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Previous release (v1)
2024-04-29 05:01:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001160302 7037 bp mRNA linear PRI 08-NOV-2023
DEFINITION Homo sapiens synaptojanin 1 (SYNJ1), transcript variant 3, mRNA.
ACCESSION NM_001160302
VERSION NM_001160302.2
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 7037)
AUTHORS Song DY, Yuan L, Cui N, Feng C, Meng L, Wang XH, Xiang M, Liu D,
Wang C, Zhang Z, Li JY and Li W.
TITLE alpha-Synuclein induces deficiency in clathrin-mediated endocytosis
through inhibiting synaptojanin1 expression
JOURNAL J Neurochem 167 (3), 461-484 (2023)
PUBMED 37788328
REMARK GeneRIF: alpha-Synuclein induces deficiency in clathrin-mediated
endocytosis through inhibiting synaptojanin1 expression.
REFERENCE 2 (bases 1 to 7037)
AUTHORS Viard J, Loe-Mie Y, Daudin R, Khelfaoui M, Plancon C, Boland A,
Tejedor F, Huganir RL, Kim E, Kinoshita M, Liu G, Haucke V, Moncion
T, Yu E, Hindie V, Blehaut H, Mircher C, Herault Y, Deleuze JF,
Rain JC, Simonneau M and Lepagnol-Bestel AM.
TITLE Chr21 protein-protein interactions: enrichment in proteins involved
in intellectual disability, autism, and late-onset Alzheimer's
disease
JOURNAL Life Sci Alliance 5 (12), e202101205 (2022)
PUBMED 35914814
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 7037)
AUTHORS Zou L, Zhang X, Xiong M, Meng L, Tian Y, Pan L, Yuan X, Chen G,
Wang Z, Bu L, Yao Z, Zhang Z, Ye K and Zhang Z.
TITLE Asparagine endopeptidase cleaves synaptojanin 1 and triggers
synaptic dysfunction in Parkinson's disease
JOURNAL Neurobiol Dis 154, 105326 (2021)
PUBMED 33677035
REMARK GeneRIF: Asparagine endopeptidase cleaves synaptojanin 1 and
triggers synaptic dysfunction in Parkinson's disease.
REFERENCE 4 (bases 1 to 7037)
AUTHORS Paesmans J, Martin E, Deckers B, Berghmans M, Sethi R, Loeys Y,
Pardon E, Steyaert J, Verstreken P, Galicia C and Versees W.
TITLE A structure of substrate-bound Synaptojanin1 provides new insights
in its mechanism and the effect of disease mutations
JOURNAL Elife 9, e64922 (2020)
PUBMED 33349335
REMARK GeneRIF: A structure of substrate-bound Synaptojanin1 provides new
insights in its mechanism and the effect of disease mutations.
Publication Status: Online-Only
REFERENCE 5 (bases 1 to 7037)
AUTHORS Ando K, Ndjim M, Turbant S, Fontaine G, Pregoni G, Dauphinot L,
Yilmaz Z, Suain V, Mansour S, Authelet M, De Dekker R, Leroy K,
Delatour B, Duyckaerts C, Potier MC and Brion JP.
CONSRTM Brain Bank NeuroCEB Neuropathology Network
TITLE The lipid phosphatase Synaptojanin 1 undergoes a significant
alteration in expression and solubility and is associated with
brain lesions in Alzheimer's disease
JOURNAL Acta Neuropathol Commun 8 (1), 79 (2020)
PUBMED 32493451
REMARK GeneRIF: The lipid phosphatase Synaptojanin 1 undergoes a
significant alteration in expression and solubility and is
associated with brain lesions in Alzheimer's disease.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 7037)
AUTHORS Haffner C, Takei K, Chen H, Ringstad N, Hudson A, Butler MH,
Salcini AE, Di Fiore PP and De Camilli P.
