GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2021-01-16 23:54:00, GGRNA : RefSeq release 203 (Nov, 2020)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens retinol dehydrogenase 11 (RDH11), transcript variant 2, mRNA. (2329 bp)
agcacccaggactgatgaggtcttaacaaaaaccagtgtggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctaaaaacaaacaaacaaaaaaaacaattcttcattcagaaaaattatcttagggactgatattggtaattatggtcaatttaataatattttggggcatttccttacattgtcttgacaagattaaaatgtctgtgccaaaattttgtattttatttggagacttcttatcaaaagtaatgctgccaaaggaagtctaaggaattagtagtgttcccatcacttgtttggagtgtgctattctaaaagattttgatttcctggaatgacaattatattttaactttggtgggggaaagagttataggaccacagtcttcacttctgatacttgtaaattaatcttttattgcacttgttttgaccattaagctatatgtttagaaatggtcattttacggaaaaattagaaaaattctgataatagtgcagaataaatgaattaatgttttacttaatttatattgaactgtcaatgacaaataaaaattctttttgattattttttgttttcatttaccagaata...
position 1857 1887 1931 1968 1978 1996 2022 2070 2079 2109 2119
Synonym: ARSDR1; CGI82; HCBP12; MDT1; PSDR1; RALR1; RDJCSS; SCALD; SDR7C1
NM_001252650.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens retinol dehydrogenase 11 (RDH11), transcript variant 1, mRNA. (2539 bp)
agcacccaggactgatgaggtcttaacaaaaaccagtgtggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctaaaaacaaacaaacaaaaaaaacaattcttcattcagaaaaattatcttagggactgatattggtaattatggtcaatttaataatattttggggcatttccttacattgtcttgacaagattaaaatgtctgtgccaaaattttgtattttatttggagacttcttatcaaaagtaatgctgccaaaggaagtctaaggaattagtagtgttcccatcacttgtttggagtgtgctattctaaaagattttgatttcctggaatgacaattatattttaactttggtgggggaaagagttataggaccacagtcttcacttctgatacttgtaaattaatcttttattgcacttgttttgaccattaagctatatgtttagaaatggtcattttacggaaaaattagaaaaattctgataatagtgcagaataaatgaattaatgttttacttaatttatattgaactgtcaatgacaaataaaaattctttttgattattttttgttttcatttaccagaata...
position 2067 2097 2141 2178 2188 2206 2232 2280 2289 2319 2329
Synonym: ARSDR1; CGI82; HCBP12; MDT1; PSDR1; RALR1; RDJCSS; SCALD; SDR7C1
NM_016026.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/217776_at
lang : en | div : | spe : hs | query_string : 217776_at | format : html | download :

0.000 | 0.000 | search_start;
0.090 | 0.090 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTTGGGGCATTTCCTTACATTGTC)?source=Homo sapiens (human)?to=0&format=json
0.100 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TGGAGTGTGCTATTCTAAAAGATTT)?source=Homo sapiens (human)?to=0&format=json
0.111 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TATAGGACCACAGTCTTCACTTCTG)?source=Homo sapiens (human)?to=0&format=json
0.121 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTGTTCCCATCACTTGTTTGGAGTG)?source=Homo sapiens (human)?to=0&format=json
0.133 | 0.012 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GGAATTAGTAGTGTTCCCATCACTT)?source=Homo sapiens (human)?to=0&format=json
0.143 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GCACTTGTTTTGACCATTAAGCTAT)?source=Homo sapiens (human)?to=0&format=json
0.153 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GATTTCCTGGAATGACAATTATATT)?source=Homo sapiens (human)?to=0&format=json
0.163 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CTTCTTATCAAAAGTAATGCTGCCA)?source=Homo sapiens (human)?to=0&format=json
0.173 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:ATCTTTTATTGCACTTGTTTTGACC)?source=Homo sapiens (human)?to=0&format=json
0.191 | 0.018 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:ACAGTCTTCACTTCTGATACTTGTA)?source=Homo sapiens (human)?to=0&format=json
0.201 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AAGATTAAAATGTCTGTGCCAAAAT)?source=Homo sapiens (human)?to=0&format=json
0.253 | 0.052 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTTGGGGCATTTCCTTACATTGTC)%26(nt:TGGAGTGTGCTATTCTAAAAGATTT)%26(nt:TATAGGACCACAGTCTTCACTTCTG)%26(nt:GTGTTCCCATCACTTGTTTGGAGTG)%26(nt:GGAATTAGTAGTGTTCCCATCACTT)%26(nt:GCACTTGTTTTGACCATTAAGCTAT)%26(nt:GATTTCCTGGAATGACAATTATATT)%26(nt:CTTCTTATCAAAAGTAATGCTGCCA)%26(nt:ATCTTTTATTGCACTTGTTTTGACC)%26(nt:ACAGTCTTCACTTCTGATACTTGTA)%26(nt:AAGATTAAAATGTCTGTGCCAAAAT)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.255 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]