ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-05-01 16:02:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001199233 834 bp mRNA linear PRI 27-DEC-2022
DEFINITION Homo sapiens testis expressed 48 (TEX48), transcript variant 1,
mRNA.
ACCESSION NM_001199233 XM_001715082 XM_001717108 XM_001718491 XM_003118615
XM_003118616 XM_003120101 XM_003120102 XM_003120643 XM_003120644
VERSION NM_001199233.2
KEYWORDS RefSeq; MANE Select.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 834)
AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall
R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG,
Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF,
Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC,
Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A,
Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG,
Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S,
Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A,
Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van
Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S,
Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli
D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V,
Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X,
Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S,
Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood
MA.
TITLE A reference map of the human binary protein interactome
JOURNAL Nature 580 (7803), 402-408 (2020)
PUBMED 32296183
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL160275.14.
On Jul 25, 2019 this sequence version replaced NM_001199233.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: DB452574.1, SRR5189667.278227.1
[ECO:0000332]
RNAseq introns :: mixed sample support SAMEA1968540,
SAMEA1968968 [ECO:0006172]
##Evidence-Data-END##
##RefSeq-Attributes-START##
MANE Ensembl match :: ENST00000436752.3/ ENSP00000490263.1
RefSeq Select criteria :: based on longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-158 AL160275.14 156351-156508 c
159-266 AL160275.14 146036-146143 c
267-389 AL160275.14 145699-145821 c
390-521 AL160275.14 142522-142653 c
522-834 AL160275.14 140750-141062 c
FEATURES Location/Qualifiers
source 1..834
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="9"
/map="9q32"
gene 1..834
/gene="TEX48"
/note="testis expressed 48"
/db_xref="GeneID:100505478"
/db_xref="HGNC:HGNC:52393"
exon 1..158
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 1
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216950"
variation 3
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:755023784"
variation 4
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:969570404"
variation 5
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133771273"
variation 6..8
/gene="TEX48"
/replace="a"
/replace="aca"
/db_xref="dbSNP:1265652743"
variation 6
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1435964771"
variation 7..38
/gene="TEX48"
/replace="cag"
/replace="cagtctggtggccagcatggcatcgtgctcag"
/db_xref="dbSNP:1828215820"
variation 7
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:546010637"
variation 8
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1828216573"
variation 9
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828216496"
variation 13
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828216413"
variation 17
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1554765273"
variation 18
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133771255"
variation 20
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216260"
variation 22
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828216180"
variation 24
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1238147793"
variation 26
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1439776287"
variation 29
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:771344893"
variation 30
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1391799607"
variation 31
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1828215960"
variation 34
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215898"
variation 39
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:887338122"
variation 44..48
/gene="TEX48"
/replace="ct"
/replace="cttct"
/db_xref="dbSNP:1451419525"
variation 44
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1047306771"
variation 49
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1167598993"
variation 52
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215454"
variation 53
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1458694261"
variation 57
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828215315"
variation 59
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828215136"
variation 61
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1253247985"
variation 63
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:895469195"
variation 64
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214916"
variation 70
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1176288992"
variation 71
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:998726967"
variation 72
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214790"
variation 74
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1157487884"
variation 76
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828214650"
variation 77
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:901333826"
variation 81
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214491"
variation 82
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828214405"
variation 83
/gene="TEX48"
/replace=""
/replace="t"
/db_xref="dbSNP:942787047"
variation 83
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1075372"
variation 85
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828214068"
variation 88
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828214013"
variation 90
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:374680641"
variation 92
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1326822723"
variation 93
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:778260277"
variation 97
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1397031384"
variation 98
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:370976615"
variation 99
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1828213586"
variation 102
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1444628657"
variation 103
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1075371"
variation 104
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1828213292"
variation 105
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1828213214"
variation 107
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133771152"
variation 108
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1336463915"
variation 118
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:906037111"
variation 128
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1828212996"
variation 129
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1467349173"
variation 133
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1828212841"
variation 135
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1043194019"
variation 136
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:2133771134"
variation 139
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133771132"
variation 148
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1255090269"
variation 157
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133771125"
variation 158
