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Previous release (v1)
2024-05-04 03:30:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001252597 636 bp mRNA linear PRI 17-DEC-2022
DEFINITION Homo sapiens colipase (CLPS), transcript variant 2, mRNA.
ACCESSION NM_001252597
VERSION NM_001252597.2
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 636)
AUTHORS Zhang G, He P, Tan H, Budhu A, Gaedcke J, Ghadimi BM, Ried T,
Yfantis HG, Lee DH, Maitra A, Hanna N, Alexander HR and Hussain SP.
TITLE Integration of metabolomics and transcriptomics revealed a fatty
acid network exerting growth inhibitory effects in human pancreatic
cancer
JOURNAL Clin Cancer Res 19 (18), 4983-4993 (2013)
PUBMED 23918603
REMARK GeneRIF: Low CLPS expression is associated with pancreatic cancer.
REFERENCE 2 (bases 1 to 636)
AUTHORS Xiao X, Ferguson MR, Magee KE, Hale PD, Wang Y and Lowe ME.
TITLE The Arg92Cys colipase polymorphism impairs function and secretion
by increasing protein misfolding
JOURNAL J Lipid Res 54 (2), 514-521 (2013)
PUBMED 23204298
REMARK GeneRIF: humans with the Arg92Cys substitution will secrete less
functional colipase
REFERENCE 3 (bases 1 to 636)
AUTHORS Weyrich P, Albet S, Lammers R, Machicao F, Fritsche A, Stefan N and
Haring HU.
TITLE Genetic variability of procolipase associates with altered insulin
secretion in non-diabetic Caucasians
JOURNAL Exp Clin Endocrinol Diabetes 117 (2), 83-87 (2009)
PUBMED 18726866
REMARK GeneRIF: CLPS genetic variability associates with insulin secretory
function in non-diabetic humans and may represent a novel candidate
gene for development of type 2 diabetes
GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 4 (bases 1 to 636)
AUTHORS Wermter AK, Scherag A, Holter K, Reichwald K, Lichtner P, Siegfried
W, Blundell J, Lawton C, Whybrow S, Stubbs J, Arch JR, Meitinger T,
Platzer M, Hinney A and Hebebrand J.
TITLE Procolipase gene: no association with early-onset obesity or fat
intake
JOURNAL Obes Facts 2 (1), 40-44 (2009)
PUBMED 20054203
REMARK GeneRIF: found no evidence for an association of pancreatic
colipase(CLPS) single nucleotide polymorphisms rs2766597,
rs41270082, rs3748050, and rs3748051 with obesity or percentage of
dietary fat intake
GeneRIF: Observational study of gene-disease association and
gene-environment interaction. (HuGE Navigator)
REFERENCE 5 (bases 1 to 636)
AUTHORS D'Silva S, Xiao X and Lowe ME.
TITLE A polymorphism in the gene encoding procolipase produces a
colipase, Arg92Cys, with decreased function against long-chain
triglycerides
JOURNAL J Lipid Res 48 (11), 2478-2484 (2007)
PUBMED 17715423
REMARK GeneRIF: Our findings demonstrate that the Arg92Cys polymorphism
decreases the function of Cys92 colipase. This change may
contribute to the development of type 2 diabetes.
REFERENCE 6 (bases 1 to 636)
AUTHORS van Tilbeurgh H, Sarda L, Verger R and Cambillau C.
TITLE Structure of the pancreatic lipase-procolipase complex
JOURNAL Nature 359 (6391), 159-162 (1992)
PUBMED 1522902
REFERENCE 7 (bases 1 to 636)
AUTHORS Sims HF and Lowe ME.
TITLE The human colipase gene: isolation, chromosomal location, and
tissue-specific expression
JOURNAL Biochemistry 31 (31), 7120-7125 (1992)
PUBMED 1643046
REFERENCE 8 (bases 1 to 636)
AUTHORS Davis RC, Xia YR, Mohandas T, Schotz MC and Lusis AJ.
