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Previous release (v1)
2024-04-19 06:05:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001077697 1161 bp mRNA linear PRI 31-MAY-2023
DEFINITION Homo sapiens testis specific protein Y-linked 3 (TSPY3), mRNA.
ACCESSION NM_001077697 XM_001126486
VERSION NM_001077697.2
KEYWORDS RefSeq; MANE Select.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1161)
AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD.
TITLE Phylogenetic-based propagation of functional annotations within the
Gene Ontology consortium
JOURNAL Brief Bioinform 12 (5), 449-462 (2011)
PUBMED 21873635
REFERENCE 2 (bases 1 to 1161)
AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC006158.6.
On Aug 16, 2010 this sequence version replaced NM_001077697.1.
##Evidence-Data-START##
Transcript exon combination :: ERR279874.771.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968968, SAMEA2148093
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
MANE Ensembl match :: ENST00000457222.6/ ENSP00000398163.2
RefSeq Select criteria :: based on expression, longest protein
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-532 AC006158.6 105067-105598
533-610 AC006158.6 106206-106283
611-722 AC006158.6 106412-106523
723-868 AC006158.6 106625-106770
869-950 AC006158.6 106877-106958
951-1161 AC006158.6 107653-107863
FEATURES Location/Qualifiers
source 1..1161
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="Y"
/map="Yp11.2"
gene 1..1161
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/note="testis specific protein Y-linked 3"
/db_xref="GeneID:728137"
/db_xref="HGNC:HGNC:33876"
exon 1..532
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 38
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:1556181250"
CDS 47..973
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/note="Testis-specific Y-encoded protein 10; Cancer/testis
antigen 78"
/codon_start=1
/product="testis-specific Y-encoded protein 3"
/protein_id="NP_001071165.2"
/db_xref="CCDS:CCDS48204.1"
/db_xref="GeneID:728137"
/db_xref="HGNC:HGNC:33876"
/translation="
MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS"
misc_feature 422..910
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/note="Nucleosome assembly protein (NAP); Region: NAP;
cl08298"
/db_xref="CDD:447601"
variation 73
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1556181259"
variation 110
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:1603141598"
variation 201
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="g"
/replace="t"
/db_xref="dbSNP:1603141603"
variation 208
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="g"
/replace="t"
/db_xref="dbSNP:1603141608"
variation 437
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="t"
/db_xref="dbSNP:1556181266"
variation 460
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1556181269"
variation 485
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1556181276"
exon 533..610
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 556
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="t"
/db_xref="dbSNP:1603141653"
variation 596
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1603141654"
exon 611..722
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 662
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1219141147"
exon 723..868
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 727
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:754154065"
variation 730
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:1379353911"
variation 749
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:755328003"
variation 762
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="c"
/db_xref="dbSNP:1603141715"
variation 763
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1241359213"
variation 767
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:778589299"
variation 769
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="t"
/db_xref="dbSNP:747771474"
variation 775
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="g"
/replace="t"
/db_xref="dbSNP:1308939808"
variation 777
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="c"
/db_xref="dbSNP:1352162650"
variation 779
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1224356028"
variation 780
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:771675793"
variation 781
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:304805"
variation 782
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace=""
/replace="t"
/db_xref="dbSNP:747930864"
variation 785
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:746471360"
variation 786
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:770780960"
variation 788
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:776627032"
variation 789
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:759462673"
variation 797
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1179056320"
variation 798
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:774753415"
variation 822
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:762155735"
variation 825
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1166895573"
variation 826
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:767726541"
variation 831
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:1368977900"
variation 835
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="g"
/db_xref="dbSNP:773175478"
variation 842
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="t"
/db_xref="dbSNP:2016028853"
variation 844
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016028926"
variation 845
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1457502683"
variation 852
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1556181519"
exon 869..950
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 946
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1291834713"
exon 951..1161
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/inference="alignment:Splign:2.1.0"
variation 957
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="c"
/replace="t"
/db_xref="dbSNP:1556181563"
variation 1019
/gene="TSPY3"
/gene_synonym="CT78; TSPY; TSPY1; TSPY10"
/replace="a"
/replace="g"
/db_xref="dbSNP:1556181574"
ORIGIN
ggcccttcgcgcgcagtcccttagggggcgcctggaagcccggcgcatgcgccctgagggctcgctgacctaccgggtgccagagaggctgcggcagggtttctgtggcgtgggtcgggcagcacaggccttggtgtgtgcgagtgccaaggagggcaccgccttcaggatggaggctgtacaggagggggcggccggggtggagagtgagcaggcggctttgggggaggaggcggtgctgctgttggatgacataatggcggaggtggaggtggtggcggaggaggagggcctcgtggagcggcgggaggaggcccagcgggcacagcaggctgtgcctggccctgggcccatgaccccagagtctgcactggaggagctgctggccgttcaggtggagctggagccggttaatgcccaagccaggaaggccttttctcggcagcgggaaaagatggagcggaggcgcaagccccacctagaccgcagaggcgccgtcatccagagcgtccctggcttctgggccaatgttattgcaaaccacccccagatgtcagccctgatcactgacgaagatgaagacatgctgagctacatggtcagcctggaggtggaagaagagaagcatcctgttcatctctgcaagatcatgttgttctttcggagtaacccctacttccagaataaagtgattaccaaggaatatctggtgaacatcacagaatacagggcttctcattccactccaattgagtggtatccggattatgaagtggaggcgtatcgccgcagacaccacaacagcagccttaacttcttcaactggttctctgaccacaacttcgcaggatctaacaagattgctgagatcctatgtaaggacctgtggcgcaatcccctgcaatactacaagaggatgaagccacctgaagagggaacagagacgtcaggggactcccagttgttgagttgaatatgatggagcatcagattttacctaatacagcagaactcctaaaaagttacagccatatgcaggacggcagtactcagcatggtcttatgcacaggaactaaaggaaaaagagatcgagtcacaaaaattcaggaagagggggtaaatgtggattgtatggaatgaaaaataaacattctcaagga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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