TITLE Synaptojanin 1: localization on coated endocytic intermediates in
nerve terminals and interaction of its 170 kDa isoform with Eps15
JOURNAL FEBS Lett 419 (2-3), 175-180 (1997)
PUBMED 9428629
REFERENCE 7 (bases 1 to 7037)
AUTHORS Nemoto Y, Arribas M, Haffner C and DeCamilli P.
TITLE Synaptojanin 2, a novel synaptojanin isoform with a distinct
targeting domain and expression pattern
JOURNAL J Biol Chem 272 (49), 30817-30821 (1997)
PUBMED 9388224
REFERENCE 8 (bases 1 to 7037)
AUTHORS Micheva KD, Kay BK and McPherson PS.
TITLE Synaptojanin forms two separate complexes in the nerve terminal.
Interactions with endophilin and amphiphysin
JOURNAL J Biol Chem 272 (43), 27239-27245 (1997)
PUBMED 9341169
REFERENCE 9 (bases 1 to 7037)
AUTHORS Ringstad N, Nemoto Y and De Camilli P.
TITLE The SH3p4/Sh3p8/SH3p13 protein family: binding partners for
synaptojanin and dynamin via a Grb2-like Src homology 3 domain
JOURNAL Proc Natl Acad Sci U S A 94 (16), 8569-8574 (1997)
PUBMED 9238017
REFERENCE 10 (bases 1 to 7037)
AUTHORS Cook Shukla,L., Schulze,J., Farlow,J., Pankratz,N.D., Wojcieszek,J.
and Foroud,T.
TITLE Parkinson Disease Overview
JOURNAL (in) Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH,
Gripp KW and Amemiya A (Eds.);
GENEREVIEWS(R);
(1993)
PUBMED 20301402
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AP000279.2, AP000278.2,
AP000277.3, AP000276.3 and AP000275.1.
On Dec 20, 2022 this sequence version replaced NM_001160302.1.
Summary: This gene encodes a phosphoinositide phosphatase that
regulates levels of membrane phosphatidylinositol-4,5-bisphosphate.
As such, expression of this enzyme may affect synaptic transmission
and membrane trafficking. Multiple transcript variants encoding
different isoforms have been found for this gene. [provided by
RefSeq, Sep 2011].
Transcript Variant: This variant (3) differs in its 5' UTR, 5'
coding region and 3' coding region, and uses a downstream
translational start codon, compared to variant 1. The encoded
isoform (c) has a shorter N-terminus, a distinct C-terminus, and is
shorter than isoform a.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14372080.1687319.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMEA1965299,
SAMEA1966682 [ECO:0006172]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-85 AP000279.2 21901-21985 c
86-231 AP000279.2 20836-20981 c
232-318 AP000278.2 21752-21838 c
319-586 AP000278.2 19629-19896 c
587-812 AP000278.2 14848-15073 c
813-896 AP000278.2 14019-14102 c
897-958 AP000278.2 8097-8158 c
959-1055 AP000278.2 6769-6865 c
1056-1225 AP000278.2 5539-5708 c
1226-1307 AP000278.2 3829-3910 c
1308-1460 AP000278.2 1287-1439 c
1461-1617 AP000277.3 24527-24683 c
1618-1641 AP000277.3 22214-22237 c
1642-1833 AP000277.3 19222-19413 c
1834-1918 AP000277.3 16170-16254 c
1919-2059 AP000277.3 12315-12455 c
2060-2252 AP000277.3 11825-12017 c
2253-2411 AP000277.3 10795-10953 c
2412-2568 AP000277.3 3598-3754 c
2569-2686 AP000277.3 2885-3002 c
2687-2902 AP000277.3 2569-2784 c
2903-2981 AP000276.3 4727-4805 c
2982-3144 AP000276.3 1623-1785 c
3145-3354 AP000275.1 68200-68409 c
3355-3498 AP000275.1 67453-67596 c
3499-3537 AP000275.1 66775-66813 c
3538-3576 AP000275.1 63902-63940 c
3577-3647 AP000275.1 63703-63773 c
3648-3756 AP000275.1 61478-61586 c
3757-3974 AP000275.1 60715-60932 c
3975-3998 AP000275.1 56668-56691 c
3999-7037 AP000275.1 50570-53608 c
FEATURES Location/Qualifiers
source 1..7037
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="21"
/map="21q22.11"
gene 1..7037
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="synaptojanin 1"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
exon 1..85