TITLE Assignment of the human pancreatic colipase gene to chromosome
6p21.1 to pter
JOURNAL Genomics 10 (1), 262-265 (1991)
PUBMED 2045105
REFERENCE 9 (bases 1 to 636)
AUTHORS Lowe ME, Rosenblum JL, McEwen P and Strauss AW.
TITLE Cloning and characterization of the human colipase cDNA
JOURNAL Biochemistry 29 (3), 823-828 (1990)
PUBMED 2337598
REFERENCE 10 (bases 1 to 636)
AUTHORS Sternby,B., Engstrom,A., Hellman,U., Vihert,A.M., Sternby,N.H. and
Borgstrom,B.
TITLE The primary sequence of human pancreatic colipase
JOURNAL Biochim Biophys Acta 784 (1), 75-80 (1984)
PUBMED 6691986
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from BQ271978.1, BP322637.1,
BI439786.1 and BP324927.1.
On May 31, 2019 this sequence version replaced NM_001252597.1.
Summary: The protein encoded by this gene is a cofactor needed by
pancreatic lipase for efficient dietary lipid hydrolysis. It binds
to the C-terminal, non-catalytic domain of lipase, thereby
stabilizing an active conformation and considerably increasing the
overall hydrophobic binding site. The gene product allows lipase to
anchor noncovalently to the surface of lipid micelles,
counteracting the destabilizing influence of intestinal bile salts.
This cofactor is only expressed in pancreatic acinar cells,
suggesting regulation of expression by tissue-specific elements.
Three transcript variants encoding different isoforms have been
found for this gene. [provided by RefSeq, Nov 2011].
Transcript Variant: This variant (2) contains an alternate exon
compared to variant 1. Translation of variant 2 begins in the
alternate exon, and the resulting isoform (2) has a shorter and
distinct N-terminus compared to isoform 1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: BI439786.1, BI324822.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2151405, SAMEA2153347
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-32 BQ271978.1 22-53
33-41 BP322637.1 33-41
42-611 BI439786.1 25-594 c
612-636 BP324927.1 514-538
FEATURES Location/Qualifiers
source 1..636
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6p21.31"
gene 1..636
/gene="CLPS"
/note="colipase"
/db_xref="GeneID:1208"
/db_xref="HGNC:HGNC:2085"
/db_xref="MIM:120105"
exon 1..119
/gene="CLPS"
/inference="alignment:Splign:2.1.0"
variation 1
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1312463071"
variation 2
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1768395111"
variation 3
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1304945494"
variation 5
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:566561357"
variation 7
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:199655623"
variation 8
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:758654606"
variation 9
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:753617155"
variation 10
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:779758516"
variation 11
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:2151066299"
variation 14
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:182775439"
variation 16
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768394527"
variation 17
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:897962921"
variation 19
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1476798164"
variation 21
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1040553250"
variation 23
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:750392162"
variation 24
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:767121014"
variation 25
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:756767591"
variation 26
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:751119258"
variation 27
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:763798105"
variation 29
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:762563597"
variation 30
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:775893258"
variation 31
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1768393849"
variation 32
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:765589133"
variation 33
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:3748050"
variation 34
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768393491"
variation 36
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:777068073"
variation 41
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1315317085"
variation 44
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:2151066273"
variation 46..59
/gene="CLPS"
/replace="tcctg"
/replace="tcctgatcctcctg"
/db_xref="dbSNP:751060585"
variation 47
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:771434902"
variation 48
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1378018837"
variation 49
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:747055917"
variation 50
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:773306828"
variation 51
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1400478202"
variation 52..58
/gene="CLPS"
/replace="tcct"
/replace="tcctcct"
/replace="tcctcctcct"
/db_xref="dbSNP:761365160"
variation 53
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:772312585"
variation 58
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:2766597"
variation 59
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1305934138"
variation 60
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1395448153"
variation 61
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:779892659"
variation 63
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1422981055"
variation 64
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1391790164"
variation 65
/gene="CLPS"
/replace=""
/replace="c"
/db_xref="dbSNP:1308613334"
variation 65
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:755917684"
variation 66
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:529464575"
variation 69..74
/gene="CLPS"
/replace="ctct"
/replace="ctctct"
/db_xref="dbSNP:1768391681"
variation 69
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:781207545"
variation 71
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768391754"
variation 77
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:200437409"
variation 78
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:200244589"
variation 79
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1768391450"
variation 81..83
/gene="CLPS"
/replace="t"
/replace="tat"
/db_xref="dbSNP:763805542"
variation 82
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768391383"
variation 83
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:560934358"
variation 86
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768391154"
variation 88
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1350639651"
variation 89
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:112222376"
variation 90
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1267702100"
variation 92
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768390851"
variation 93
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768390776"
variation 94
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:763736793"
variation 95..99
/gene="CLPS"
/replace="cccc"
/replace="ccccc"
/replace="cccccc"