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1214785582"
exon 159..266
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 163
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:544101322"
variation 166
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:199890976"
variation 169
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1451067377"
variation 171
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827954049"
variation 172
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827954002"
variation 176
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:181740024"
variation 177
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1248933054"
variation 180
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:938187434"
variation 181
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1400430611"
variation 182
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827953751"
variation 184
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:925436732"
variation 187
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1413092151"
variation 195
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1827953601"
variation 200
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827953546"
variation 201
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1459164098"
variation 203
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827953322"
variation 204
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827953267"
variation 205
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1386906176"
variation 215
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1289902862"
variation 216..222
/gene="TEX48"
/replace="cacccct"
/replace="cacccctcacccct"
/db_xref="dbSNP:1827952887"
variation 216
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1388164374"
variation 218..221
/gene="TEX48"
/replace="cccc"
/replace="ccccc"
/db_xref="dbSNP:1564316273"
variation 218
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1221961685"
variation 219
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:921066228"
variation 223..240
/gene="TEX48"
/replace="gcaga"
/replace="gcagacaaagctggcaga"
/db_xref="dbSNP:1339377912"
variation 224
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:564838622"
variation 225
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827952066"
variation 226
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:2133759575"
variation 228
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1323687263"
variation 233
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1275476904"
variation 235
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:980008750"
variation 236
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:545077729"
variation 237
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:751564653"
variation 240
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287664648"
misc_feature 242..244
/gene="TEX48"
/note="upstream in-frame stop codon"
variation 243
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827951724"
variation 244
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:935707973"
variation 245
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827951620"
variation 248
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827951562"
variation 249
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1406290610"
variation 261
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1343053623"
CDS 263..625
/gene="TEX48"
/note="isoform 1 is encoded by transcript variant 1;
testis-expressed protein 48"
/codon_start=1
/product="testis-expressed protein 48 isoform 1"
/protein_id="NP_001186162.1"
/db_xref="CCDS:CCDS83406.1"
/db_xref="GeneID:100505478"
/db_xref="HGNC:HGNC:52393"
/translation="
MAAHQNLILKIFCLCCRDCQEPYAINDSKVPSQTQEHKPSTQNLLLQKDELDRQNPKRINAVSHLPSRTPLIQTKKSTSSSSSEFEDLNAYASQRNFYKRNLNRYCQEHWPFQPCLTGRP"
misc_feature 347..520
/gene="TEX48"
/note="propagated from UniProtKB/Swiss-Prot
(A0A1B0GUV7.1); Region: Disordered.
/evidence=ECO:0000256|SAM:MobiDB-lite"
variation 264
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1302157994"
exon 267..389
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 268
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827945695"
variation 270
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945621"
variation 272
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945543"
variation 277
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133759285"
variation 283
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:997141336"
variation 285
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827945426"
variation 286
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1338637052"
variation 288
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:759915694"
variation 289
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1564316170"
variation 290
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1428512949"
variation 291
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:145810678"
variation 294..299
/gene="TEX48"
/replace="tct"
/replace="tcttct"
/db_xref="dbSNP:1401151518"
variation 295
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1463515775"
variation 296
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1301027842"
variation 305
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1396426038"
variation 309
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:899749982"
variation 310
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1827944805"
variation 313
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944742"
variation 314
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:933987898"
variation 316
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827944619"
variation 317
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1419726341"
variation 318
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:557924595"
variation 322
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944500"
variation 323
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827944440"
variation 324
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1054660664"
variation 325
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1227725026"
variation 326
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1175665385"
variation 329
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:757465416"
variation 330
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:113359630"
variation 331
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1205958390"
variation 335
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827943981"
variation 347
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:2133759176"
variation 348
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1460414738"
variation 351
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1231632332"
variation 352
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:754361450"
variation 353
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1255921250"
variation 354
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1464981702"
variation 359
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:565817649"
variation 363
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1377480467"
variation 364
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827943538"
variation 367
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:2296948"
variation 369
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1205991199"
variation 370
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1318155053"
variation 371
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827943192"