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 86..231
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
CDS 108..3995
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/EC_number="3.1.3.36"
/note="isoform c is encoded by transcript variant 3;
inositol 5'-phosphatase (synaptojanin 1); synaptojanin-1,
polyphosphoinositide phosphatase; synaptic inositol
1,4,5-trisphosphate 5-phosphatase 1; phosphoinositide
5-phosphatase; inositol polyphosphate-5-phosphatase G"
/codon_start=1
/product="synaptojanin-1 isoform c"
/protein_id="NP_001153774.1"
/db_xref="CCDS:CCDS54483.1"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
/translation="
MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYSKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRIDSSDEDRISEVRKVLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVVYLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKNLYGKQIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFDYHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRVSEQTLQSASSKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFIEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQNIYKEVIAVQGPPDGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQPSG"
misc_feature 207..1547
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoinositide polyphosphatase (Sac family)
[Signal transduction mechanisms]; Region: COG5329"
/db_xref="CDD:227637"
misc_feature 1605..2804
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="propagated from UniProtKB/Swiss-Prot (O43426.2);
Region: Catalytic. /evidence=ECO:0000255"
misc_feature 1704..2711
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Catalytic inositol polyphosphate 5-phosphatase
(INPP5c) domain of synaptojanin 1; Region: INPP5c_Synj1;
cd09098"
/db_xref="CDD:197332"
misc_feature order(1728..1730,1734..1736,1878..1880,2109..2114,
2172..2174,2181..2186,2295..2297,2301..2303,2307..2309,
2457..2462,2505..2507,2523..2525,2679..2684)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative active site [active]"
/db_xref="CDD:197332"
misc_feature order(1728..1730,1878..1880,2172..2174,2295..2297,
2301..2303,2523..2525,2679..2684)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative catalytic site [active]"
/db_xref="CDD:197332"
misc_feature order(1734..1736,1878..1880,2679..2681)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:197332"
misc_feature order(1878..1880,2109..2114,2172..2174,2181..2186,
2307..2309,2457..2462,2505..2507,2679..2681)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative PI/IP binding site [chemical binding];
other site"
/db_xref="CDD:197332"
misc_feature order(2172..2174,2301..2303,2682..2684)
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197332"
misc_feature 2565..2567
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8CHC4; propagated from
UniProtKB/Swiss-Prot (O43426.2); phosphorylation site"
misc_feature 2595..2597
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163;
propagated from UniProtKB/Swiss-Prot (O43426.2);
phosphorylation site"
misc_feature 2706..3131
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Domain of unknown function (DUF1866); Region:
DUF1866; pfam08952"
/db_xref="CDD:286093"
misc_feature 3264..3266
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q62910; propagated from
UniProtKB/Swiss-Prot (O43426.2); phosphorylation site"
misc_feature <3267..3893
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
misc_feature 3591..3593
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q62910; propagated from
UniProtKB/Swiss-Prot (O43426.2); phosphorylation site"
misc_feature 3660..3662
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Omega-N-methylarginine.
