2024-04-21 01:14:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001317166 591 bp mRNA linear PRI 30-DEC-2022 DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 3, mRNA. ACCESSION NM_001317166 VERSION NM_001317166.2 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 591) AUTHORS Campagne S, de Vries T, Malard F, Afanasyev P, Dorn G, Dedic E, Kohlbrecher J, Boehringer D, Clery A and Allain FH. TITLE An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands JOURNAL Nucleic Acids Res 49 (11), e63 (2021) PUBMED 33677607 REFERENCE 2 (bases 1 to 591) AUTHORS Haenig C, Atias N, Taylor AK, Mazza A, Schaefer MH, Russ J, Riechers SP, Jain S, Coughlin M, Fontaine JF, Freibaum BD, Brusendorf L, Zenkner M, Porras P, Stroedicke M, Schnoegl S, Arnsburg K, Boeddrich A, Pigazzini L, Heutink P, Taylor JP, Kirstein J, Andrade-Navarro MA, Sharan R and Wanker EE. TITLE Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains JOURNAL Cell Rep 32 (7), 108050 (2020) PUBMED 32814053 REFERENCE 3 (bases 1 to 591) AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG, Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF, Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC, Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A, Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG, Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S, Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A, Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S, Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V, Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X, Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood MA. TITLE A reference map of the human binary protein interactome JOURNAL Nature 580 (7803), 402-408 (2020) PUBMED 32296183 REFERENCE 4 (bases 1 to 591) AUTHORS Lan Y, Lou J, Hu J, Yu Z, Lyu W and Zhang B. TITLE Downregulation of SNRPG induces cell cycle arrest and sensitizes human glioblastoma cells to temozolomide by targeting Myc through a p53-dependent signaling pathway JOURNAL Cancer Biol Med 17 (1), 112-131 (2020) PUBMED 32296580 REMARK GeneRIF: Downregulation of SNRPG induces cell cycle arrest and sensitizes human glioblastoma cells to temozolomide by targeting Myc through a p53-dependent signaling pathway. REFERENCE 5 (bases 1 to 591) AUTHORS Yi H, Mu L, Shen C, Kong X, Wang Y, Hou Y and Zhang R. TITLE Negative cooperativity between Gemin2 and RNA provides insights into RNA selection and the SMN complex's release in snRNP assembly JOURNAL Nucleic Acids Res 48 (2), 895-911 (2020) PUBMED 31799625 REFERENCE 6 (bases 1 to 591) AUTHORS Fury MG, Zhang W, Christodoulopoulos I and Zieve GW. TITLE Multiple protein: protein interactions between the snRNP common core proteins JOURNAL Exp Cell Res 237 (1), 63-69 (1997) PUBMED 9417867 REFERENCE 7 (bases 1 to 591) AUTHORS Liu Q, Fischer U, Wang F and Dreyfuss G. TITLE The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins JOURNAL Cell 90 (6), 1013-1021 (1997) PUBMED 9323129 REFERENCE 8 (bases 1 to 591) AUTHORS Plessel G, Luhrmann R and Kastner B. TITLE Electron microscopy of assembly intermediates of the snRNP core: morphological similarities between the RNA-free (E.F.G) protein heteromer and the intact snRNP core JOURNAL J Mol Biol 265 (2), 87-94 (1997) PUBMED 9020971 REFERENCE 9 (bases 1 to 591) AUTHORS Hermann H, Fabrizio P, Raker VA, Foulaki K, Hornig H, Brahms H and Luhrmann R. TITLE snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions JOURNAL EMBO J 14 (9), 2076-2088 (1995) PUBMED 7744013 REFERENCE 10 (bases 1 to 591) AUTHORS Heinrichs V, Hackl W and Luhrmann R. TITLE Direct binding of small nuclear ribonucleoprotein G to the Sm site of small nuclear RNA. Ultraviolet light cross-linking of protein G to the AAU stretch within the Sm site (AAUUUGUGG) of U1 small nuclear ribonucleoprotein reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AV682126.1, BU540400.1 and AI742299.1. On Aug 14, 2020 this sequence version replaced NM_001317166.1. Summary: The protein encoded by this gene is a component of the U1, U2, U4, and U5 small nuclear ribonucleoprotein complexes, precursors of the spliceosome. The encoded protein may also be a part of the U7 small nuclear ribonucleoprotein complex, which participates in the processing of the 3' end of histone transcripts. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]. Transcript Variant: This variant (3) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is 1 aa shorter compared to isoform a. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BU540400.1, HY188847.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA1965299, SAMEA1966682 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3 AV682126.1 32-34 4-444 BU540400.1 4-444 445-591 AI742299.1 6-152 c FEATURES Location/Qualifiers source 1..591 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="2" /map="2p13.3" gene 1..591 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="small nuclear ribonucleoprotein polypeptide G" /db_xref="GeneID:6637" /db_xref="HGNC:HGNC:11163" /db_xref="MIM:603542" exon 1..123 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /inference="alignment:Splign:2.1.0" variation 2 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1697168896" variation 7 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:948243782" variation 8 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1697168765" variation 9 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:910028055" variation 13 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1225022321" variation 17 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1257672318" variation 18 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1559047817" variation 22 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:75215614" variation 23 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1199934570" variation 25 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:185436321" variation 26 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:376553694" variation 27 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:15656" variation 29 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:918260985" variation 30 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1262779235" variation 31 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:976455711" variation 32 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1574000745" variation 33 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:965064512" variation 34 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1201528067" variation 36 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:374092476" variation 38 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1574000727" variation 40 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1373048918" variation 41 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1218617499" variation 42 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1318013805" variation 44 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:763792385" variation 45 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:373447773" variation 46 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:191710102" variation 48 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:2104929555" variation 49 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:560407173" variation 50 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:370473703" variation 51 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1303219650" variation 52 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1021384283" variation 53 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1232366380" variation 54 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1697166411" variation 55 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:540402095" variation 56 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:745331803" variation 58 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:780871842" variation 59 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:973600434" variation 60 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1697166056" variation 62 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:756875894" variation 64 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1344532007" variation 65 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:377108614" variation 66 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:758112405" variation 67 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:752545398" variation 68 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1177448774" variation 71..79 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="" /replace="tgagcccgc" /db_xref="dbSNP:1462957586" misc_feature 71..73 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="upstream in-frame stop codon" variation 71 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:766441729" variation 74 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1427335462" variation 75 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:760913250" variation 76 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:750698198" variation 