9q32"
gene 1..831
/gene="TEX48"
/note="testis expressed 48"
/db_xref="GeneID:100505478"
/db_xref="HGNC:HGNC:52393"
exon 1..158
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 1
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216950"
variation 3
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:755023784"
variation 4
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:969570404"
variation 5
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133771273"
variation 6..8
/gene="TEX48"
/replace="a"
/replace="aca"
/db_xref="dbSNP:1265652743"
variation 6
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1435964771"
variation 7..38
/gene="TEX48"
/replace="cag"
/replace="cagtctggtggccagcatggcatcgtgctcag"
/db_xref="dbSNP:1828215820"
variation 7
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:546010637"
variation 8
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1828216573"
variation 9
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828216496"
variation 13
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828216413"
variation 17
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1554765273"
variation 18
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133771255"
variation 20
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216260"
variation 22
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216180"
variation 24
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1238147793"
variation 26
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1439776287"
variation 29
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:771344893"
variation 30
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1391799607"
variation 31
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1828215960"
variation 34
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215898"
variation 39
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:887338122"
variation 44..48
/gene="TEX48"
/replace="ct"
/replace="cttct"
/db_xref="dbSNP:1451419525"
variation 44
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1047306771"
variation 49
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1167598993"
variation 52
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215454"
variation 53
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1458694261"
variation 57
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828215315"
variation 59
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215136"
variation 61
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1253247985"
variation 63
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:895469195"
variation 64
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214916"
variation 70
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1176288992"
variation 71
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:998726967"
variation 72
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214790"
variation 74
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1157487884"
variation 76
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828214650"
variation 77
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:901333826"
variation 81
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214491"
variation 82
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828214405"
variation 83
/gene="TEX48"
/replace=""
/replace="t"
/db_xref="dbSNP:942787047"
variation 83
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1075372"
variation 85
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214068"
variation 88
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828214013"
variation 90
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:374680641"
variation 92
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1326822723"
variation 93
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:778260277"
variation 97
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1397031384"
variation 98
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:370976615"
variation 99
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828213586"
variation 102
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1444628657"
variation 103
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1075371"
variation 104
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828213292"
variation 105
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1828213214"
variation 107
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133771152"
variation 108
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1336463915"
variation 118
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:906037111"
variation 128
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828212996"
variation 129
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1467349173"
variation 133
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828212841"
variation 135
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1043194019"
variation 136
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:2133771134"
variation 139
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133771132"
variation 148
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1255090269"
variation 157
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133771125"
variation 158
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1214785582"
exon 159..266
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 163
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:544101322"
variation 166
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:199890976"
variation 169
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1451067377"
variation 171
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827954049"
variation 172
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827954002"
variation 176
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:181740024"
variation 177
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1248933054"
variation 180
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:938187434"
variation 181
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1400430611"
variation 182
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827953751"
variation 184
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:925436732"
variation 187
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1413092151"
variation 195
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1827953601"
variation 200
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827953546"
variation 201
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1459164098"
variation 203
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827953322"
variation 204
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827953267"
variation 205
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1386906176"
variation 215
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1289902862"
variation 216..222
/gene="TEX48"
/replace="cacccct"
/replace="cacccctcacccct"
/db_xref="dbSNP:1827952887"
variation 216
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1388164374"
variation 218..221
/gene="TEX48"
/replace="cccc"
/replace="ccccc"
/db_xref="dbSNP:1564316273"
variation 218
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1221961685"
variation 219
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:921066228"
variation 223..240
/gene="TEX48"
/replace="gcaga"
/replace="gcagacaaagctggcaga"
/db_xref="dbSNP:1339377912"
variation 224
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:564838622"
variation 225
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827952066"
variation 226
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133759575"
variation 228
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1323687263"
variation 233
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1275476904"
variation 235
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:980008750"
variation 236
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:545077729"
variation 237
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:751564653"
variation 240
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287664648"
misc_feature 242..244
/gene="TEX48"
/note="upstream in-frame stop codon"
variation 243
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827951724"
variation 244
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:935707973"
variation 245
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827951620"
variation 248
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827951562"
variation 249
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1406290610"
variation 261
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1343053623"
CDS 263..622
/gene="TEX48"
/note="isoform 2 is encoded by transcript variant 4;
testis-expressed protein 48"
/codon_start=1
/product="testis-expressed protein 48 isoform 2"
/protein_id="NP_001358813.1"
/db_xref="GeneID:100505478"
/db_xref="HGNC:HGNC:52393"
/translation="
MAHQNLILKIFCLCCRDCQEPYAINDSKVPSQTQEHKPSTQNLLLQKDELDRQNPKRINAVSHLPSRTPLIQTKKSTSSSSSEFEDLNAYASQRNFYKRNLNRYCQEHWPFQPCLTGRP"
variation 264
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1302157994"
exon 267..386
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 267
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945621"
variation 269
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945543"
variation 274
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133759285"
variation 280
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:997141336"
variation 282
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945426"
variation 283
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1338637052"
variation 285
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:759915694"
variation 286
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1564316170"
variation 287
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1428512949"
variation 288
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:145810678"
variation 291..296
/gene="TEX48"
/replace="tct"
/replace="tcttct"
/db_xref="dbSNP:1401151518"
variation 292
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1463515775"
variation 293
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1301027842"
variation 302
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1396426038"
variation 306
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:899749982"
variation 307
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1827944805"
variation 310
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944742"
variation 311
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:933987898"
variation 313
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827944619"
variation 314
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1419726341"
variation 315
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:557924595"
variation 319
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944500"
variation 320
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944440"
variation 321
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1054660664"
variation 322
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1227725026"
variation 323
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1175665385"
variation 326
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:757465416"
variation 327
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:113359630"
variation 328
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1205958390"
variation 332
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827943981"
variation 344
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133759176"
variation 345
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1460414738"
variation 348
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1231632332"
variation 349
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:754361450"
variation 350
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1255921250"
variation 351
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1464981702"
variation 356
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:565817649"
variation 360
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1377480467"
variation 361
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827943538"
variation 364
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2296948"
variation 366
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1205991199"
variation 367
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1318155053"
variation 368
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827943192"
variation 370
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827943138"
variation 373
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:535814739"
variation 378
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:188157892"
variation 379
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:909938189"
variation 382
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:550813108"
variation 384
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390194184"
variation 385
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:991190160"
exon 387..518
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 389
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:2133756227"
variation 393
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1359992"
variation 399
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:928225343"
variation 401..402
/gene="TEX48"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1827880703"
variation 403
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133756204"
variation 404
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827880635"
variation 405
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1359784378"
variation 409
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1452914024"
variation 410
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:981454432"
variation 413
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:969580762"
variation 417
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1017148265"
variation 423
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827880266"
variation 425
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1243553029"
variation 431
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1339613775"
variation 432
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:903423606"
variation 434
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1040422079"
variation 439
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:556323205"
variation 440
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:910651353"
variation 441
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1402082523"
variation 443
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827879873"
variation 445
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827879818"
variation 449
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:777468715"
variation 450
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287244743"
variation 451
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1392636139"
variation 452
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:998207581"
variation 455
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1159612263"
variation 456
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827879446"
variation 459
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:78332732"
variation 460
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:772022288"
variation 464
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1018863117"
variation 465
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1423150644"
variation 469
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1564315284"
variation 470..471
/gene="TEX48"
/replace=""
/replace="ct"
/db_xref="dbSNP:1827879024"
variation 471
/gene="TEX48"
/replace=""
/replace="t"
/db_xref="dbSNP:1158278021"
variation 471
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:930742031"
variation 475
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:373767666"
variation 477
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827878768"
variation 480
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:2296947"
variation 481..486
/gene="TEX48"
/replace="aaaaaa"
/replace="aaaaaaa"
/db_xref="dbSNP:1260244729"
variation 481
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1589375239"
variation 487
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827878438"
variation 488
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1192364904"
variation 492
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133756077"
variation 493
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:761273255"
variation 495
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827878250"
variation 496
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1270641485"
variation 500
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133756062"
variation 503
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1219739616"
variation 506
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:746668634"
variation 507
/gene="TEX48"
/replace=""
/replace="g"
/db_xref="dbSNP:1229317437"
variation 507
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1043545448"
variation 511
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1200052556"
variation 513
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1305741410"
variation 515
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827877741"
variation 518
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1010589138"
exon 519..831
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 519
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133754380"
variation 520
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1197375385"
variation 523
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1461649745"
variation 526
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:16930732"
variation 529
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1257369549"
variation 532
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1223980673"
variation 534
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754344"
variation 536
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:140513600"
variation 538
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827849125"
variation 542
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1285349144"
variation 548