/evidence=ECO:0000250|UniProtKB:Q8CHC4; propagated from
UniProtKB/Swiss-Prot (O43426.2); methylation site"
misc_feature 3717..3719
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:18669648,
ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569;
propagated from UniProtKB/Swiss-Prot (O43426.2);
phosphorylation site"
misc_feature 3933..3935
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:23186163; propagated from
UniProtKB/Swiss-Prot (O43426.2); phosphorylation site"
exon 232..318
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 319..586
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 587..812
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 813..896
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 897..958
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 959..1055
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1056..1225
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1226..1307
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1308..1460
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1461..1617
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1618..1641
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1642..1833
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1834..1918
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 1919..2059
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2060..2252
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2253..2411
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2412..2568
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2569..2686
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2687..2902
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2903..2981
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 2982..3144
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3145..3354
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3355..3498
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3499..3537
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3538..3576
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3577..3647
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3648..3756
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3757..3974
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3975..3998
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
exon 3999..7037
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/inference="alignment:Splign:2.1.0"
regulatory 7017..7022
/regulatory_class="polyA_signal_sequence"
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="hexamer: AATAAA"
polyA_site 7037
/gene="SYNJ1"
/gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
/note="major polyA site"
ORIGIN
gagctgctgcggccagacccacgggcagccgggcgggcggacgcctccaagaccagtctctgcctccgcagcgtcagcgggagcgggctgcctccgaagaaaggagaatggcgttcagtaaaggattccggatctatcacaaattggatcccccacctttcagcctcatagtggaaactaggcataaggaagaatgtctcatgttcgagtctggggctgtcgctgtgctctcatctgcagaaaaagaggcaatcaagggtacatactccaaagtactggatgcatatggactcttaggtgttctgcggttaaatcttggtgatactatgttacattatctggtcctagtcactggatgtatgtctgttggaaaaattcaagaatctgaagttttccgagttacttccactgagtttatatcactgcgaatcgattcttcagatgaggatcgcatttcagaagtgcggaaagttttgaattcaggaaacttttattttgcatggtctgcatctggcatcagtttagatttgagtcttaatgcgcatcgtagcatgcaagaacagacaactgataatagatttttctggaatcagtctttgcatttgcatctcaaacactatggcgtgaattgtgatgactggttattacgtcttatgtgtggaggagtagaaatcagaacaatttatgctgctcataaacaggcgaaggcttgcctcatttcaagattaagctgtgaacgagctgggaccaggtttaatgtccggggaacaaatgatgatggtcatgttgccaattttgtagaaacagaacaggttgtgtacttagatgactcagtttcttccttcatacaaatccgaggatctgttccattgttctgggagcaaccagggttgcaagtgggatctcatcgtgtccgtatgtcaaggggatttgaagccaatgcacctgcttttgacaggcattttagaacacttaagaacttatatggtaaacaaataatagtaaatttgcttggatctaaggaaggtgaacatatgctaagtaaagctttccagagtcatttgaaagcttctgaacatgctgctgatatccagatggtgaattttgactatcatcaaatggttaagggaggaaaggcagaaaaattacatagtgttcttaaacctcaagtccagaagtttctagattatggatttttttatttcaatggaagtgaagttcaaagatgccagagtggtacagttcgaacaaactgcttggattgtcttgatagaacaaatagtgtgcaggcatttcttggcttagagatgctagctaaacagttggaagctcttggtttagctgaaaagcctcagttggtgactcgctttcaagaagtttttcggtcaatgtggtccgtgaatggtgattcaatcagtaagatatatgcaggaactggagctcttgaagggaaagcgaagttaaaagatggtgctcgctctgttacccgaacaattcagaataacttctttgacagctccaagcaagaggccattgatgttttgctactgggaaatactctgaatagtgatttagctgacaaagctcgagcacttttaactactggaagtttgcgtgtttctgagcagacattacagtcagcatcttctaaagtactaaagagcatgtgtgagaatttctacaaatattcaaagcctaagaaaattcgagtatgtgtcggaacctggaatgtgaatggtgggaagcaatttcgcagcatagcttttaagaatcagacactcactgactggcttcttgatgcacccaagttagctggcatccaggagtttcaagataaaagaagtaagccaactgatatatttgcaattggttttgaagaaatggtagaattgaatgctggaaacattgtgagtgcaagcacaacaaatcagaagctctgggctgtagaacttcagaagacaatctccagagacaacaagtatgtgctgctggcttctgaacagttggtgggcgtctgtttgtttgtttttatcagaccacagcatgctccttttatcagggatgttgcagttgatactgtgaagactggaatgggaggtgcaactggaaataagggagcagttgcaatccgaatgctcttccatacaaccagcctttgcttcgtctgtagccactttgctgcagggcagtcacaagtcaaagaaagaaatgaagattttatagaaatagcacgaaaattgagttttcctatgggaaggatgctattttcccatgactatgtattttggtgtggtgatttcaactatcgaatcgatctccctaacgaagaagttaaagagctcataagacagcaaaattgggattctcttatagcaggagatcaacttatcaatcagaaaaatgctggacaggtttttagaggatttttagaaggaaaggtaacctttgctccgacatataagtatgacttgttttctgacgactatgacaccagtgaaaagtgccgcacccctgcctggacagaccgtgtcctttggagaaggaggaaatggccttttgatagatcagctgaagatctagatcttctaaatgctagttttcaagatgaaagcaaaattctgtacacgtggactccaggcactttgctgcactatggaagagctgagctgaagacttctgaccacaggcctgtcgttgccctgattgatatagatatatttgaagttgaagctgaagagaggcaaaacatttataaagaagtaattgcagttcagggtccaccagatggtacagtattggtctcaatcaaaagttctttaccagaaaataatttttttgatgatgccttgattgatgagcttctgcagcagtttgcaagttttggtgaagttatacttataagatttgtagaagataaaatgtgggttacatttttggagggaagctctgccttgaatgttctgagcctaaatggtaaagagttattgaatcggactataactattgctttaaaaagtccagactggatcaaaaatttggaagaagaaatgagtttagagaaaattagcattgcattgccatcatcaacaagctctaccctgcttggtgaagatgcagaggttgcagcagattttgatatggaaggtgatgttgatgactatagtgctgaagtggaggaacttcttcctcagcatctccagccatcttcaagttccggccttggtacttcccccagctcttcaccccgaactagtccctgccagtcacctacaatatcagagggtcctgtaccttcccttcccatcagaccaagccgagcaccgtcaagaactcctgggcctcccagtgcacagagttctcctattgacgcgcagccagcaacgccgctgccgcagaaagaccccgcccagcccttggagcccaagcggccgccgccgccccgcccggtcgcccctcccacacgcccggctcccccacagagacctcctccgccttcaggggctaggagtcctgcacccactagaaaggaatttggagcacccaaaagccctggaacaacaaggaaagataatataggacgcagtcagccttcacctcaagcaggacttgcaggcccaggacctgctggatacagtacagccagaccgacgattcctcctcgtgctggagttatcagtgccccacagagccacgcgcgggcatctgctggaagactgactcctgaaagccaaagcaaaacatcagaaacgtcgaaaggttcaactttccttcctgaaccactgaagcctcaggctgcttttcctccgcagtcttctttgcccccgcctgctcaaaggttgcaagagcctcttgtccctgtggcagcacctatgcctcagtctggcccccagccaaatttggaaaccccaccacaaccaccacctcgaagcaggtcatcccatagcttgccttcagaagcttcctcacaaccgcaacaggagcaaccatcagggtaacaggtaaaaacaaatggaatctctgatggcaaaagagaatcaccattaaagattgacccatttgaagatctgtcatttaatctgcttgctgtatcaaaggctcagctatctgttcaaacgtcacctgttcccaccccagacccaaagaggttgattcagttgccttctgcaacgcaaagtaatgttttgagttctgtaagttgcatgccaacaatgcctccaattccagctcggagtcaatcccaggaaaatatgcgaagttctccaaacccatttattactggcttgaccaggacaaatcctttcagtgacaggactgctgctcctggaaacccatttagagccaagtctgaagaatcagaggcaacttcatggttctccaaagaagagcccgttactatcagtcctttcccttctctgcagcctcttggtcataacaaaagcagggcttcatcttcacttgatggctttaaggacagttttgatctacagggccagtctacattaaaaattagcaacccgaaaggatgggtaaccttcgaggaagaagaggattttggtgtgaaagggaagtcaaagtcagcttgttcagacttactgggtaatcagccaagttcattttctggctccaacctgacattgaatgatgactggaataaaggtacaaatgtctccttctgtgtgttgccgtcaagaagacctcctccacctcctgtccctctgctcccgcccggcaccagccctccagtagatcctttcacgaccttggcctctaaggcttcacccacactggactttacagaaagataacgccatgcaatagaaaacagtgggtacttgcttttggcaggatagagctaagagaattgggcattagtatttcattatgtgcaataagtcattgtaagtgcactgatatcttcacaaaacaccactatttgatgtgtacagagttggactatgtgtatattggaaataaggaaaaacccttctcattgttaactggagttttgatgtatttctctttggatgaataggagacagtagtagccataaaaagtacttatactttagaaaacagtccttattcagaaacttttcggtcagtcttctgaagaatctcaaaaagcccacccaactttcagctgacatttccaccagccctctcatacttgttaacaattggtatctttgagtatttaccaaagagctgccaaggttacagtgaacagagttttgaaaggcattgctttaaaggaaaaaagtataggtatgtgtacatatataatacatacaaacacatgtacttctgtatacatttacatatttttacaattcatactttaatttctaggctataactcagaccaaattatacctaaaagttccaacaaagtccctttttcaatatcacattaccaaaaagatggctgcaaatgtaatttggacctttcattaattttgttttcaaaactagaataatctcaccacagaatcagaattttctaccgttccacacccaaccccttcaaatacacacaaccttgttacttttcactccagcaccttcatacgcttttctccaggaggaggttcttgcagctggaaacagcctattttgtggtcactgtcaagtggatggatattctagcgctcccaaaaaagcactatggccttatatgcagggaaggcacataccaccaagttcaatgagaaatattagagctaaccgtactctcttctctgcgtacgttcgagtatacgttgcccatatccctcccatattttctttttgctgcttttgctctggaactttgcttttagcagggaaagcagctgtcccctgagtgctttgaattgggaatatacccagtgtgtgttctcccccctcttacgaggctacataacacatctatgatgctgctttaagtttttagaggctatacctcaaagtagctgcggattttgtctcctgcactgccaatatgcaactgatcccgcttttattaattttttgaagaagtacacagaatttttacagaatgtagtattttgatatcattaagtaaaccaatcagaaaactccttgagcaatagttgtttctttgtcagtttcagttacaatcatctttacccattaagacttacattaacattccttttatataaagagttgtatatgtccacctaaattcctatgtccacacttaacctttaaagatgtacattgagggaatatcaaaaaatagcgttcatggctacgaatatgtagaatgttaaaagcacagcaaactgcactgcacttataaagcaaatctattagaaaaaaagcatttttctaaatgctcaaatgttatcaaaatactatatttatagaagtaatcttctctgttaacagccaagatttgctgttagaaataactcttgtgagttttatattgtgctttttggaggttctaatcatttcagcagtagcgtcttaaacagcagtattactataagcagttgcttcaaaatgtgaattaacttgttgaaactgtggctttaacatccatgtgactagtgtatatggtatttgctctccattagcaaaataattcattgttaggtaaacttcactagtgcaaattgcagatctgtgagcaatgtttcctattgaatataaactactgtctaaaatatacatatcagcagcccagcctttatcaggaaaattatacttggcaagttgctgaaaatgcacaaagttatgaaagttaaaggtatgctgcaaataactagccattattctatgtattattaaatatttactagttctgttaaaagcagagcagaagttagacactaaggatctctttgtgaactctgtgttctctatattagattgctgtttatatgtaagaattttattgcttatgtggcatacaatatttataactataaactttatagaagtacagtattaaagtcagtggtacacagacattctgtacatatcctgtgaaacgtgctgtcatatgaaataaatatatctgtctttac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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