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Previous release (v1)
2024-04-19 07:01:48, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
misc_feature 97..351 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 382..534 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 535..897 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 280..534 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 565..717 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 718..1080 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 1444..1728 /gene="AGO3" /gene_synonym="EIF2C3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1756..1908 /gene="AGO3" /gene_synonym="EIF2C3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1909..2271 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut,...
misc_feature 509..793 /gene="AGO3" /gene_synonym="EIF2C3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 821..973 /gene="AGO3" /gene_synonym="EIF2C3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 974..1336 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 675..959 /gene="AGO3" /gene_synonym="EIF2C3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 987..1139 /gene="AGO3" /gene_synonym="EIF2C3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1140..1502 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 175..327 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 328..690 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 373..597 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 625..777 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 778..1140 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a...
misc_feature 5833..6057 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 6085..6237 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 6238..6600 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that...
misc_feature <1410..1628 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1422..1424,1467..1469,1509..1511,1521..1523, 1575..1577,1596..1598,1602..1604) /gene="AGO3" /gene_synonym="EIF2C3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="...
misc_feature 191..553 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(347..349,392..394,434..436,446..448,500..502, 521..523,527..529) /gene="AGO4" /gene_synonym="EIF2C4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...
misc_feature 100..441 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(235..237,280..282,322..324,334..336,388..390, 409..411,415..417) /gene="AGO3" /gene_synonym="EIF2C3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...
misc_feature 1055..1396 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1190..1192,1235..1237,1277..1279,1289..1291, 1343..1345,1364..1366,1370..1372) /gene="AGO3" /gene_synonym="EIF2C3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 1050..1391 /gene="AGO3" /gene_synonym="EIF2C3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1185..1187,1230..1232,1272..1274,1284..1286, 1338..1340,1359..1361,1365..1367) /gene="AGO3" /gene_synonym="EIF2C3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 8028..8252 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 8280..8432 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 8433..8795 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that...
misc_feature 519..743 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 771..923 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 924..1286 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a...
misc_feature 313..705 /gene="AGO1" /gene_synonym="EIF2C; EIF2C1; GERP95; hAgo1; NEDLBAS; Q99" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 733..885 /gene="AGO1" /gene_synonym="EIF2C; EIF2C1; GERP95; hAgo1; NEDLBAS; Q99" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 886..1248 /gene="AGO1" /gene_synonym="EIF2C; EIF2C1; GERP95; hAgo1; NEDLBAS; Q99" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key...
misc_feature 7830..10229 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 8931..10106 /gene="AGO2" /gene_synonym="CASC7; EIF2C2; LESKRES; LINC00980; PPD; Q10" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_...
LOCUS XR_008485950 2303 bp RNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X8, misc_RNA. ACCESSION XR_008485950 VERSION XR_008485950.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XR_008485947 5417 bp RNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X1, misc_RNA. ACCESSION XR_008485947 VERSION XR_008485947.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XR_008485948 6391 bp RNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X2, misc_RNA. ACCESSION XR_008485948 VERSION XR_008485948.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XR_008485949 6076 bp RNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X3, misc_RNA. ACCESSION XR_008485949 VERSION XR_008485949.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_054334830 1767 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X9, mRNA. ACCESSION XM_054334830 VERSION XM_054334830.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
LOCUS XM_054334831 1663 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens argonaute RISC component 4 (AGO4), transcript variant X10, mRNA. ACCESSION XM_054334831 VERSION XM_054334831.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic...
GeneRIF: PIR gene expression is highly dependent on the expression of HR-HPV E6 and E7 oncoproteins HPV-positive cell lines. REFERENCE 5 (bases 1 to 1616) AUTHORS Burke JM, Kincaid RP, Nottingham RM, Lambowitz AM and Sullivan CS. TITLE DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs JOURNAL Genes Dev 30 (18), 2076-2092 (2016) PUBMED 27798849 REMARK GeneRIF: DUSP11 converts the 5' triphosphate of miRNA precursors to a 5' monophosphate, promoting loading of derivative 5p...
misc_feature 1524..1667 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1668..2021 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order...
misc_feature 1142..1285 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1286..1639 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order...
misc_feature 1524..1667 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1668..2021 /gene="PIWIL2" /gene_synonym="CT80; HILI; mili; PIWIL1L" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3716..4108 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4133..4897 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4883..5146 /gene="TNRC6C" /note...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3725..4117 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4142..4906 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4892..5155 /gene="TNRC6C" /note...
misc_feature 3207..3539 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3546..3659 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3783..4472 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4497..5438 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5424..5687 /gene="TNRC6C" /note="...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3728..4255 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4280..5044 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5030..5293 /gene="TNRC6C" /note...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3737..4264 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4289..5053 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5039..5302 /gene="TNRC6C" /note...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3716..4108 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4133..5014 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5000..5263 /gene="TNRC6C" /note...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3725..4117 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4142..5023 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5009..5272 /gene="TNRC6C" /note...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3728..4255 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4280..5161 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5147..5410 /gene="TNRC6C" /note...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3737..4264 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4289..5170 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5156..5419 /gene="TNRC6C" /note...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3728..4255 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4280..5221 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5207..5470 /gene="TNRC6C" /note...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <3737..4264 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4289..5230 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5216..5479 /gene="TNRC6C" /note...
misc_feature 3271..3654 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3931..>4287 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4564..5349 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5371..5646 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note...
misc_feature 3341..3724 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4001..>4357 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4634..5419 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5441..5716 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note...
misc_feature 2752..3135 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3412..>3768 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4045..4830 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4852..5127 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note...
misc_feature 3319..3702 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3979..>4335 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4612..5397 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5419..5694 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note...
misc_feature 3264..3647 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3924..>4280 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4557..5342 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5364..5639 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note...
misc_feature 3429..3779 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4473..5258 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5280..5555 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" polyA_site 8259 /gene="TNRC6A" /gene_synonym="...
misc_feature 3576..3926 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4620..5405 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5427..5702 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" polyA_site 8406 /gene="TNRC6A" /gene_synonym="...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3725..4414 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4439..5320 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5306..5569 /gene="TNRC6C" /note="...
misc_feature 3149..3481 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3488..3601 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3725..4414 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4439..5380 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5366..5629 /gene="TNRC6C" /note="...
misc_feature 3429..3812 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4506..5291 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5313..5588 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" polyA_site 8292 /gene="TNRC6A" /gene_synonym="...
misc_feature 3140..3472 /gene="TNRC6C" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3479..3592 /gene="TNRC6C" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3716..4405 /gene="TNRC6C" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4430..5371 /gene="TNRC6C" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5357..5620 /gene="TNRC6C" /note="...
misc_feature 3576..3959 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4653..5438 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5460..5735 /gene="TNRC6A" /gene_synonym="CAGH26; FAME6; GW1; GW182; TNRC6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" polyA_site 8439 /gene="TNRC6A" /gene_synonym="...
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
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Redirect URI : http://ggrna.dbcls.jp/hs/Argonaute
lang : en |
div : |
spe : hs |
query_string : Argonaute |
format : html |
download :
0.000 | 0.000 | search_start;
0.083 | 0.083 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Homo sapiens (human)?to=0&format=json
0.202 | 0.119 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.207 | 0.005 | cgi_end;
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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