/db_xref="dbSNP:762528702"
variation 95
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:145002055"
variation 96
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:867356635"
variation 98
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1054340429"
variation 99
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:372093288"
variation 100
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:140966197"
variation 101
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768390026"
variation 102
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1241944041"
variation 104
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:777015087"
variation 111
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768389754"
variation 112
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768389683"
variation 113
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1482413707"
variation 119
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1307951939"
exon 120..217
/gene="CLPS"
/inference="alignment:Splign:2.1.0"
variation 120
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:915747593"
variation 126
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:991947601"
variation 127
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768381605"
variation 128
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1302852927"
variation 129
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1343528533"
variation 131
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1347017198"
variation 134
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1768381412"
variation 135
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1768381361"
variation 136
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1299838691"
variation 143
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:2766596"
variation 144
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:533180734"
variation 150
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:569485391"
variation 151
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768381047"
variation 152
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1451889058"
variation 154
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1768380942"
variation 155
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1379504190"
variation 163
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1176853695"
variation 167
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:766766754"
variation 168
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:551010173"
variation 169
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1394007081"
variation 171
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1581962187"
variation 173
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1454349345"
CDS 176..472
/gene="CLPS"
/note="isoform 2 is encoded by transcript variant 2;
pancreatic colipase preproprotein; colipase, pancreatic"
/codon_start=1
/product="colipase isoform 2"
/protein_id="NP_001239526.1"
/db_xref="CCDS:CCDS75437.1"
/db_xref="GeneID:1208"
/db_xref="HGNC:HGNC:2085"
/db_xref="MIM:120105"
/translation="
MILLPQPPKKLGLQENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ"
misc_feature 218..469
/gene="CLPS"
/note="Colipase; Region: COLIPASE; smart00023"
/db_xref="CDD:128339"
variation 176
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1196329361"
variation 177
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768380420"
variation 180
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768380365"
variation 182
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:529477229"
variation 190
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1019591316"
variation 200
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1262029767"
variation 201
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1203082494"
variation 202
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768380005"
variation 203
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1484014158"
variation 204
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1256113796"
variation 212
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1330034127"
variation 213
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1231836206"
variation 215
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1321353969"
variation 216
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1581962147"
exon 218..340
/gene="CLPS"
/inference="alignment:Splign:2.1.0"
variation 218
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:751569641"
variation 220
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1473812421"
variation 223
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:201723286"
variation 224
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:748075746"
variation 229
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1239507675"
variation 230
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:373305697"
variation 234
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:770146707"
variation 235
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768350892"
variation 236
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:760509453"
variation 237
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1211417050"
variation 238
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1356710984"
variation 240
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:963027635"
variation 241
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1303690334"
variation 243
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1264620527"
variation 246
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:773085590"
variation 249
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768349344"
variation 250
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:771885099"
variation 252
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1014768828"
variation 257
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1311590635"
variation 259
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:2151065555"
variation 261
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1447560624"
variation 262
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:564175583"
variation 263..268
/gene="CLPS"
/replace="tgc"
/replace="tgctgc"
/db_xref="dbSNP:771284541"
variation 265
/gene="CLPS"
/replace=""
/replace="c"
/db_xref="dbSNP:1340758519"
variation 267
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:778278888"
variation 268
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:2151065542"
variation 269
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768348256"
variation 270
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1231211321"
variation 271
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1391987345"
variation 272
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:768210121"
variation 274
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:748806400"
variation 277
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151065531"
variation 280
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:983773632"
variation 282
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:114191664"
variation 283