variation 373
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827943138"
variation 376
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:535814739"
variation 381
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:188157892"
variation 382
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:909938189"
variation 385
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:550813108"
variation 387
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1390194184"
variation 388
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:991190160"
exon 390..521
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 392
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:2133756227"
variation 396
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1359992"
variation 402
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:928225343"
variation 404..405
/gene="TEX48"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1827880703"
variation 406
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133756204"
variation 407
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827880635"
variation 408
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1359784378"
variation 412
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1452914024"
variation 413
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:981454432"
variation 416
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:969580762"
variation 420
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1017148265"
variation 426
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827880266"
variation 428
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1243553029"
variation 434
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1339613775"
variation 435
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:903423606"
variation 437
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1040422079"
variation 442
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:556323205"
variation 443
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:910651353"
variation 444
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1402082523"
variation 446
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827879873"
variation 448
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827879818"
variation 452
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:777468715"
variation 453
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287244743"
variation 454
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1392636139"
variation 455
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:998207581"
variation 458
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1159612263"
variation 459
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827879446"
variation 462
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:78332732"
variation 463
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:772022288"
variation 467
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1018863117"
variation 468
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1423150644"
variation 472
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1564315284"
variation 473..474
/gene="TEX48"
/replace=""
/replace="ct"
/db_xref="dbSNP:1827879024"
variation 474
/gene="TEX48"
/replace=""
/replace="t"
/db_xref="dbSNP:1158278021"
variation 474
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:930742031"
variation 478
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:373767666"
variation 480
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827878768"
variation 483
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:2296947"
variation 484..489
/gene="TEX48"
/replace="aaaaaa"
/replace="aaaaaaa"
/db_xref="dbSNP:1260244729"
variation 484
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1589375239"
variation 490
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827878438"
variation 491
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1192364904"
variation 495
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133756077"
variation 496
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:761273255"
variation 498
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827878250"
variation 499
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1270641485"
variation 503
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133756062"
variation 506
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1219739616"
variation 509
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:746668634"
variation 510
/gene="TEX48"
/replace=""
/replace="g"
/db_xref="dbSNP:1229317437"
variation 510
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1043545448"
variation 514
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1200052556"
variation 516
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1305741410"
variation 518
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827877741"
variation 521
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1010589138"
exon 522..834
/gene="TEX48"
/inference="alignment:Splign:2.1.0"
variation 522
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133754380"
variation 523
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1197375385"
variation 526
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1461649745"
variation 529
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:16930732"
variation 532
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1257369549"
variation 535
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1223980673"
variation 537
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754344"
variation 539
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:140513600"
variation 541
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827849125"
variation 545
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1285349144"
variation 551
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1375215354"
variation 552
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:866099220"
variation 554
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827848892"
variation 563
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:895206482"
variation 564
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1231143650"
variation 565
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1312260747"
variation 566
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827848626"
variation 567
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1335652788"
variation 570
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133754307"
variation 571..572
/gene="TEX48"
/replace="cc"
/replace="ccc"
/db_xref="dbSNP:148105030"
variation 571
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1235377735"
variation 572
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:190530784"
variation 573
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1034208598"
variation 574
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827848270"
variation 582
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:775353840"
variation 585
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1393534289"
variation 586
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1053159251"
variation 587
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827848050"
variation 588
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1055207"
variation 593
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754255"
variation 594
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:928690363"
variation 596
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827847760"