77 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:891674502" variation 79 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:372874888" variation 80..81 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="gg" /replace="ggg" /db_xref="dbSNP:34968038" variation 81 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:375246588" variation 82 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1559047692" variation 84 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1697164788" variation 85 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1697164710" variation 86 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1697164651" variation 88 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:769221300" variation 89 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:763161158" variation 90 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:775954821" variation 91 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:769520794" CDS 92..319 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /EC_number="1.8.1.4" /note="isoform c is encoded by transcript variant 3; small nuclear ribonucleoprotein G; snRNP-G; sm protein G" /codon_start=1 /product="small nuclear ribonucleoprotein G isoform c" /protein_id="NP_001304095.1" /db_xref="GeneID:6637" /db_xref="HGNC:HGNC:11163" /db_xref="MIM:603542" /translation="
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVIRGNSIIMLEALERV"
misc_feature 104..310 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="Sm protein G; Region: Sm_G; cd01719" /db_xref="CDD:212466" misc_feature order(113..115,125..127,149..151,164..166,203..205, 266..268,269..274,278..280,287..301,305..307) /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="heptamer interface [polypeptide binding]; other site" /db_xref="CDD:212466" misc_feature order(140..160,164..202,206..220) /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="Sm1 motif; other site" /db_xref="CDD:212466" misc_feature order(200..202,206..208,275..277,281..283) /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:212466" misc_feature order(266..268,269..298) /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="Sm2 motif; other site" /db_xref="CDD:212466" variation 101 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1410412790" variation 102 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1697164201" variation 103 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1697164139" variation 105 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1574000582" variation 109 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:745492903" variation 112 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1034712471" variation 115 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:776461879" variation 116 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:770559448" variation 118 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1406608772" exon 124..146 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /inference="alignment:Splign:2.1.0" variation 124 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:746433636" variation 126 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1160283358" variation 133 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1697022251" variation 136 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1322847916" variation 138 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1697022046" variation 142 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1001926555" variation 143 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1697021846" variation 146 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1190819017" exon 147..268 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /inference="alignment:Splign:2.1.0" variation 148 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1559044238" variation 150 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1262363713" variation 158 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:867009287" variation 160 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1307562690" variation 163 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:753249485" variation 169 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1361968074" variation 172 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1696989541" variation 175 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1484789979" variation 181 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696989329" variation 184 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:369987454" variation 185 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1205869193" variation 186..189 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="gggg" /replace="ggggg" /db_xref="dbSNP:1163935716" variation 186 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:759919034" variation 187 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:374726497" variation 190 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:765904173" variation 196 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696988612" variation 198 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696988521" variation 199 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:371683189" variation 205 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:772783462" variation 209 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696988204" variation 214 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696988108" variation 215 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1474110853" variation 219 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1382105736" variation 220 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696987762" variation 221 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:771611571" variation 225 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:111451431" variation 226 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1218804721" variation 235 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:761290389" variation 237 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:753363451" variation 238 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:537908196" variation 239 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1457955347" variation 244 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1193368584" variation 249 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1170388824" variation 256 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:768586959" variation 257 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1373114593" exon 269..591 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /inference="alignment:Splign:2.1.0" variation 273 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:779152735" variation 276 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1471721376" variation 287 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1696788334" variation 290 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:755155145" variation 292 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696788154" variation 296 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:754395961" variation 302 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696787957" variation 304 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1573987921" variation 305 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:780488133" variation 311 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:2104906258" variation 313 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1245488576" variation 314 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:756445303" variation 316 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:767160133" variation 321 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1696787418" variation 325 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696787344" variation 329 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:374618408" variation 330 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1573987881" variation 332..337 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="cag" /replace="cagcag" /db_xref="dbSNP:764219909" variation 332 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:111510626" variation 335 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:751262864" variation 339 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1696786821" variation 343..345 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="ccc" /replace="cccc" /db_xref="dbSNP:1274401864" variation 343 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1573987853" variation 344 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1366040566" variation 345 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:958021417" variation 346 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1283431167" variation 348 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696786393" variation 350 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:763564874" variation 351..357 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="ctctc" /replace="ctctctc" /db_xref="dbSNP:756127320" variation 