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1375215354"
variation 549
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:866099220"
variation 551
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827848892"
variation 560
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:895206482"
variation 561
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1231143650"
variation 562
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1312260747"
variation 563
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827848626"
variation 564
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1335652788"
variation 567
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133754307"
variation 568..569
/gene="TEX48"
/replace="cc"
/replace="ccc"
/db_xref="dbSNP:148105030"
variation 568
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1235377735"
variation 569
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:190530784"
variation 570
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1034208598"
variation 571
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827848270"
variation 579
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:775353840"
variation 582
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1393534289"
variation 583
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1053159251"
variation 584
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827848050"
variation 585
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1055207"
variation 590
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754255"
variation 591
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:928690363"
variation 593
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827847760"
variation 601
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827847719"
variation 602
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1425586051"
variation 603
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827847614"
variation 609..610
/gene="TEX48"
/replace=""
/replace="ct"
/db_xref="dbSNP:1166667646"
variation 609
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:765863737"
variation 613..614
/gene="TEX48"
/replace=""
/replace="c"
/db_xref="dbSNP:1408902796"
variation 613
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:949335728"
variation 615
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:916395944"
variation 616
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:746084773"
variation 617
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:945697069"
variation 618
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754206"
variation 620
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1301977292"
variation 621
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1432082458"
variation 624
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133754189"
variation 629
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827847060"
variation 631
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827847001"
variation 633
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:547207700"
variation 634
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:530170660"
variation 635
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1364046878"
variation 636
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:760370212"
variation 637
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:185674825"
variation 641
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1237268659"
variation 645
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1486884274"
variation 646
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1204053006"
variation 649
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1462642922"
variation 650
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:972548176"
variation 652
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1198842009"
variation 653
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133754132"
variation 654
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1344350278"
variation 655
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1280385164"
variation 663
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1241383909"
variation 664
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1375156856"
variation 665
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:931780255"
variation 673
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:921660214"
variation 674
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:961327779"
variation 675
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1172961257"
variation 676
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1486426224"
variation 677
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:550723839"
variation 681
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827845525"
variation 684
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1008856181"
variation 685
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1360197886"
variation 690
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1431773032"
variation 691
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:114247676"
variation 696
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827845087"
variation 702
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827845020"
variation 704
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:942174904"
variation 705
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1306119963"
variation 714
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1304857134"
variation 719..726
/gene="TEX48"
/replace="aggag"
/replace="aggaggag"
/db_xref="dbSNP:1827844518"
variation 721
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844681"
variation 722
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844596"
variation 726
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1350497036"
variation 731
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1214977790"
variation 732
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:77521529"
variation 736
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827844304"
variation 739
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:983630849"
variation 749
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827844159"
variation 757
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827844092"
variation 760
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844035"
variation 762
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:970953021"
variation 768
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1216104414"
variation 771
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1243295579"
variation 779
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1589374349"
variation 780
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1476784707"
variation 790
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1564314688"
variation 792
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1395689667"
variation 793
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827843369"
variation 795
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:181552382"
variation 796
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827843210"
variation 799
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:761616377"
variation 804
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1156554199"
variation 807
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1053127192"
regulatory 808..813
/regulatory_class="polyA_signal_sequence"
/gene="TEX48"
/note="hexamer: ATTAAA"
variation 808
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:998981472"
variation 809
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1320586086"
variation 815
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827842772"
variation 821
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827842705"
variation 822
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:532261876"
variation 823
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:774228975"
variation 825
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1307644725"
variation 828
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1327146507"
polyA_site 831
/gene="TEX48"
/note="major polyA site"
variation 831
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:959500785"
ORIGIN
agtatacagtctggtggccagcatggcatcgtgctcagcagaacttctccctcctcctcgctgttgtggtccagtccaaacatcccagccccaacattccctggttccccagctctgtgacatcacagacagccttctgtctactctgccagctgcaggaaacagcccagcccagtgaactgggctcaaactcaagactggctgattcaacaaggcacccctgcagacaaagctggcagagtagaagtttcaactcctttccatggcccaccaaaacctgatcttgaagatcttctgtttatgctgcagggactgtcaggagccctatgccatcaatgactccaaggttcccagtcaaacccaggagcacaagccatcgacccaaaatttgctgcttcagaaggatgagcttgacagacaaaatcccaagcgcattaacgcagtctcccatttgccttcgagaacacccctgatccagacaaaaaagagcacttcctccagcagcagtgagtttgaggatctgaatgcatatgcttcccaaagaaatttttacaagagaaacttaaaccgctactgccaggagcactggccattccagccatgcctcactgggaggccctgagcattctagccggcggctgcacagctgctggggcatctccatgaggaagagggcggtggacaggagtcatgaagactaattcggaaactcccctgaaggaggagaagacatctgagccatccttgtgccaccaagcaagagtcactccagctcctaaaaagccaccatgggaagagctgcctccaattaaagttcttgattgcaccaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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