variation 604
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827847719"
variation 605
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1425586051"
variation 606
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827847614"
variation 612..613
/gene="TEX48"
/replace=""
/replace="ct"
/db_xref="dbSNP:1166667646"
variation 612
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:765863737"
variation 616..617
/gene="TEX48"
/replace=""
/replace="c"
/db_xref="dbSNP:1408902796"
variation 616
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:949335728"
variation 618
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:916395944"
variation 619
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:746084773"
variation 620
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:945697069"
variation 621
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:2133754206"
variation 623
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1301977292"
variation 624
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1432082458"
variation 627
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:2133754189"
variation 632
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827847060"
variation 634
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827847001"
variation 636
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:547207700"
variation 637
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:530170660"
variation 638
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1364046878"
variation 639
/gene="TEX48"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:760370212"
variation 640
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:185674825"
variation 644
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1237268659"
variation 648
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1486884274"
variation 649
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1204053006"
variation 652
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1462642922"
variation 653
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:972548176"
variation 655
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1198842009"
variation 656
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:2133754132"
variation 657
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1344350278"
variation 658
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1280385164"
variation 666
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1241383909"
variation 667
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1375156856"
variation 668
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:931780255"
variation 676
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:921660214"
variation 677
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:961327779"
variation 678
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1172961257"
variation 679
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1486426224"
variation 680
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:550723839"
variation 684
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827845525"
variation 687
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1008856181"
variation 688
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1360197886"
variation 693
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1431773032"
variation 694
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:114247676"
variation 699
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827845087"
variation 705
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827845020"
variation 707
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:942174904"
variation 708
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1306119963"
variation 717
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1304857134"
variation 722..729
/gene="TEX48"
/replace="aggag"
/replace="aggaggag"
/db_xref="dbSNP:1827844518"
variation 724
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844681"
variation 725
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844596"
variation 729
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1350497036"
variation 734
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1214977790"
variation 735
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:77521529"
variation 739
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827844304"
variation 742
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:983630849"
variation 752
/gene="TEX48"
/replace="g"
/replace="t"
/db_xref="dbSNP:1827844159"
variation 760
/gene="TEX48"
/replace="c"
/replace="g"
/db_xref="dbSNP:1827844092"
variation 763
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827844035"
variation 765
/gene="TEX48"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:970953021"
variation 771
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1216104414"
variation 774
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1243295579"
variation 782
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1589374349"
variation 783
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1476784707"
variation 793
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1564314688"
variation 795
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1395689667"
variation 796
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827843369"
variation 798
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:181552382"
variation 799
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1827843210"
variation 802
/gene="TEX48"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:761616377"
variation 807
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1156554199"
variation 810
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:1053127192"
regulatory 811..816
/regulatory_class="polyA_signal_sequence"
/gene="TEX48"
/note="hexamer: ATTAAA"
variation 811
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:998981472"
variation 812
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1320586086"
variation 818
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1827842772"
variation 824
/gene="TEX48"
/replace="a"
/replace="t"
/db_xref="dbSNP:1827842705"
variation 825
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:532261876"
variation 826
/gene="TEX48"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:774228975"
variation 828
/gene="TEX48"
/replace="a"
/replace="c"
/db_xref="dbSNP:1307644725"
variation 831
/gene="TEX48"
/replace="c"
/replace="t"
/db_xref="dbSNP:1327146507"
polyA_site 834
/gene="TEX48"
/note="major polyA site"
variation 834
/gene="TEX48"
/replace="a"
/replace="g"
/db_xref="dbSNP:959500785"
ORIGIN
agtatacagtctggtggccagcatggcatcgtgctcagcagaacttctccctcctcctcgctgttgtggtccagtccaaacatcccagccccaacattccctggttccccagctctgtgacatcacagacagccttctgtctactctgccagctgcaggaaacagcccagcccagtgaactgggctcaaactcaagactggctgattcaacaaggcacccctgcagacaaagctggcagagtagaagtttcaactcctttccatggcagcccaccaaaacctgatcttgaagatcttctgtttatgctgcagggactgtcaggagccctatgccatcaatgactccaaggttcccagtcaaacccaggagcacaagccatcgacccaaaatttgctgcttcagaaggatgagcttgacagacaaaatcccaagcgcattaacgcagtctcccatttgccttcgagaacacccctgatccagacaaaaaagagcacttcctccagcagcagtgagtttgaggatctgaatgcatatgcttcccaaagaaatttttacaagagaaacttaaaccgctactgccaggagcactggccattccagccatgcctcactgggaggccctgagcattctagccggcggctgcacagctgctggggcatctccatgaggaagagggcggtggacaggagtcatgaagactaattcggaaactcccctgaaggaggagaagacatctgagccatccttgtgccaccaagcaagagtcactccagctcctaaaaagccaccatgggaagagctgcctccaattaaagttcttgattgcaccaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]