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:113528670"
variation 284
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:746168432"
variation 287
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:781657138"
variation 294
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:757673222"
variation 295
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1452100861"
variation 296
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:752167102"
variation 297
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:142530335"
variation 300
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768346404"
variation 303
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1357600229"
variation 304
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:941766533"
variation 305
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:752858758"
variation 308
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:535823602"
variation 309
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:759890280"
variation 310
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768345650"
variation 311
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:147844591"
variation 315
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390477038"
variation 316
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:144552522"
variation 317
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1332156651"
variation 320
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1456365631"
variation 322
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:774284520"
variation 325
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:574902061"
variation 326
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:369964160"
variation 328
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1158811789"
variation 332
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1399740520"
variation 333
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:775002903"
variation 335
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1000840014"
variation 340
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:902534621"
exon 341..636
/gene="CLPS"
/inference="alignment:Splign:2.1.0"
variation 341
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1178438731"
variation 342
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:140627661"
variation 343
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:147555335"
variation 345
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1359439305"
variation 346
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:778333504"
variation 347
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:772679554"
variation 348
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1404809311"
variation 349
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:149878789"
variation 357
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151065244"
variation 358
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:779118221"
variation 360
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1400880683"
variation 365
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:2151065231"
variation 372
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768328138"
variation 375
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1581960591"
variation 376
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1169523042"
variation 377
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:755023217"
variation 378
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:114778877"
variation 380
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768327637"
variation 384
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1183874815"
variation 387
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:780280266"
variation 391
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:756310741"
variation 395
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1181803210"
variation 396
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:376103498"
variation 399
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1197437577"
variation 400
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:762873369"
variation 403
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1204289265"
variation 406
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1051934306"
variation 407
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:537217497"
variation 409..427
/gene="CLPS"
/replace="c"
/replace="cgtgggctccatcaccaac"
/db_xref="dbSNP:1768325864"
variation 409
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:765091326"
variation 410
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:150755879"
variation 411
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768326431"
variation 413
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1312307939"
variation 414
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1803299"
variation 416
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1448299126"
variation 421
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:556619142"
variation 422
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1581960492"
variation 424
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:770597798"
variation 426
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1439916319"
variation 429
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1295100322"
variation 430
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1768325709"
variation 432
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1351468584"
variation 433
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:760287553"
variation 436
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1425584596"
variation 437
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1246656395"
variation 438
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:2151065172"
variation 439
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768325313"
variation 440
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1581960449"
variation 441
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:932958368"
variation 444
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:922966521"
variation 447
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1384786432"
variation 449
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1193349641"
variation 451
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:573352598"
variation 452
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:748533143"
variation 455
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1251323028"
variation 456
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1177205190"
variation 458
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:41270082"
variation 459
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:780396671"
variation 461
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1223621708"
variation 465
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1358326942"
variation 466
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:373598060"
variation 470
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:898044867"
variation 472
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1304784652"