351 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:762516246" variation 353 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:765099160" variation 354 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:759307677" variation 355 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:369021360" variation 359 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:748355544" variation 360 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:377653110" variation 360 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="t" /replace="tgttttact" /db_xref="dbSNP:752921568" variation 362 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:768846130" variation 363 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1031280041" variation 365 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:915207550" variation 366 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:989480809" variation 367 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:749396936" variation 368 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:999763437" variation 373 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696785112" variation 375 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1696785041" variation 376 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:890639099" variation 378 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="" /replace="g" /db_xref="dbSNP:534440407" variation 381 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696784743" variation 382 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1052340231" variation 386 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1408854010" variation 390 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:956811081" variation 394 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696784398" variation 395 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1227232649" variation 397 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:997947487" variation 398 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696783923" variation 399 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1696783831" variation 409 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696783757" variation 412..414 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="" /replace="aga" /db_xref="dbSNP:1696783673" variation 413..415 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="gac" /replace="gacgac" /db_xref="dbSNP:1471781109" variation 415..416 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="" /replace="a" /db_xref="dbSNP:1696783422" variation 415 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696783487" variation 421 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:924001449" variation 423..430 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="taaa" /replace="taaataaa" /db_xref="dbSNP:1411877720" variation 425..429 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="aataa" /replace="aataataa" /db_xref="dbSNP:2104905987" variation 426 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1348496503" variation 428 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1445044997" variation 431 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696783014" variation 432..435 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="tt" /replace="tttt" /db_xref="dbSNP:1696782783" variation 433 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1362502403" variation 434 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696782867" variation 435 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:982703853" variation 436 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1238739024" variation 441..445 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="agtca" /replace="agtcagtca" /db_xref="dbSNP:1573987666" variation 441 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:899546376" variation 450 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1696782341" variation 452 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1306633994" variation 456 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1050242" variation 463 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696782060" variation 466 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1039447167" variation 468 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1210047149" variation 470 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:941071006" variation 472 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1696781672" variation 477 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:771487967" variation 478 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696781457" variation 484 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696781368" variation 485 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1449621735" variation 486 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1024313239" variation 489 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1253430785" variation 495 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1233350411" variation 496..501 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="tttttt" /replace="ttttttt" /db_xref="dbSNP:1696780644" variation 496 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:14631" variation 501 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1457375452" variation 502 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1131031" variation 505 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:1387153487" variation 506 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="g" /db_xref="dbSNP:1696780244" variation 511..514 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="attt" /replace="atttattt" /db_xref="dbSNP:1445538636" variation 516 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1199592791" variation 520 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:747508089" variation 521 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696779877" variation 523 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1257339351" variation 525 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:952961415" variation 526 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:2272530" variation 527 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1445420089" variation 533 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1026642222" variation 537 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="t" /db_xref="dbSNP:1696779441" variation 540 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:929866211" variation 543 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:1573987536" variation 544 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1696779216" regulatory 549..554 /regulatory_class="polyA_signal_sequence" /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="hexamer: ATTAAA" variation 549 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:993781160" variation 550 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:1283212980" variation 552 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1230129954" variation 553..555 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="aag" /replace="aagaag" /db_xref="dbSNP:1696778825" variation 555 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696778751" variation 557..563 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="gaa" /replace="gaaagaa" /replace="gaaagaaagaa" /db_xref="dbSNP:1216042059" variation 559 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696778684" variation 562 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:896933760" variation 564..567 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="tctt" /replace="tcttctt" /replace="tctttctt" /db_xref="dbSNP:1380180316" variation 564 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:772584486" variation 566 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="g" /replace="t" /db_xref="dbSNP:927840214" variation 567 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:982316409" regulatory 568..573 /regulatory_class="polyA_signal_sequence" /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="hexamer: ATTAAA" variation 568..572 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="attaa" /replace="attaattaa" /db_xref="dbSNP:2104905731" variation 568 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1196670227" variation 569 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:778147781" variation 578 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="c" /db_xref="dbSNP:2104905727" polyA_site 580 /gene="SNRPG" /gene_synonym="Sm-G; SMG" variation 583 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="c" /replace="t" /db_xref="dbSNP:772399256" variation 585 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1456002498" polyA_site 591 /gene="SNRPG" /gene_synonym="Sm-G; SMG" /note="major polyA site" ORIGIN
gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttctaacatgaattttcctggttgacattgatttcaaagggttttatgcattaaagtgaaagaatcttattaaatgtgaaacatggcaagga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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