variation 473
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1241700686"
variation 478
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768323674"
variation 479
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1317046913"
variation 482..484
/gene="CLPS"
/replace="cc"
/replace="ccc"
/db_xref="dbSNP:1305666206"
variation 483
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1338175395"
variation 486
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:780044735"
variation 488
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1369611938"
variation 490
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1293914115"
variation 492
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1404063606"
variation 493
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1037382648"
variation 494
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:1768322507"
variation 497
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1168053257"
variation 499
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1768322283"
variation 500
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1365205137"
variation 507
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1301591156"
variation 509
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:756326802"
variation 510
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:750710592"
variation 514
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151065108"
variation 515
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1452730369"
variation 519..533
/gene="CLPS"
/replace="t"
/replace="taggcgcaggggcat"
/db_xref="dbSNP:1194570055"
variation 519
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1224205522"
variation 521
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768321663"
variation 522
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:567711356"
variation 523
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:546150357"
variation 524
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1488185028"
variation 525
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768321423"
variation 528
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1300212463"
variation 529
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:2151065094"
variation 530
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1223275548"
variation 532..533
/gene="CLPS"
/replace=""
/replace="at"
/db_xref="dbSNP:2151065086"
variation 533..538
/gene="CLPS"
/replace="tctc"
/replace="tctctc"
/db_xref="dbSNP:2151065083"
variation 535
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768321168"
variation 540
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:925088581"
variation 542
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1471843696"
variation 543
/gene="CLPS"
/replace=""
/replace="g"
/db_xref="dbSNP:1162781876"
variation 543
/gene="CLPS"
/replace="c"
/replace="g"
/db_xref="dbSNP:2151065078"
variation 550
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:528094398"
variation 551
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:552461215"
variation 555
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1165432233"
variation 556
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768320530"
variation 558
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768320431"
variation 559
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:530603346"
variation 560
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:913951003"
variation 561
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1384899474"
variation 564
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768319979"
variation 566
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1327896416"
variation 569
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1445127050"
variation 572
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768319680"
variation 574
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1283140290"
variation 576
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:563503714"
variation 577
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1287148024"
variation 578
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1248752506"
variation 579
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:542339898"
variation 582
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1353365059"
variation 584..587
/gene="CLPS"
/replace="at"
/replace="atat"
/db_xref="dbSNP:1440958723"
variation 584
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1217880651"
variation 585
/gene="CLPS"
/replace="t"
/replace="tt"
/db_xref="dbSNP:2151065049"
variation 586
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768318876"
variation 587..589
/gene="CLPS"
/replace="t"
/replace="tct"
/db_xref="dbSNP:1768318538"
variation 587
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:530258031"
variation 589
/gene="CLPS"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1467681587"
variation 591
/gene="CLPS"
/replace="a"
/replace="t"
/db_xref="dbSNP:1768318291"
variation 593
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:992255903"
variation 602
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:559893672"
variation 603
/gene="CLPS"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:541389506"
variation 604
/gene="CLPS"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768317836"
variation 605
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768317738"
variation 610
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1378471288"
variation 611
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1425414747"
variation 619
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1768317414"
variation 620
/gene="CLPS"
/replace="g"
/replace="t"
/db_xref="dbSNP:1768317330"
variation 621
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1768317236"
variation 623
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1159064272"
variation 627
/gene="CLPS"
/replace="a"
/replace="g"
/db_xref="dbSNP:1386648954"
variation 628
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1412349483"
variation 630
/gene="CLPS"
/replace="a"
/replace="c"
/db_xref="dbSNP:1033716642"
variation 633
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1340476605"
variation 634..636
/gene="CLPS"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:2151065022"
variation 634
/gene="CLPS"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:980985528"
variation 636
/gene="CLPS"
/replace="c"
/replace="t"
/db_xref="dbSNP:1194150257"
ORIGIN
gtctcccgccacccacaccagctgtcccactcaccatggagaagatcctgatcctcctgcttgtcgccctctctgtggcctatgcagctcctggcccccgggggatcattatcaacctggctggagtgtagtggcacaatctcggctcactgcaatctctgcttcccgggttcaaatgattctcctgcctcagcctcccaagaagctgggattacaggagaacggtgagctctgcatgaatagtgcccagtgtaagagcaattgctgccagcattcaagtgcgctgggcctggcccgctgcacatccatggccagcgagaacagcgagtgctctgtcaagacgctctatgggatttactacaagtgtccctgtgagcgtggcctgacctgtgagggagacaagaccatcgtgggctccatcaccaacaccaactttggcatctgccatgacgctggacgctccaagcagtgagactgcccacccactcccacacctagcccagaatgctgtaggccactaggcgcaggggcatctctcccctgctccagcgcatctcccgggctggccacctccttgaccagcatatctgttttctgattgcgctcttcacaattaaaggcctcctgcaaaccttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]